Ss1.1-Pig4-TMW8021L15.3
|
TACTAGTTCTGTTACCTAATTAAGCGTCCTTGTTTAAGGTCTGCCGTCCATCCACCTTAT
TCCAAATGGCATTCAACAGACAACAGTGTTAGACACAGTTTCCGTGTGAACAAACTAATG
CAATTCAGAGAAGCATAATCTAATCCATGAATTGTTTCCCCCTGCCTTTCCTATATTTAA
ACTTGCTGTTACCTAAATTATGATTTTTTTTTTTTATGTCTTTGGTGAGCTTGTTAATCT
CCATGACTTGAGCTTATAGCTATGTCTATTGCACAGATTGGGTAATGGAACACTAAACTT
TTATACTTGAAAATGATAGCCTTAAATGCTCATATCAGTCACAAATCTAGGATGTACTGT
CTTGTATGTGAGCTTTGTAGAGATTTTTTTAAATATAAGCATCATCCTCCCCATTGAAGA
GTGAAGAGTCTACTGGATAACTGGTCAGGATCTTTCTCCCTGAACTGGACAGTGGATGTC
TTCTTTCTCCCAAGAAGTGGCGGTTCGTGTTAAGTCCCATGCCCTTATGTATGCGCAGAT
GGAATCTGATGTTAACTTTCTCATTTCATTTTGGTCTGCTGTTTTTAGAGAGAATTGAAA
GAACTGTATAAAACTCACTTAGTATATTAGCAAAGTTGTCCAACACATAGAATTAAGACA
GTAAAGTATTATACATTTATTTCCAACTTGCCTTTGGGGATTTGATGGGAATTTTCGTTT
TTCTTCCTTAAATTCACATCTCCGAAGCTCTTTACACTTGGCTTTCTAGCCAGTAAGGTT
TAAAATCTAGAAATTTGTCCTGCCCTAAGAGAAACAGACTAGGAATCTAGAAACCCACAC
TCTGGCGTCACCTCTGTTTCTTGATTGGGCCTCAGTTTCCTCATCTTTTAAATAGCAGCG
GTAGAGGAGATGATCTCTGATATCTTCCCCTTTATCAACTCTTATGATTTTCTTCTTTCC
TACTCACAATGATCGTTGTTGGACATTACCTTTTCGGCTTCATATTCTTAAGATGGTAAA
AATCCTGTATATAGATTATTAGAACTCTAAGCAAAGATGATTATATCATCTGAACCTGAG
GTGCCTTAGGTACTCTATTGACCTTGATGGGATTTGGAGTTTCCCATTGCTTATTAAGAG
CCTTTTCGTTGCTTTGGTTCTTGAGTATTTCCTTTTTGCAAAATCCTCCCTGCCACTTTA
AAACCAAAGATTTGTTTTGTGTTCATAAACAGATTGTAGAAAAGCTGCCTTATTTTCAGA
AGCATGTCTTCATTTAAGACTTAGGTTTCCATAGAAATTCAGGCTAATCGCTGGAACAGC
TAGTTCCAAGTAGTGAAATGTCTGGAAAAATAAAATACTTCAAAAATATCTTACTGACAT
GAATTTTGCTAGTGAATGAAAATACACTGCTTCAAATAAGGTCATGTATGAATGAACTTA
AAGTTATAGTTTTGTTTTGGGTTTTTTTTGCATATAGATAATCAGTTCTGAAGTTCTTAA
AAAATAATTTTAGGGGCTTCCTGAAATCTTAATATTTTGCTTATATCCTTATCTATCTCT
AAAGGTACATTTTAAGTTAGCCTATGTTGAATTAATCATATTTCCAATAAGTAGAGCCTG
AACTAATTAATGGTTTTTATTGTGAATTATCTTAGTTATTTTAGGCATTGCTTCCATTGA
TTTTTAATTATTAATTTTAAGTACCAAATTAAATACTGGTTTGTTGGTTGTTGCTTTTTA
AGTGATTGTTACTTTAATAGTGTCCCATCTTAACACATGGGGTTACAAATAAAATAATAT
GCATAGTTTACTAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TACTAGTTCTGTTACCTAATTAAGCGTCCTTGTTTAAGGTCTGCCGTCCATCCACCTTAT
TCCAAATGGCATTCAACAGACAACAGTGTTAGACACAGTTTCCGTGTGAACAAACTAATG
CAATTCAGAGAAGCATAATCTAATCCATGAATTGTTTCCCCCTGCCTTTCCTATATTTAA
ACTTGCTGTTACCTAAATTATGATTTTTTTTTTTTATGTCTTTGGTGAGCTTGTTAATCT
