Non-Coding RNA Search

Ss1.1-Pig4-TMW8021M18.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCCTTGTATCAAGACCATTGTTTCA
TGTTAATGCAGCTGCTGAGAAGATTTTTTTTTTTTATGACTGAGAAAACTTGTTTACAGC
TCCAGCATATAAGGAAAGTGTTCAAGGCCAGATATGCCTCAGATATTTAACCAGTAAGCC
TTAGTTGTACATAAATACTTTTGTGTCAACAGAAACTTTCAGCTCTCACAGAAGACAGTT
ATTCAGCATTTTTTGATGTGCCACAGTTTCCAGTTTTTCCATATTTAATTTTTTTTGCTT
TACATCTAAGTTTGGGTTTGTATTTTTTCCTTCTAACTCTTCATGTGGCCGACTCCTCTG
TGTTCTCACAGTTTCCTTACTTACGGGAAGACTCCTGCTCTTCCGAGATCGTTGTCGTGT
GTTAGGCTCATGCTGTGTTTCCCCCCACCTGGAACTGAGTTGCTTGGTGGAACATTTGCT
TTCACTGTTTGTGCAATATGCATTTATCCCTTATATGAATGCTTTAAAGTCAGTTGAGAT
TAGATTCCTTTAAGTCCTATTTTCTGCCTTCATTGGTCACTTTTTTGTTTTTGTTTGTTT
TTTATTACTGTAGCATAAGATGTAGGTTCTATAATCTTCACGTCCATTTTAGCAGGTACT
GAGTGATGCTGTATATATAATTAAGTGTATCGTTTTGATTTTTAGACCACCACATGGCAT
GCTTGACTCTTTTCTTATTTCGAATGTCTGTTAATGCAAAATAGGTTACTCCATGATAGT
GTTAAAAGACAAAGTTTGCTAACAATGTGATATAAAGACTTTTAAAGTAACACATTATGT
GGAGCCCTATCTTTACAAAAGTTTTCTACTGTAAAATGCTTTTACGTTTATTCGCAGTTT
TCGTTTGATATTATCCAACCATAATTAAAGTTGCATAAGATAACTGCTTCACATTTCACA
TACCTGTATTTATCTGAGTGCTGTCTAAAATACTGTTGTGCTAGCCAAAGTAATGCTATG
AAATCATTTGCAGACTTAACCCAAGAGTTAATGTTAAATGCACTGTTATCGCCATGTGAA
GAGGCGTTGACTTTGATGCCACCATCGTGTTCAGACCATTTTATACATTTCAGTGGCCTT
TTTTTTAAATAAAAAAAAAAAAAAGCAAAACCAAGTACATAGTGAAGATGGCTTTTATTT
GGACAAATAGCTTTTATATTTTCATTAAACCATGCAAAAAATACTATATCTTTCTGGCAC
ATAACTGTCTCCTTAACCACTGAACAGTTCAGCCGTTTGAATAAATTGTACATTGTAAAG
CTTATAGTAGCTAATTGTATTATTGATTGTATTGTATACTATATTAAATGTGAATTTGTA
CCCCTTCATTTTAAAAGGTCATTGTGTTCTACTGCCTATTTTAGATTACTTTTGGGTTGG
GAAAGGGTGTTTTGGTAAGCAGGATTTTAAGTCCTTTCTTGATTGGTTTTATGAAGATAT
AAGGTTATGCTCTTACTACCAAGCTCAGGATTCTTGATTTTTAAAGGTACAAGGATAGTT
GTGGGATTTTTATTTTTTGGTTATATTTGAACTGTATGAATGGTGGGTCTGAATATAGAG
AATTTCCATGGTCTTATGTGGACGTAAAATGAGAAGATAATTGACCAGTTTGAGTGACTG
CAACATGCTCTGGTTGCACAGCAGTTAGGCATGCTCAGGCTTATATTTGTGACGTTCGGA
TGCCTGTGAAGAATGATTAAATACATGTTTCTAATATTGTAGTGTTTTGTATTTAGGTTA
TTTATTCTTTGTATCTAAAACTGAACAGCTACTGTGCTATATTATTGGTAGTATTGAGCA
GACCTTGTTTCTGCATGAAACTAGTTGCAAAACCCACTATTTTGGAAAGAAAAATGTATT
TTGACATATACAAATAAAAAGAATAAAACTATTTTAAATGTGTGAACTTTTACTGAAGAC
ATTCAACATTTTGTTCTGAGATATTTAAATTGTGCATGGGTATTTTTTTCACTAATTGCT
TTCCTTGGATTCCAGTTGGAATAATTTTCGAAATTGTAATATTGTGATAATTTGCACAAC
GTTGTACATGCACATCTGTAAATGCAGTCTTCATTGCTGTATTTATGCAGTCTGTATCAA
TTTGGACAAATGTTTATATATTTTACATAAAGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCCTTGTATCAAGACCATTGTTTCA
