Non-Coding RNA Search

Ss1.1-Pig4-TMW8021O11.3

Sequence:


               
               CTGATGTCATCCCACATGGGTACAGGTGTTACACAGCTCTGCCTGGCCCAGCAGGAAAGC
CAGATGGGACCAGTGTGTCTGTTACGAAATCACTAACTGCATACCTGACTGACAGGCAGG
CAGGTCATTTCTGGGGAAGGTCTCCAGCTGGACTCAGCTTTTGGGAGGAAGCACACAGAG
GAAGGAGGGAAGGGAAGCCACCAAGCTGGCCGGTCCTCTCTGGAGGGGGAGGGGTGGCAG
GTCACGTGACCTGCAGGCCATCACTGCCTTGTGCTTCCTTGCTGCCATGGCATTTCATTC
CACACGCTCCTAAGTCCCAGATCCCCTCCTACGGTTTGTATCACATGTGCTTCTTCTGAT
TGAATCCAGATGTCCCGAGACGTCAAGGCTGATTTCTCGTGGGGATGTATCTGTACGTGT
TTGCGGTCATGCTGTGAGAAGTTAAATGTGTGAGCTGGAAAATGCTATGGGCAGAGAATA
ATAAAAAGGAAAGTCTTCCTGTTTTCCTGCAGTGGGAACTGACTGTGTAGTCTTAACAGC
CTTTTGTACAAATATCTGCAAACCAGATAACTTCCCCATCCAGCGCTTGTTCTTGGAATT
GTGTCTAAATACATCCAGCATACAATAAAAAAAATACTGAAATGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGATGTCATCCCACATGGGTACAGGTGTTACACAGCTCTGCCTGGCCCAGCAGGAAAGC
CAGATGGGACCAGTGTGTCTGTTACGAAATCACTAACTGCATACCTGACTGACAGGCAGG
CAGGTCATTTCTGGGGAAGGTCTCCAGCTGGACTCAGCTTTTGGGAGGAAGCACACAGAG
GAAGGAGGGAAGGGAAGCCACCAAGCTGGCCGGTCCTCTCTGGAGGGGGAGGGGTGGCAG
GTCACGTGACCTGCAGGCCATCACTGCCTTGTGCTTCCTTGCTGCCATGGCATTTCATTC
CACACGCTCCTAAGTCCCAGATCCCCTCCTACGGTTTGTATCACATGTGCTTCTTCTGAT
TGAATCCAGATGTCCCGAGACGTCAAGGCTGATTTCTCGTGGGGATGTATCTGTACGTGT
TTGCGGTCATGCTGTGAGAAGTTAAATGTGTGAGCTGGAAAATGCTATGGGCAGAGAATA
ATAAAAAGGAAAGTCTTCCTGTTTTCCTGCAGTGGGAACTGACTGTGTAGTCTTAACAGC
CTTTTGTACAAATATCTGCAAACCAGATAACTTCCCCATCCAGCGCTTGTTCTTGGAATT
GTGTCTAAATACATCCAGCATACAATAAAAAAAATACTGAAATGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-95, - strand, RNAz p=0.810305

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-95, - strand, RNAz p=0.810305

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014766, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014766, -

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-150, gnl|bosTau2|chr4 (37056145-37055996)
               

               
               1-150, gnl|canFam2|chr14 (45677098-45677590)
               

               
               1-150, gnl|dasNov1|scaffold_8120 (1016-1462)
               

               
               1-150, gnl|echTel1|scaffold_232420 (3201-2742)
               

               
               1-150, gnl|hg17|chr7 (29733324-29733807)
               

               
               1-150, gnl|Hg17|chr7 (29733616-29733467)
               

               
               1-150, gnl|mm7|chr6 (54469592-54469967)
               

               
               1-150, gnl|oryCun1|scaffold_207221 (55898-56331)
               

               
               1-150, gnl|panTro1|chr6 (30846502-30846985)
               

               
               1-150, gnl|rheMac2|chr3 (96285203-96284721)
               

               
               1-150, gnl|rn3|chr4 (83194576-83194949)
               


               
               270-646, gnl|bosTau2|chr4 (37055920-37055543)
               

               
               270-646, gnl|Hg17|chr7 (29733346-29732965)
               

               
               270-646, gnl|Mm7|chr6 (54469614-54469262)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-150, gnl|bosTau2|chr4 (37056145-37055996)
               

               
               1-150, gnl|canFam2|chr14 (45677098-45677590)
               

               
               1-150, gnl|dasNov1|scaffold_8120 (1016-1462)
               

               
               1-150, gnl|echTel1|scaffold_232420 (3201-2742)
               

               
               1-150, gnl|hg17|chr7 (29733324-29733807)
               

               
               1-150, gnl|Hg17|chr7 (29733616-29733467)
               

               
               1-150, gnl|mm7|chr6 (54469592-54469967)
               

               
               1-150, gnl|oryCun1|scaffold_207221 (55898-56331)
               

               
               1-150, gnl|panTro1|chr6 (30846502-30846985)
               

               
               1-150, gnl|rheMac2|chr3 (96285203-96284721)
               

               
               1-150, gnl|rn3|chr4 (83194576-83194949)
               


               
               270-646, gnl|bosTau2|chr4 (37055920-37055543)
               

               
               270-646, gnl|Hg17|chr7 (29733346-29732965)
               

               
               270-646, gnl|Mm7|chr6 (54469614-54469262)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cte (0.29274)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

	1-150, gnl\|bosTau2\|chr4 (37056145-37055996)
	1-150, gnl\|canFam2\|chr14 (45677098-45677590)
	1-150, gnl\|dasNov1\|scaffold_8120 (1016-1462)
	1-150, gnl\|echTel1\|scaffold_232420 (3201-2742)
	1-150, gnl\|hg17\|chr7 (29733324-29733807)
	1-150, gnl\|Hg17\|chr7 (29733616-29733467)
	1-150, gnl\|mm7\|chr6 (54469592-54469967)
	1-150, gnl\|oryCun1\|scaffold_207221 (55898-56331)
	1-150, gnl\|panTro1\|chr6 (30846502-30846985)
	1-150, gnl\|rheMac2\|chr3 (96285203-96284721)
	1-150, gnl\|rn3\|chr4 (83194576-83194949)

	270-646, gnl\|bosTau2\|chr4 (37055920-37055543)
	270-646, gnl\|Hg17\|chr7 (29733346-29732965)
	270-646, gnl\|Mm7\|chr6 (54469614-54469262)