Non-Coding RNA Search

Ss1.1-Pig4-TMW8021L13.3.5

Sequence:


               
               GGAACATTTGGTGTTACAGCAGTCTCTGGACATATCTAAAATTAATCGAACTTTTCATAC
TGGAGACTTTGTTGTTGTTGTTGTTCTTTGAAGAACAGTCTCTGTGGTATTTGAAGGGTT
TGGGGGAGGGAGAAAATATTAATGGGAAAAGTATTCAGAAATTACGGCTTTTGCCTTTTT
AAAAAGTAGGTGGGATTGTGTCAATCTTGGTTGATGAGCTGCAGTTTTACAAGGCTGATC
ACTTCCTACAAGGACAATGGTAAACATTTTATAAAGATGTTTTTTCAGATTAATTACTGG
GACAGAAGTAATTTGGAAGCCCAGTTCCTTGGGTGGGATAGGAATGAAAGCCTAAACCTC
TTCCTTTAGCTTTGTTCCTATTTCTTGCACCTTCCCATATTTATGTGCCTTTTGTCTATT
TATAATGCCACTGGAAGAGGAGAGAGGACTTTTTCTGTCATTTGATTTCTTTTATAACTT
CGTTAGTTTTTTGAAGCTGCAAACACTACAAGGCTTTGAGGTGATCTATGCCTGGAGTTC
AGTAAAGACAATGCAAAAATCCTAAAGACTTGGCCAACTAGACCTCTGTTTAGCAAACTC
ACTTAAACACCTCCTGGAACTCTTAGGTCTGTTCTTTTTAGGTAAATGGTGATACTGTTA
ATGTTATTTTCATTTGACTTATTCACACTAATTTTCTTTAGCTACTAACCCAGTGAGAGA
AAAATACATGATTTTTTTCTTGTAGCTACTAATCCAATATGAGAAAAATACATGATCTTT
TCTTGTAAAAGACTGATGTTAGCAAATAATTTTTTAAATTCACCTTTTAAACACATTTAG
CCATTTGTAAGGATTTTATTGAGCTACGTTACATTTTAAACGTTCACAAGCACTAATCCT
CCCAACTTTCCCATCATTGTTTTCACTTCCTACAAATGGAAAGTTTGAATGTTTGTCAAA
TGAGTCCAGGTCTCCTATGATGTAATCACTGCCTATGTATGTATGCACAGAACCAGCTAG
TGAGTTTGTCAAGCCTTGTCTATCTAATTGGTCAAGTCCAAAGGGATTATTATTCCTTGA
TGTTTGCTTTGTCTTGGCTACAAATGTGCAGAGGTATACATGTGCGATGTCAATGTGTGT
GTCTTCATTTTGTTATTCTTTAAAAATAATTGGCAGCAACTGTGTTTGTACCAAATGATT
TCTAAGTATGTGTTTTTACAGTAATGAGTGAAAGTGGAAAGTTTCTTTCTGAAAGGGAGT
GAATTGACCGTTTTGTGTTGTAAGATTTAAGTTATAACTTATTGAGCACTTTTAGTAATA
ACTGTTTTTAAACTTGTCTAATACCTTTCTAGGGGTATTGTTTGTTAATGTGACTTATTT
AAAGCCTTTTTTGTTTAAGTTGCTGCTTTAGGTCGATAGTATGTTTTAGATGATTTAAAT
TTTTTCCAGTCTGTACAATTAGCCAGTCAAAGCAGAAAGGCCTGATTGTATAGAAACCCA
CTGAAAAGAGGTCCAGAAGAGAGAGCAGAGGTAGTGTGGGAAGTTATACCACCTATGTGC
AGCATCCAGCATTGTGGAAAGATGACTTTCAATATGTAACTACGGAGCTGTAGTGCCATT
AGAAACTGTGAATTTCCAAATAAATCTGAACACTTGTCTTTATTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACATTTGGTGTTACAGCAGTCTCTGGACATATCTAAAATTAATCGAACTTTTCATAC
TGGAGACTTTGTTGTTGTTGTTGTTCTTTGAAGAACAGTCTCTGTGGTATTTGAAGGGTT
TGGGGGAGGGAGAAAATATTAATGGGAAAAGTATTCAGAAATTACGGCTTTTGCCTTTTT
AAAAAGTAGGTGGGATTGTGTCAATCTTGGTTGATGAGCTGCAGTTTTACAAGGCTGATC
ACTTCCTACAAGGACAATGGTAAACATTTTATAAAGATGTTTTTTCAGATTAATTACTGG
GACAGAAGTAATTTGGAAGCCCAGTTCCTTGGGTGGGATAGGAATGAAAGCCTAAACCTC
TTCCTTTAGCTTTGTTCCTATTTCTTGCACCTTCCCATATTTATGTGCCTTTTGTCTATT
TATAATGCCACTGGAAGAGGAGAGAGGACTTTTTCTGTCATTTGATTTCTTTTATAACTT
CGTTAGTTTTTTGAAGCTGCAAACACTACAAGGCTTTGAGGTGATCTATGCCTGGAGTTC
AGTAAAGACAATGCAAAAATCCTAAAGACTTGGCCAACTAGACCTCTGTTTAGCAAACTC
ACTTAAACACCTCCTGGAACTCTTAGGTCTGTTCTTTTTAGGTAAATGGTGATACTGTTA
ATGTTATTTTCATTTGACTTATTCACACTAATTTTCTTTAGCTACTAACCCAGTGAGAGA
AAAATACATGATTTTTTTCTTGTAGCTACTAATCCAATATGAGAAAAATACATGATCTTT
TCTTGTAAAAGACTGATGTTAGCAAATAATTTTTTAAATTCACCTTTTAAACACATTTAG
CCATTTGTAAGGATTTTATTGAGCTACGTTACATTTTAAACGTTCACAAGCACTAATCCT
CCCAACTTTCCCATCATTGTTTTCACTTCCTACAAATGGAAAGTTTGAATGTTTGTCAAA
TGAGTCCAGGTCTCCTATGATGTAATCACTGCCTATGTATGTATGCACAGAACCAGCTAG
TGAGTTTGTCAAGCCTTGTCTATCTAATTGGTCAAGTCCAAAGGGATTATTATTCCTTGA
TGTTTGCTTTGTCTTGGCTACAAATGTGCAGAGGTATACATGTGCGATGTCAATGTGTGT
GTCTTCATTTTGTTATTCTTTAAAAATAATTGGCAGCAACTGTGTTTGTACCAAATGATT
TCTAAGTATGTGTTTTTACAGTAATGAGTGAAAGTGGAAAGTTTCTTTCTGAAAGGGAGT
GAATTGACCGTTTTGTGTTGTAAGATTTAAGTTATAACTTATTGAGCACTTTTAGTAATA
ACTGTTTTTAAACTTGTCTAATACCTTTCTAGGGGTATTGTTTGTTAATGTGACTTATTT
AAAGCCTTTTTTGTTTAAGTTGCTGCTTTAGGTCGATAGTATGTTTTAGATGATTTAAAT
TTTTTCCAGTCTGTACAATTAGCCAGTCAAAGCAGAAAGGCCTGATTGTATAGAAACCCA
CTGAAAAGAGGTCCAGAAGAGAGAGCAGAGGTAGTGTGGGAAGTTATACCACCTATGTGC
AGCATCCAGCATTGTGGAAAGATGACTTTCAATATGTAACTACGGAGCTGTAGTGCCATT
AGAAACTGTGAATTTCCAAATAAATCTGAACACTTGTCTTTATTAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               231-424, - strand, RNAz p=0.774336