CCATGACTTGAGCTTATAGCTATGTCTATTGCACAGATTGGGTAATGGAACACTAAACTT
TTATACTTGAAAATGATAGCCTTAAATGCTCATATCAGTCACAAATCTAGGATGTACTGT
CTTGTATGTGAGCTTTGTAGAGATTTTTTTAAATATAAGCATCATCCTCCCCATTGAAGA
GTGAAGAGTCTACTGGATAACTGGTCAGGATCTTTCTCCCTGAACTGGACAGTGGATGTC
TTCTTTCTCCCAAGAAGTGGCGGTTCGTGTTAAGTCCCATGCCCTTATGTATGCGCAGAT
GGAATCTGATGTTAACTTTCTCATTTCATTTTGGTCTGCTGTTTTTAGAGAGAATTGAAA
GAACTGTATAAAACTCACTTAGTATATTAGCAAAGTTGTCCAACACATAGAATTAAGACA
GTAAAGTATTATACATTTATTTCCAACTTGCCTTTGGGGATTTGATGGGAATTTTCGTTT
TTCTTCCTTAAATTCACATCTCCGAAGCTCTTTACACTTGGCTTTCTAGCCAGTAAGGTT
TAAAATCTAGAAATTTGTCCTGCCCTAAGAGAAACAGACTAGGAATCTAGAAACCCACAC
TCTGGCGTCACCTCTGTTTCTTGATTGGGCCTCAGTTTCCTCATCTTTTAAATAGCAGCG
GTAGAGGAGATGATCTCTGATATCTTCCCCTTTATCAACTCTTATGATTTTCTTCTTTCC
TACTCACAATGATCGTTGTTGGACATTACCTTTTCGGCTTCATATTCTTAAGATGGTAAA
AATCCTGTATATAGATTATTAGAACTCTAAGCAAAGATGATTATATCATCTGAACCTGAG
GTGCCTTAGGTACTCTATTGACCTTGATGGGATTTGGAGTTTCCCATTGCTTATTAAGAG
CCTTTTCGTTGCTTTGGTTCTTGAGTATTTCCTTTTTGCAAAATCCTCCCTGCCACTTTA
AAACCAAAGATTTGTTTTGTGTTCATAAACAGATTGTAGAAAAGCTGCCTTATTTTCAGA
AGCATGTCTTCATTTAAGACTTAGGTTTCCATAGAAATTCAGGCTAATCGCTGGAACAGC
TAGTTCCAAGTAGTGAAATGTCTGGAAAAATAAAATACTTCAAAAATATCTTACTGACAT
GAATTTTGCTAGTGAATGAAAATACACTGCTTCAAATAAGGTCATGTATGAATGAACTTA
AAGTTATAGTTTTGTTTTGGGTTTTTTTTGCATATAGATAATCAGTTCTGAAGTTCTTAA
AAAATAATTTTAGGGGCTTCCTGAAATCTTAATATTTTGCTTATATCCTTATCTATCTCT
AAAGGTACATTTTAAGTTAGCCTATGTTGAATTAATCATATTTCCAATAAGTAGAGCCTG
AACTAATTAATGGTTTTTATTGTGAATTATCTTAGTTATTTTAGGCATTGCTTCCATTGA
TTTTTAATTATTAATTTTAAGTACCAAATTAAATACTGGTTTGTTGGTTGTTGCTTTTTA
AGTGATTGTTACTTTAATAGTGTCCCATCTTAACACATGGGGTTACAAATAAAATAATAT
GCATAGTTTACTAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
4-1418, gnl|bosTau2|chr11 (23067147-23065753) |
|
4-1418, gnl|Hg17|chr2 (46721211-46722628) |
|
4-1418, gnl|Mm7|chr17 (85300805-85302104) |
| |
|
1712-1813, gnl|bosTau2|chr11 (23065701-23065600) |
|
1712-1813, gnl|canFam2|chr10 (51932443-51932996) |
|
1712-1813, gnl|dasNov1|scaffold_76516 (7679-7117) |
|
1712-1813, gnl|echTel1|scaffold_320111 (42844-42378) |
|
1712-1813, gnl|hg17|chr2 (46722917-46723467) |
|
1712-1813, gnl|Hg17|chr2 (46722916-46723016) |
|
1712-1813, gnl|loxAfr1|scaffold_21887 (16124-16666) |