TGTTAATGCAGCTGCTGAGAAGATTTTTTTTTTTTATGACTGAGAAAACTTGTTTACAGC
TCCAGCATATAAGGAAAGTGTTCAAGGCCAGATATGCCTCAGATATTTAACCAGTAAGCC
TTAGTTGTACATAAATACTTTTGTGTCAACAGAAACTTTCAGCTCTCACAGAAGACAGTT
ATTCAGCATTTTTTGATGTGCCACAGTTTCCAGTTTTTCCATATTTAATTTTTTTTGCTT
TACATCTAAGTTTGGGTTTGTATTTTTTCCTTCTAACTCTTCATGTGGCCGACTCCTCTG
TGTTCTCACAGTTTCCTTACTTACGGGAAGACTCCTGCTCTTCCGAGATCGTTGTCGTGT
GTTAGGCTCATGCTGTGTTTCCCCCCACCTGGAACTGAGTTGCTTGGTGGAACATTTGCT
TTCACTGTTTGTGCAATATGCATTTATCCCTTATATGAATGCTTTAAAGTCAGTTGAGAT
TAGATTCCTTTAAGTCCTATTTTCTGCCTTCATTGGTCACTTTTTTGTTTTTGTTTGTTT
TTTATTACTGTAGCATAAGATGTAGGTTCTATAATCTTCACGTCCATTTTAGCAGGTACT
GAGTGATGCTGTATATATAATTAAGTGTATCGTTTTGATTTTTAGACCACCACATGGCAT
GCTTGACTCTTTTCTTATTTCGAATGTCTGTTAATGCAAAATAGGTTACTCCATGATAGT
GTTAAAAGACAAAGTTTGCTAACAATGTGATATAAAGACTTTTAAAGTAACACATTATGT
GGAGCCCTATCTTTACAAAAGTTTTCTACTGTAAAATGCTTTTACGTTTATTCGCAGTTT
TCGTTTGATATTATCCAACCATAATTAAAGTTGCATAAGATAACTGCTTCACATTTCACA
TACCTGTATTTATCTGAGTGCTGTCTAAAATACTGTTGTGCTAGCCAAAGTAATGCTATG
AAATCATTTGCAGACTTAACCCAAGAGTTAATGTTAAATGCACTGTTATCGCCATGTGAA
GAGGCGTTGACTTTGATGCCACCATCGTGTTCAGACCATTTTATACATTTCAGTGGCCTT
TTTTTTAAATAAAAAAAAAAAAAAGCAAAACCAAGTACATAGTGAAGATGGCTTTTATTT
GGACAAATAGCTTTTATATTTTCATTAAACCATGCAAAAAATACTATATCTTTCTGGCAC
ATAACTGTCTCCTTAACCACTGAACAGTTCAGCCGTTTGAATAAATTGTACATTGTAAAG
CTTATAGTAGCTAATTGTATTATTGATTGTATTGTATACTATATTAAATGTGAATTTGTA
CCCCTTCATTTTAAAAGGTCATTGTGTTCTACTGCCTATTTTAGATTACTTTTGGGTTGG
GAAAGGGTGTTTTGGTAAGCAGGATTTTAAGTCCTTTCTTGATTGGTTTTATGAAGATAT
AAGGTTATGCTCTTACTACCAAGCTCAGGATTCTTGATTTTTAAAGGTACAAGGATAGTT
GTGGGATTTTTATTTTTTGGTTATATTTGAACTGTATGAATGGTGGGTCTGAATATAGAG
AATTTCCATGGTCTTATGTGGACGTAAAATGAGAAGATAATTGACCAGTTTGAGTGACTG
CAACATGCTCTGGTTGCACAGCAGTTAGGCATGCTCAGGCTTATATTTGTGACGTTCGGA
TGCCTGTGAAGAATGATTAAATACATGTTTCTAATATTGTAGTGTTTTGTATTTAGGTTA
TTTATTCTTTGTATCTAAAACTGAACAGCTACTGTGCTATATTATTGGTAGTATTGAGCA
GACCTTGTTTCTGCATGAAACTAGTTGCAAAACCCACTATTTTGGAAAGAAAAATGTATT
TTGACATATACAAATAAAAAGAATAAAACTATTTTAAATGTGTGAACTTTTACTGAAGAC
ATTCAACATTTTGTTCTGAGATATTTAAATTGTGCATGGGTATTTTTTTCACTAATTGCT
TTCCTTGGATTCCAGTTGGAATAATTTTCGAAATTGTAATATTGTGATAATTTGCACAAC
GTTGTACATGCACATCTGTAAATGCAGTCTTCATTGCTGTATTTATGCAGTCTGTATCAA
TTTGGACAAATGTTTATATATTTTACATAAAGCTGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               112-231, - strand, RNAz p=0.818094
               

