Ss1.1-Pig4-TMW8022A14.3
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
ATACATCCCTGATGGGCATACAAAGGAAATGCCAACATCTGGGTCAAAGGAAAAGACCAA AGTAGAAACAGCAAAAAATGAGACAACTACTCCTCTTAAGACAAGATCACCGCCTTCTTT GAATAATACTTGTGCTGCCTCTGAGGACGCCTTGGTCCTTTACAACAGAGTGGCTGCCCA GGGGGATGTGGTCCGTGAATTAAAAGCCAAGAAAGCAGCAAAGGAGGATATAGATGCAGC TGTAAAACAACTTTTGGCTTTGAAGGCTGAGTATAAGGAGAAAACCGGCCAGGAATATAA ACCTGGAAGTCCTCCTGCTGCTGCAGTGCAGAATGTTTCTTCTGAATCATCATCGAGTGT CCTGGAAAGTAAATCTCTGTATGATGAGGTTGCTGCACAAGGGGAGGTGGTGCGTAAACT GAAAGCCGAAAAAGCCCCTAAGGCTAAAGTAAATGAAGCTGTAGAATGTTTACTGTCCCT GAAAGCTCAATATAAAGAAAAAACCGGGCAAGAGTACATTCCTGGTCAGCCCCCGTCATC TCAGAGTTCAGATTCAAGTCCAACCAGAAGCTGTGAGCCTAGTGGTCCAGAAACACCAGA AGCCAAGCTGCTTTTTGACAAAGTAGCTTCTCAGGGAGAAGTAGTTCGAAAACTTAAAGC TGAAAAAGCTTCTAAGGACCATGTAGACACCGCTGTGCAGGAACTCCTTCAGCTGAAGGC ACAGTACAAGTCTCTGACTGGAGTCGATTACAAGCCTGTCTCTGTCACTGGGGCTGAGGA CAGAGATAAGAAAAAGAAAGAAAAAGAAAACAAATCTGAAAAGCAGAACAAGCCCCAGAA GCAAAACGATGGCCAAAAGAAAGATGCTTCTAAAACCCCAGAGAGTGGGCTGTCACCAGG CGGCGCGGGGGAAGGACCGGGGCCGAAGAAGCAGACCAGGTTGGGTCTGGAGGCAAAAAA AGAAGAAAATCTTGCAGATTGGTATTCTCAAGTCATCACAAAGTCAGAAATGATTGAGTA CTATGATGTAAGTGGCTGCTATATCCTTCGTCCCTGGGCGTATTCCATTTGGGAATCCAT CAAGGACTTTTTTGATGCTGAGATCAAGAAACTTGGTGTTGAAAACTGCTATTTCCCCAT GTTTGTGTCTCAAGGTGCCTTAGAGACAGAGAAGACACACATTGCCGACTTCGCCCCTGA GGTTGCTTGGGTGACACGATCTGGCAAAACAGAGTTGGCAGAACCAATTGCCGTCCGTCC CACCAGTGAAACAGTAATGTACCCTGCATACGCGAAGTGGGTGCAGTCCCACAGAGACCT GCCCATCAGGCTCAACCAGTGGTGCAATGTGGTGCGCTGGGAGTTCAAGCATCCTCAGCC TTTCCTACGAACTCGGGAGTTCCTTTGGCAGGAAGGGCACAGTGCGTTTGCTACGTTTGA AGAGGCAGCAGAGGAGGTTTTGCAGATACTTGACTTATATGCGCAGGTGTATGAAGAACT CCTGGCAATTCCTGTTGTAAAGGGAAGAAAGACTGAAAAGGAGAAATTTGCAGGCGGAGA CTATACGACCACAGTAGAGGCATTTATATCTGCTAGTGGAAGAGCTATCCAGGGAGCAAC ATCACATCATTTAGGGCAGAATTTTTCTAAAATGTTTGAAATCGTTTTTGAAGATCCAAA GACACCAGGAGAGAAGCAGTTTGCTTATCAGAACTCCTGGGGCCTGACGACTCGAACTAT TGGTGTTATGACCATGGTTCATGGGGACAACATGGGCTTAGTCTTACCGCCTCGTGTAGC CTGTGTCCAGGTGGTGGTCATTCCTTGTGGCATTACAAATGCACTTGCTGAGGAAGACAG AGACGCTCTGATCGCCAAGTGCCATGATTACCGAAGGCGGCTGCTCAGTGTTAACATTCG CGTTCGAGTTGATTTGCGAGATAATTATTCTCCCGGCTGGAAGTTCAATCACTGGGAGCT CAAGGGCGTTCCAGTTAGACTTGAAGTTGGGCCACGTGACATGAAGAGCTGTCAGTTTGT AGCTGTCAGACGAGATACTGGAGAGAAGCTGACGCTTGCTGAAAACGAGGCTGAGACGAA ACTGCACGCTCTCCTGGAGGACATCCACGCCAACCTCTTCACACGGGCTTCTGAAGACCT TAAGGCTCATATGGTTGTGGCTAATACAATGGAAGACTTTCAGAAGGAGCTCGATTCTGG AAAGATTGTTCAGATTCCATTCTGTGGGGAAATTGACTGTGAAGACTGGATCAAAAAGAC