Non-Coding RNA Search

Ss1.1-Pig4-TMW8022A03.3

Sequence:


               
               AAAGTCATTTGCAATACCAAGTACAACATGGTTTAATGGAATTAATAGATTTAAAAAGAA
AGCAAAACATTGATGGGGATTCAGTGTGAAGTTGGCAGAGGCTGCCAAAGTTGAAACAAT
TTAAAAGTGCTGGAGCAAAGGTGCAAGTTCAAATGCTAAAGATAAAAATAAATTTGTAAC
AAATCATCTCCTTTAGCCCTTTTGATTTTAGCCCGTTAGTTTTGACTCTGCTTTACATTT
AATCTTGACAGTATAAACTTTTGTTTGCCATTAATTCATCTTTTTATATAGAGGACATTA
CAATCACAGGTTGATAAAATATCTCTGCCCATTAGAATGAAATGCAGTCATTTGAAATGA
GAAGGACAAGGACCCTGTTTTGTACCTCACCCTGTTTGCAGAGTGAAGGTGAGGGCTACA
CGGATATCCTTGATGCCAATTTTGTATGTTGATCATTCCAAACTGAGAAGAATAATGCCA
AATTTTAGACATATTTAAAGAAGCTATTAGAGGTATGTGTCTAAAATTCATAGGGCAACT
TCTGAGAAGAAACACTGTCTTTCTTTTTTTAACTGAAAGTGACAATGTGACACTTGTCAT
GTTGTGTCCAGTGACGCAGAGTAACTGAGGTAATCTGACTGTTGCACTATGTGACATATT
TAAGGACGTACTTGCTGCATTTGCAGCAGCCCTCTGTCCTTTCCCACATTTCTGCTGTTG
CTGCAACTTGAGTTAATTGTGACAAATGCATCTTTGTGTTATATTTTGTTTGCTTCATAA
TTTCCAGAACTATATATAAATATATTTTTTAAATAGCAAATATCGTAGTTAGTGATGACC
ACTCCAACCTTATCCCTACCATATTGGTTTCAGGGGTAGGATTAAGAGTGTCTTTGGAAG
AAAAAAGAAAAAACCCTGTGGTTTAGAAGGATGCTGAAGCCTTAGGCTGTGGGCCTAAAA
CAACCATGTGAGTGAATTGACCCATCTCATACCTTGAATCAAGCATGCATTCCTTTTCTC
ATTGTGCAAGTGTCCCCAGTTGTTTTCCTTCAGTGTTCTTGTCCTTTTAAATTTTATTAT
ATTTTGCTCTCCCTAACATCTGTTTTTTATAAAATAAAATAAAAAAAAATAAAAAAGTAA
GAAATAAACTATACCCTGATTGCCTCTGGATACTCACAAGCAGGGTTATGTTCCTTCATC
TTGGGCTTGCTTGCCTAAATGGAAGGATTGACTTTATTTTGTACCTCCTTCTGTGCGTGG
GACAGTCCAGGGTGCAGAGCCAGGAATTGCTTCTAATTGCACCTGCTATACTTAAATGTA
TAGTCCTAGGCTCAATCACACTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGTCATTTGCAATACCAAGTACAACATGGTTTAATGGAATTAATAGATTTAAAAAGAA
AGCAAAACATTGATGGGGATTCAGTGTGAAGTTGGCAGAGGCTGCCAAAGTTGAAACAAT
TTAAAAGTGCTGGAGCAAAGGTGCAAGTTCAAATGCTAAAGATAAAAATAAATTTGTAAC
AAATCATCTCCTTTAGCCCTTTTGATTTTAGCCCGTTAGTTTTGACTCTGCTTTACATTT
AATCTTGACAGTATAAACTTTTGTTTGCCATTAATTCATCTTTTTATATAGAGGACATTA
CAATCACAGGTTGATAAAATATCTCTGCCCATTAGAATGAAATGCAGTCATTTGAAATGA
GAAGGACAAGGACCCTGTTTTGTACCTCACCCTGTTTGCAGAGTGAAGGTGAGGGCTACA
CGGATATCCTTGATGCCAATTTTGTATGTTGATCATTCCAAACTGAGAAGAATAATGCCA
AATTTTAGACATATTTAAAGAAGCTATTAGAGGTATGTGTCTAAAATTCATAGGGCAACT
TCTGAGAAGAAACACTGTCTTTCTTTTTTTAACTGAAAGTGACAATGTGACACTTGTCAT
GTTGTGTCCAGTGACGCAGAGTAACTGAGGTAATCTGACTGTTGCACTATGTGACATATT
TAAGGACGTACTTGCTGCATTTGCAGCAGCCCTCTGTCCTTTCCCACATTTCTGCTGTTG
CTGCAACTTGAGTTAATTGTGACAAATGCATCTTTGTGTTATATTTTGTTTGCTTCATAA
TTTCCAGAACTATATATAAATATATTTTTTAAATAGCAAATATCGTAGTTAGTGATGACC
ACTCCAACCTTATCCCTACCATATTGGTTTCAGGGGTAGGATTAAGAGTGTCTTTGGAAG
AAAAAAGAAAAAACCCTGTGGTTTAGAAGGATGCTGAAGCCTTAGGCTGTGGGCCTAAAA
CAACCATGTGAGTGAATTGACCCATCTCATACCTTGAATCAAGCATGCATTCCTTTTCTC
ATTGTGCAAGTGTCCCCAGTTGTTTTCCTTCAGTGTTCTTGTCCTTTTAAATTTTATTAT
ATTTTGCTCTCCCTAACATCTGTTTTTTATAAAATAAAATAAAAAAAAATAAAAAAGTAA
GAAATAAACTATACCCTGATTGCCTCTGGATACTCACAAGCAGGGTTATGTTCCTTCATC
TTGGGCTTGCTTGCCTAAATGGAAGGATTGACTTTATTTTGTACCTCCTTCTGTGCGTGG
GACAGTCCAGGGTGCAGAGCCAGGAATTGCTTCTAATTGCACCTGCTATACTTAAATGTA
TAGTCCTAGGCTCAATCACACTAT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               73-184, - strand, RNAz p=0.60853
               

