Ss1.1-Pig4-TMW8021O14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGAAGACATGTGGCGGGCCTTTGGAGCTGTCCCACCTGCACTCCTTTGTGAGCTCCC AGCCGGCAGGCCTGGAATTCCAGTGCTCCGAGGGTGGGGAGAATCTCAGCGTGGGCCAGC GGCAGCTCGTGTGCCTGGCCAGAGCCCTGCTTCGTAAGAGCCGCATCCTGGTTTTAGATG AGGCCACAGCCGCCATCGACCTGGAGACGGACGACCTCATCCAGGCCACCATCCGCACCC AGTTCGAGGCCTGCACGGTGCTGACCATCGCGCATCGGCTCAACACCATCATGGACTACA CCAGGGTCCTCGTCCTGGACAAAGGGACAATAGCTGAGTTTGATTCTCCAACCAACCTCA TTGCAGCCAGAGGCATCTTCTACGGGATGGCCAGAGATGCTGGACTTGCCTAAAATATAC TCCTGGGATTTCTTCTTGGACATTCCCGGTTTTCATCAGGAAAGGACACCAAATCTATCC ATAAAATGGACTTGATGGCAAATGTTGTGGGGCGGTTGTTAGGTTTTTGCCTCTGTAAAG TGCCTTGCAGGATAACCAGGCTACATGCTTCTGATAAGGAAGTGCAGCCCAAGAGGTGAA TGACATGCCCCAAGGTCATAGCTAATTTGAGGCAGAGCCCGGACTAGTCCCTGGGTCTCC TGACTCCTAATCTGAGGTTATTTCCACACTGTACTGTTTTCAGTGGTTTCATGGGATGAC CTCCCTATCCCCAAGCTTTTTTATATTTTCAACTCTGAGGATTTTTTTTTTTTTTAATAA AGCTTCTTCCTCCTGGAACAGAGGCTGCCAGGTCAGGCTGTCCCTAGGAACTGAGTCCAG TACTCTGGGGTGCTGGCCTGGATCCATTAAAAATGGAGCACTGATGAAATAAAGCTATGT GTCAACAATACACATGCCCCAACACAGCTTTTCTCTGTTTACAAGGTCTGGGGTTAGGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGAAGACATGTGGCGGGCCTTTGGAGCTGTCCCACCTGCACTCCTTTGTGAGCTCCC AGCCGGCAGGCCTGGAATTCCAGTGCTCCGAGGGTGGGGAGAATCTCAGCGTGGGCCAGC GGCAGCTCGTGTGCCTGGCCAGAGCCCTGCTTCGTAAGAGCCGCATCCTGGTTTTAGATG AGGCCACAGCCGCCATCGACCTGGAGACGGACGACCTCATCCAGGCCACCATCCGCACCC AGTTCGAGGCCTGCACGGTGCTGACCATCGCGCATCGGCTCAACACCATCATGGACTACA CCAGGGTCCTCGTCCTGGACAAAGGGACAATAGCTGAGTTTGATTCTCCAACCAACCTCA TTGCAGCCAGAGGCATCTTCTACGGGATGGCCAGAGATGCTGGACTTGCCTAAAATATAC TCCTGGGATTTCTTCTTGGACATTCCCGGTTTTCATCAGGAAAGGACACCAAATCTATCC ATAAAATGGACTTGATGGCAAATGTTGTGGGGCGGTTGTTAGGTTTTTGCCTCTGTAAAG TGCCTTGCAGGATAACCAGGCTACATGCTTCTGATAAGGAAGTGCAGCCCAAGAGGTGAA TGACATGCCCCAAGGTCATAGCTAATTTGAGGCAGAGCCCGGACTAGTCCCTGGGTCTCC TGACTCCTAATCTGAGGTTATTTCCACACTGTACTGTTTTCAGTGGTTTCATGGGATGAC CTCCCTATCCCCAAGCTTTTTTATATTTTCAACTCTGAGGATTTTTTTTTTTTTTAATAA AGCTTCTTCCTCCTGGAACAGAGGCTGCCAGGTCAGGCTGTCCCTAGGAACTGAGTCCAG TACTCTGGGGTGCTGGCCTGGATCCATTAAAAATGGAGCACTGATGAAATAAAGCTATGT GTCAACAATACACATGCCCCAACACAGCTTTTCTCTGTTTACAAGGTCTGGGGTTAGGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 2-109, + strand, RNAz p=0.769856 | |
| 146-327, + strand, RNAz p=0.81303 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-109, + strand, RNAz p=0.769856 | |
| 146-327, + strand, RNAz p=0.81303 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_020037, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 2-109, gnl|bosTau2|chr19 (27900329-27900435) | |
| 2-109, gnl|canFam2|chr9 (29913966-29914175) | |
| 2-109, gnl|danRer3|chr3 (32431874-32432051) | |
| 2-109, gnl|dasNov1|scaffold_95450 (6609-6389) | |
| 2-109, gnl|echTel1|scaffold_37991 (4389-4593) | |
| 2-109, gnl|fr1|chrUn (261624236-261624447) | |
| 2-109, gnl|galGal2|chr3_random (855095-854912) | |
| 2-109, gnl|hg17|chr17 (46117038-46117245) | |
| 2-109, gnl|Hg17|chr17 (46117129-46117235) | |
| 2-109, gnl|loxAfr1|scaffold_10464 (69848-69641) | |
| 2-109, gnl|mm7|chr11 (94460172-94459968) | |
| 2-109, gnl|Mm7|chr11 (94460081-94459975) | |
| 2-109, gnl|monDom2|scaffold_124 (2889836-2889627) | |
| 2-109, gnl|oryCun1|scaffold_213401 (178155-178362) | |
| 2-109, gnl|panTro1|chr19_random (31755408-31755615) | |