CACTGCCAGGGATCAAGATCTGGAACCTGGCGCTCCGTCCATGGGAGCCAAAAGCCTCTG CATCCCCTTCAAACCGCTCTGCGAGCTGCAGCCTGCAGCCAAGTGCGTCTGCGGCAAGAA CCCCGCCAAGTTCTACACCTTGTTTGGTCGTAGTTACTAAGGGTTAAGCAAACCCCATCT CCAGCCCTCCTCGCTTTTTAAAGGATTGATCCTAGTCAGTTCCCAGACGTAGACAGTTTT ATGATTTTTTTAAAATAAAAGTTCTAAAAGGAGGTCACGTAAGACAGACACCTCTTCTTA TGTCTAAATTAACAATGGAGAAAAGACTTTTCTGTAAACAACCCCAGTAATAAATATCAT GAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
ATACATCCCTGATGGGCATACAAAGGAAATGCCAACATCTGGGTCAAAGGAAAAGACCAA AGTAGAAACAGCAAAAAATGAGACAACTACTCCTCTTAAGACAAGATCACCGCCTTCTTT GAATAATACTTGTGCTGCCTCTGAGGACGCCTTGGTCCTTTACAACAGAGTGGCTGCCCA GGGGGATGTGGTCCGTGAATTAAAAGCCAAGAAAGCAGCAAAGGAGGATATAGATGCAGC TGTAAAACAACTTTTGGCTTTGAAGGCTGAGTATAAGGAGAAAACCGGCCAGGAATATAA ACCTGGAAGTCCTCCTGCTGCTGCAGTGCAGAATGTTTCTTCTGAATCATCATCGAGTGT CCTGGAAAGTAAATCTCTGTATGATGAGGTTGCTGCACAAGGGGAGGTGGTGCGTAAACT GAAAGCCGAAAAAGCCCCTAAGGCTAAAGTAAATGAAGCTGTAGAATGTTTACTGTCCCT GAAAGCTCAATATAAAGAAAAAACCGGGCAAGAGTACATTCCTGGTCAGCCCCCGTCATC TCAGAGTTCAGATTCAAGTCCAACCAGAAGCTGTGAGCCTAGTGGTCCAGAAACACCAGA AGCCAAGCTGCTTTTTGACAAAGTAGCTTCTCAGGGAGAAGTAGTTCGAAAACTTAAAGC TGAAAAAGCTTCTAAGGACCATGTAGACACCGCTGTGCAGGAACTCCTTCAGCTGAAGGC ACAGTACAAGTCTCTGACTGGAGTCGATTACAAGCCTGTCTCTGTCACTGGGGCTGAGGA CAGAGATAAGAAAAAGAAAGAAAAAGAAAACAAATCTGAAAAGCAGAACAAGCCCCAGAA GCAAAACGATGGCCAAAAGAAAGATGCTTCTAAAACCCCAGAGAGTGGGCTGTCACCAGG CGGCGCGGGGGAAGGACCGGGGCCGAAGAAGCAGACCAGGTTGGGTCTGGAGGCAAAAAA AGAAGAAAATCTTGCAGATTGGTATTCTCAAGTCATCACAAAGTCAGAAATGATTGAGTA CTATGATGTAAGTGGCTGCTATATCCTTCGTCCCTGGGCGTATTCCATTTGGGAATCCAT CAAGGACTTTTTTGATGCTGAGATCAAGAAACTTGGTGTTGAAAACTGCTATTTCCCCAT GTTTGTGTCTCAAGGTGCCTTAGAGACAGAGAAGACACACATTGCCGACTTCGCCCCTGA GGTTGCTTGGGTGACACGATCTGGCAAAACAGAGTTGGCAGAACCAATTGCCGTCCGTCC CACCAGTGAAACAGTAATGTACCCTGCATACGCGAAGTGGGTGCAGTCCCACAGAGACCT GCCCATCAGGCTCAACCAGTGGTGCAATGTGGTGCGCTGGGAGTTCAAGCATCCTCAGCC TTTCCTACGAACTCGGGAGTTCCTTTGGCAGGAAGGGCACAGTGCGTTTGCTACGTTTGA AGAGGCAGCAGAGGAGGTTTTGCAGATACTTGACTTATATGCGCAGGTGTATGAAGAACT CCTGGCAATTCCTGTTGTAAAGGGAAGAAAGACTGAAAAGGAGAAATTTGCAGGCGGAGA CTATACGACCACAGTAGAGGCATTTATATCTGCTAGTGGAAGAGCTATCCAGGGAGCAAC ATCACATCATTTAGGGCAGAATTTTTCTAAAATGTTTGAAATCGTTTTTGAAGATCCAAA GACACCAGGAGAGAAGCAGTTTGCTTATCAGAACTCCTGGGGCCTGACGACTCGAACTAT TGGTGTTATGACCATGGTTCATGGGGACAACATGGGCTTAGTCTTACCGCCTCGTGTAGC CTGTGTCCAGGTGGTGGTCATTCCTTGTGGCATTACAAATGCACTTGCTGAGGAAGACAG AGACGCTCTGATCGCCAAGTGCCATGATTACCGAAGGCGGCTGCTCAGTGTTAACATTCG