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-424, - strand, RNAz p=0.774336

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-728, gnl|bosTau2|chr16 (28872090-28872818)
               

               
               1-728, gnl|Hg17|chr1 (169311018-169311749)
               

               
               1-728, gnl|Mm7|chr1 (161780908-161780171)
               


               
               736-1666, gnl|bosTau2|chr16 (28872782-28873714)
               

               
               736-1666, gnl|Hg17|chr1 (169311710-169312630)
               

               
               736-1666, gnl|Mm7|chr1 (161780218-161779347)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-728, gnl|bosTau2|chr16 (28872090-28872818)
               

               
               1-728, gnl|Hg17|chr1 (169311018-169311749)
               

               
               1-728, gnl|Mm7|chr1 (161780908-161780171)
               


               
               736-1666, gnl|bosTau2|chr16 (28872782-28873714)
               

               
               736-1666, gnl|Hg17|chr1 (169311710-169312630)
               

               
               736-1666, gnl|Mm7|chr1 (161780218-161779347)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               kid (0.389206)
               

               
               eye (0.341006)
               

               
               ski (0.29347)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               kid (0.389206)
               

               
               eye (0.341006)
               

               
               ski (0.29347)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	1-728, gnl\|bosTau2\|chr16 (28872090-28872818)
	1-728, gnl\|Hg17\|chr1 (169311018-169311749)
	1-728, gnl\|Mm7\|chr1 (161780908-161780171)

	736-1666, gnl\|bosTau2\|chr16 (28872782-28873714)
	736-1666, gnl\|Hg17\|chr1 (169311710-169312630)
	736-1666, gnl\|Mm7\|chr1 (161780218-161779347)

	amn (0.417711)
	kid (0.389206)
	eye (0.341006)
	ski (0.29347)
	nms (0.213858)
	tes (0.207814)
	nep (0.183925)
	sag (0.182715)
	gul (0.177588)
	fco (0.157208)
	eli (0.151814)
	lin (0.145603)
	lnt (0.142308)
	nca (0.136874)
	pla (0.133672)
	lyg (0.133103)
	sug (0.127291)
	ese (0.126502)
	tra (0.123092)
	clu (0.119646)
	spc (0.113366)
	jej (0.0989218)