|
1712-1813, gnl|mm7|chr17 (85302394-85302922) |
|
1712-1813, gnl|monDom2|scaffold_1 (6286528-6287154) |
|
1712-1813, gnl|oryCun1|scaffold_206187 (123204-123720) |
|
1712-1813, gnl|panTro1|chr12 (48721362-48721913) |
|
1712-1813, gnl|rheMac2|chr13 (46709330-46709878) |
|
1712-1813, gnl|rn3|chr6 (10449377-10449923) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
4-1418, gnl|bosTau2|chr11 (23067147-23065753) |
|
4-1418, gnl|Hg17|chr2 (46721211-46722628) |
|
4-1418, gnl|Mm7|chr17 (85300805-85302104) |
| |
|
1712-1813, gnl|bosTau2|chr11 (23065701-23065600) |
|
1712-1813, gnl|canFam2|chr10 (51932443-51932996) |
|
1712-1813, gnl|dasNov1|scaffold_76516 (7679-7117) |
|
1712-1813, gnl|echTel1|scaffold_320111 (42844-42378) |
|
1712-1813, gnl|hg17|chr2 (46722917-46723467) |
|
1712-1813, gnl|Hg17|chr2 (46722916-46723016) |
|
1712-1813, gnl|loxAfr1|scaffold_21887 (16124-16666) |
|
1712-1813, gnl|mm7|chr17 (85302394-85302922) |
|
1712-1813, gnl|monDom2|scaffold_1 (6286528-6287154) |
|
1712-1813, gnl|oryCun1|scaffold_206187 (123204-123720) |
|
1712-1813, gnl|panTro1|chr12 (48721362-48721913) |
|
1712-1813, gnl|rheMac2|chr13 (46709330-46709878) |
|
1712-1813, gnl|rn3|chr6 (10449377-10449923) |
|
bfe (1.94815) |
|
isp (1.05263) |
|
vin (0.997672) |
|
tbr (0.925069) |
|
sme (0.91631) |
|
fat (0.58971) |
|
ldo (0.485013) |
|
nms (0.427716) |
|
amn (0.417711) |
|
ste (0.405625) |
|
spl (0.286369) |
|
kid (0.259471) |
|
ret (0.257467) |
|
cbl (0.229595) |
|
aor (0.195274) |
|
col (0.195008) |
|
gul (0.177588) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
cki (0.165235) |
|
mga (0.160205) |
|
fco (0.157208) |
|
liv (0.146284) |
|
bla (0.124347) |
|
tra (0.123092) |
|
bfe (1.94815) |
|
isp (1.05263) |
|
vin (0.997672) |
|
tbr (0.925069) |
|
sme (0.91631) |
|
fat (0.58971) |
|
ldo (0.485013) |
|
nms (0.427716) |
|
amn (0.417711) |
|
ste (0.405625) |
|
spl (0.286369) |
|
kid (0.259471) |
|
ret (0.257467) |
|
cbl (0.229595) |
|
aor (0.195274) |
|
col (0.195008) |
|
gul (0.177588) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
cki (0.165235) |
|
mga (0.160205) |
|
fco (0.157208) |
|
liv (0.146284) |
|
bla (0.124347) |
|
tra (0.123092) |