CGTTCGAGTTGATTTGCGAGATAATTATTCTCCCGGCTGGAAGTTCAATCACTGGGAGCT CAAGGGCGTTCCAGTTAGACTTGAAGTTGGGCCACGTGACATGAAGAGCTGTCAGTTTGT AGCTGTCAGACGAGATACTGGAGAGAAGCTGACGCTTGCTGAAAACGAGGCTGAGACGAA ACTGCACGCTCTCCTGGAGGACATCCACGCCAACCTCTTCACACGGGCTTCTGAAGACCT TAAGGCTCATATGGTTGTGGCTAATACAATGGAAGACTTTCAGAAGGAGCTCGATTCTGG AAAGATTGTTCAGATTCCATTCTGTGGGGAAATTGACTGTGAAGACTGGATCAAAAAGAC CACTGCCAGGGATCAAGATCTGGAACCTGGCGCTCCGTCCATGGGAGCCAAAAGCCTCTG CATCCCCTTCAAACCGCTCTGCGAGCTGCAGCCTGCAGCCAAGTGCGTCTGCGGCAAGAA CCCCGCCAAGTTCTACACCTTGTTTGGTCGTAGTTACTAAGGGTTAAGCAAACCCCATCT CCAGCCCTCCTCGCTTTTTAAAGGATTGATCCTAGTCAGTTCCCAGACGTAGACAGTTTT ATGATTTTTTTAAAATAAAAGTTCTAAAAGGAGGTCACGTAAGACAGACACCTCTTCTTA TGTCTAAATTAACAATGGAGAAAAGACTTTTCTGTAAACAACCCCAGTAATAAATATCAT GAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
160-1458, - strand, RNAz p=0.991919 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
160-1458, - strand, RNAz p=0.991919 |
Aligned organism(s): 68 entry(ies) | More info |
Aligned organism(s): 68 entry(ies) | Help | Less info |
81-443, gnl|bosTau2|chr16 (11530341-11530700) | |
81-443, gnl|Hg17|chr1 (216559081-216558719) | |
81-443, gnl|Mm7|chr1 (184926886-184927248) | |
674-941, gnl|bosTau2|chr16 (11543168-11543435) | |
674-941, gnl|Hg17|chr1 (216549149-216548877) | |
674-941, gnl|Mm7|chr1 (184933067-184933334) | |
992-1203, gnl|bosTau2|chr16 (11545900-11546111) | |
992-1203, gnl|Hg17|chr1 (216545135-216544924) | |
992-1203, gnl|Mm7|chr1 (184936737-184936948) | |
1354-1458, gnl|bosTau2|chr16 (11548178-11548282) | |
1354-1458, gnl|canFam2|chr38 (17773649-17773776) | |
1354-1458, gnl|danRer3|chr17 (42120847-42120974) | |
1354-1458, gnl|dasNov1|scaffold_47375 (7902-8029) | |
1354-1458, gnl|echTel1|scaffold_319634 (75947-75822) | |
1354-1458, gnl|fr1|chrUn (224115258-224115135) | |
1354-1458, gnl|galGal2|chr3 (15186852-15186728) | |
1354-1458, gnl|hg17|chr1 (216542491-216542618) | |
1354-1458, gnl|Hg17|chr1 (216542595-216542491) | |
1354-1458, gnl|loxAfr1|scaffold_56401 (1448-1576) | |
1354-1458, gnl|mm7|chr1 (184939133-184939007) | |
1354-1458, gnl|Mm7|chr1 (184939027-184939131) | |
1354-1458, gnl|monDom2|scaffold_13 (26112158-26112318) | |
1354-1458, gnl|oryCun1|scaffold_131493 (857-984) | |
1354-1458, gnl|panTro1|chr1 (200267566-200267693) | |
1354-1458, gnl|rheMac2|chr1 (150406740-150406613) | |
1354-1458, gnl|rn3|chr13 (101621912-101621786) | |