               
               303-915, - strand, RNAz p=0.98284
               

               
               1109-1344, + strand, RNAz p=0.851545

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-184, - strand, RNAz p=0.60853
               

               
               303-915, - strand, RNAz p=0.98284
               

               
               1109-1344, + strand, RNAz p=0.851545

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               473-594, - strand, RNAmicro p=0.999798
               

               
               487-570, + strand, RNAmicro p=0.9996
               

               
               1213-1340, + strand, RNAmicro p=0.999182

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               473-594, - strand, RNAmicro p=0.999798
               

               
               487-570, + strand, RNAmicro p=0.9996
               

               
               1213-1340, + strand, RNAmicro p=0.999182

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1344, gnl|bosTau2|chr10 (49191402-49190065)
               

               
               3-1344, gnl|Hg17|chr14 (62910545-62909192)
               

               
               3-1344, gnl|Mm7|chr12 (73410361-73409163)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1344, gnl|bosTau2|chr10 (49191402-49190065)
               

               
               3-1344, gnl|Hg17|chr14 (62910545-62909192)
               

               
               3-1344, gnl|Mm7|chr12 (73410361-73409163)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               csp (0.161186)
               

               
               lin (0.145603)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               csp (0.161186)
               

               
               lin (0.145603)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	73-184, - strand, RNAz p=0.60853
	303-915, - strand, RNAz p=0.98284
	1109-1344, + strand, RNAz p=0.851545

	473-594, - strand, RNAmicro p=0.999798
	487-570, + strand, RNAmicro p=0.9996
	1213-1340, + strand, RNAmicro p=0.999182

	3-1344, gnl\|bosTau2\|chr10 (49191402-49190065)
	3-1344, gnl\|Hg17\|chr14 (62910545-62909192)
	3-1344, gnl\|Mm7\|chr12 (73410361-73409163)

	mgp (0.230681)
	hea (0.204499)
	csp (0.161186)
	lin (0.145603)
	ebs (0.118301)
	spc (0.113366)