Non-Coding RNA Search

Ss1.1-Pig4-TMW8021M17.3

Sequence:


               
               GCCGCGACGGCGCCCACGACAAGGGGGCGGGACGCGCCGCCGTCTCGGACGAGCTGCGCC
AGTGGTACCAGCGCTCGAGCGCCTCGCACAGGGAGCACAGCCGCCTGTCGCACACCAGCT
CCACCTCCTCTGACAGCGGCTCCCAGTACAGCACCTCCTCCCAGAGCACCTTCGTGGCGC
ACAGCAGGGTCACCAGGATGCCCCAGATGTGCAAGGCCACGTCAGCTGCCTTACCTCAAA
GCCAGAGAAGCTCAACACCATCGAGTGAGATTGGAGCGACCCCCCCCAGCAGTCCCCACC
ACATCCTAACCTGGCAGACTGGGAGCTACGGTGACAGCTGCTTCCTGGACTCCGCCCTCT
ATCCAGAACTAGCTGATGTCCAGTGGTACGGGCAGGAGAAAGCCAAGCCCGGAACCCTCG
TGTGAGCCAGCCGGCCTCCATCTGACCACCTCGACGCCATTCTGAGATCACCTCACTGCC
TCTCATTTGCCTTACCCAGACGCACTGTCACCCTGCACCAGCTTCGGCCCCCAGCACTTT
CGCTCTCCCGTCTCCGCATCCCCTCACCCTCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCGACGGCGCCCACGACAAGGGGGCGGGACGCGCCGCCGTCTCGGACGAGCTGCGCC
AGTGGTACCAGCGCTCGAGCGCCTCGCACAGGGAGCACAGCCGCCTGTCGCACACCAGCT
CCACCTCCTCTGACAGCGGCTCCCAGTACAGCACCTCCTCCCAGAGCACCTTCGTGGCGC
ACAGCAGGGTCACCAGGATGCCCCAGATGTGCAAGGCCACGTCAGCTGCCTTACCTCAAA
GCCAGAGAAGCTCAACACCATCGAGTGAGATTGGAGCGACCCCCCCCAGCAGTCCCCACC
ACATCCTAACCTGGCAGACTGGGAGCTACGGTGACAGCTGCTTCCTGGACTCCGCCCTCT
ATCCAGAACTAGCTGATGTCCAGTGGTACGGGCAGGAGAAAGCCAAGCCCGGAACCCTCG
TGTGAGCCAGCCGGCCTCCATCTGACCACCTCGACGCCATTCTGAGATCACCTCACTGCC
TCTCATTTGCCTTACCCAGACGCACTGTCACCCTGCACCAGCTTCGGCCCCCAGCACTTT
CGCTCTCCCGTCTCCGCATCCCCTCACCCTCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               441-560, - strand, RNAz p=0.815366

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               441-560, - strand, RNAz p=0.815366

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-228, gnl|bosTau2|chr13 (16284961-16285188)
               

               
               1-228, gnl|Hg17|chr10 (13738866-13738639)
               

               
               1-228, gnl|Mm7|chr2 (4521299-4521526)
               


               
               322-576, gnl|bosTau2|chr13 (16300954-16301208)
               

               
               322-576, gnl|Hg17|chr10 (13729042-13728789)
               

               
               322-576, gnl|Mm7|chr2 (4528238-4528491)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-228, gnl|bosTau2|chr13 (16284961-16285188)
               

               
               1-228, gnl|Hg17|chr10 (13738866-13738639)
               

               
               1-228, gnl|Mm7|chr2 (4521299-4521526)
               


               
               322-576, gnl|bosTau2|chr13 (16300954-16301208)
               

               
               322-576, gnl|Hg17|chr10 (13729042-13728789)
               

               
               322-576, gnl|Mm7|chr2 (4528238-4528491)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	1-228, gnl\|bosTau2\|chr13 (16284961-16285188)
	1-228, gnl\|Hg17\|chr10 (13738866-13738639)
	1-228, gnl\|Mm7\|chr2 (4521299-4521526)

	322-576, gnl\|bosTau2\|chr13 (16300954-16301208)
	322-576, gnl\|Hg17\|chr10 (13729042-13728789)
	322-576, gnl\|Mm7\|chr2 (4528238-4528491)