| 2-109, gnl|rheMac2|chr16 (34929075-34929282) | |
| 2-109, gnl|rn3|chr10 (83005496-83005292) | |
| 2-109, gnl|tetNig1|chrUn_random (22912634-22912809) | |
| 2-109, gnl|xenTro1|scaffold_135 (1076329-1076159) | |
| 146-327, gnl|bosTau2|chr18 (17650600-17650781) | |
| 146-327, gnl|canFam2|chr2 (69764147-69763962) | |
| 146-327, gnl|danRer3|chr7 (28342587-28342767) | |
| 146-327, gnl|dasNov1|scaffold_11869 (5616-5801) | |
| 146-327, gnl|echTel1|scaffold_275836 (6712-6897) | |
| 146-327, gnl|fr1|chrUn (293390738-293390564) | |
| 146-327, gnl|hg17|chr16 (46758905-46759090) | |
| 146-327, gnl|Hg17|chr16 (46759091-46758910) | |
| 146-327, gnl|loxAfr1|scaffold_105092 (1214-1021) | |
| 146-327, gnl|mm7|chr8 (85095961-85096146) | |
| 146-327, gnl|Mm7|chr8 (85096143-85095966) | |
| 146-327, gnl|monDom2|scaffold_35 (12410861-12411039) | |
| 146-327, gnl|oryCun1|scaffold_200975 (37101-37281) | |
| 146-327, gnl|panTro1|chrUn_random (10563934-10564119) | |
| 146-327, gnl|rheMac2|chr20 (46357044-46357229) | |
| 146-327, gnl|rn3|chr19 (21967032-21966847) | |
| 146-327, gnl|tetNig1|chrUn_random (136290652-136290482) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-109, gnl|bosTau2|chr19 (27900329-27900435) | |
| 2-109, gnl|canFam2|chr9 (29913966-29914175) | |
| 2-109, gnl|danRer3|chr3 (32431874-32432051) | |
| 2-109, gnl|dasNov1|scaffold_95450 (6609-6389) | |
| 2-109, gnl|echTel1|scaffold_37991 (4389-4593) | |
| 2-109, gnl|fr1|chrUn (261624236-261624447) | |
| 2-109, gnl|galGal2|chr3_random (855095-854912) | |
| 2-109, gnl|hg17|chr17 (46117038-46117245) | |
| 2-109, gnl|Hg17|chr17 (46117129-46117235) | |
| 2-109, gnl|loxAfr1|scaffold_10464 (69848-69641) | |
| 2-109, gnl|mm7|chr11 (94460172-94459968) | |
| 2-109, gnl|Mm7|chr11 (94460081-94459975) | |
| 2-109, gnl|monDom2|scaffold_124 (2889836-2889627) | |
| 2-109, gnl|oryCun1|scaffold_213401 (178155-178362) | |
| 2-109, gnl|panTro1|chr19_random (31755408-31755615) | |
| 2-109, gnl|rheMac2|chr16 (34929075-34929282) | |
| 2-109, gnl|rn3|chr10 (83005496-83005292) | |
| 2-109, gnl|tetNig1|chrUn_random (22912634-22912809) | |
| 2-109, gnl|xenTro1|scaffold_135 (1076329-1076159) | |
| 146-327, gnl|bosTau2|chr18 (17650600-17650781) | |
| 146-327, gnl|canFam2|chr2 (69764147-69763962) | |
| 146-327, gnl|danRer3|chr7 (28342587-28342767) | |
| 146-327, gnl|dasNov1|scaffold_11869 (5616-5801) | |
| 146-327, gnl|echTel1|scaffold_275836 (6712-6897) | |
| 146-327, gnl|fr1|chrUn (293390738-293390564) | |
| 146-327, gnl|hg17|chr16 (46758905-46759090) | |
| 146-327, gnl|Hg17|chr16 (46759091-46758910) | |
| 146-327, gnl|loxAfr1|scaffold_105092 (1214-1021) | |
| 146-327, gnl|mm7|chr8 (85095961-85096146) | |
| 146-327, gnl|Mm7|chr8 (85096143-85095966) | |
| 146-327, gnl|monDom2|scaffold_35 (12410861-12411039) | |
| 146-327, gnl|oryCun1|scaffold_200975 (37101-37281) | |
| 146-327, gnl|panTro1|chrUn_random (10563934-10564119) | |
| 146-327, gnl|rheMac2|chr20 (46357044-46357229) | |
| 146-327, gnl|rn3|chr19 (21967032-21966847) | |
| 146-327, gnl|tetNig1|chrUn_random (136290652-136290482) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cje (0.165235) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) |