               
               1724-1843, - strand, RNAz p=0.902384

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-231, - strand, RNAz p=0.818094
               

               
               1724-1843, - strand, RNAz p=0.902384

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

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               1806-1907, + strand, RNAmicro p=0.996995
               

               
               52-166, + strand, RNAmicro p=0.968815

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1806-1907, + strand, RNAmicro p=0.996995
               

               
               52-166, + strand, RNAmicro p=0.968815

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-2194, gnl|bosTau2|chr5 (5468077-5465886)
               

               
               4-2194, gnl|Hg17|chr12 (78672016-78669830)
               

               
               4-2194, gnl|Mm7|chr10 (107739932-107742115)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-2194, gnl|bosTau2|chr5 (5468077-5465886)
               

               
               4-2194, gnl|Hg17|chr12 (78672016-78669830)
               

               
               4-2194, gnl|Mm7|chr10 (107739932-107742115)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

Help | Less info


               
               rec (0.519211)
               

               
               ldo (0.485013)
               

               
               ski (0.440205)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               cbl (0.344392)
               

               
               fco (0.314416)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               ldo (0.485013)
               

               
               ski (0.440205)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               cbl (0.344392)
               

               
               fco (0.314416)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	112-231, - strand, RNAz p=0.818094
	1724-1843, - strand, RNAz p=0.902384

	1806-1907, + strand, RNAmicro p=0.996995
	52-166, + strand, RNAmicro p=0.968815

	4-2194, gnl\|bosTau2\|chr5 (5468077-5465886)
	4-2194, gnl\|Hg17\|chr12 (78672016-78669830)
	4-2194, gnl\|Mm7\|chr10 (107739932-107742115)

	rec (0.519211)
	ldo (0.485013)
	ski (0.440205)
	liv (0.438853)
	lin (0.436808)
	ret (0.3862)
	elu (0.385356)
	thg (0.380373)
	cbl (0.344392)
	fco (0.314416)
	spl (0.286369)
	lyg (0.266205)
	ova (0.258264)
	sug (0.254582)
	bla (0.248694)
	cbe (0.239234)
	hea (0.204499)
	aor (0.195274)
	col (0.195008)
	nlu (0.191681)
	sag (0.182715)
	gul (0.177588)
	sin (0.174948)
	nco (0.161734)
	bfe (0.149858)
	hyp (0.142837)
	ese (0.126502)
	tra (0.123092)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)