1354-1458, gnl|tetNig1|chrUn_random (136417928-136418051) | |
1354-1458, gnl|xenTro1|scaffold_39 (2587267-2587394) | |
1611-1812, gnl|bosTau2|chr16 (11549964-11550165) | |
1611-1812, gnl|canFam2|chr38 (17765836-17765986) | |
1611-1812, gnl|danRer3|chr17 (42118622-42118772) | |
1611-1812, gnl|echTel1|scaffold_319634 (81179-81029) | |
1611-1812, gnl|fr1|chrUn (224115862-224115712) | |
1611-1812, gnl|galGal2|chr3 (15187947-15187797) | |
1611-1812, gnl|hg17|chr1 (216541153-216541303) | |
1611-1812, gnl|Hg17|chr1 (216541354-216541153) | |
1611-1812, gnl|loxAfr1|scaffold_2655 (46894-47043) | |
1611-1812, gnl|mm7|chr1 (184941534-184941384) | |
1611-1812, gnl|Mm7|chr1 (184941331-184941532) | |
1611-1812, gnl|monDom2|scaffold_13 (26110749-26110899) | |
1611-1812, gnl|oryCun1|scaffold_180127 (71462-71312) | |
1611-1812, gnl|panTro1|chr1 (200266225-200266375) | |
1611-1812, gnl|rheMac2|chr1 (150408080-150407930) | |
1611-1812, gnl|rn3|chr13 (101624179-101624029) | |
1611-1812, gnl|tetNig1|chrUn_random (136417405-136417555) | |
1611-1812, gnl|xenTro1|scaffold_39 (2585545-2585695) | |
1980-2146, gnl|bosTau2|chr16 (11554208-11554374) | |
1980-2146, gnl|canFam2|chr38 (17761769-17761970) | |
1980-2146, gnl|danRer3|chr17 (42118117-42118316) | |
1980-2146, gnl|dasNov1|scaffold_47375 (785-993) | |
1980-2146, gnl|echTel1|scaffold_319634 (84421-84211) | |
1980-2146, gnl|fr1|chrUn (224116400-224116219) | |
1980-2146, gnl|galGal2|chr3 (15190963-15190774) | |
1980-2146, gnl|hg17|chr1 (216534960-216535167) | |
1980-2146, gnl|Hg17|chr1 (216535140-216534974) | |
1980-2146, gnl|loxAfr1|scaffold_2655 (39450-39656) | |
1980-2146, gnl|mm7|chr1 (184945882-184945678) | |
1980-2146, gnl|Mm7|chr1 (184945701-184945867) | |
1980-2146, gnl|monDom2|scaffold_13 (26103667-26103871) | |
1980-2146, gnl|oryCun1|scaffold_180127 (75401-75195) | |
1980-2146, gnl|panTro1|chr1 (200260010-200260218) | |
1980-2146, gnl|rheMac2|chr1 (150414822-150414614) | |
1980-2146, gnl|rn3|chr13 (101628740-101628530) | |
1980-2146, gnl|tetNig1|chrUn_random (136416902-136417070) | |
1980-2146, gnl|xenTro1|scaffold_39 (2577704-2577910) | |
2287-2645, gnl|bosTau2|chr16 (11560811-11561174) | |
2287-2645, gnl|Hg17|chr1 (216530696-216530339) | |
2287-2645, gnl|Mm7|chr1 (184953572-184953927) |
Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
81-443, gnl|bosTau2|chr16 (11530341-11530700) | |
81-443, gnl|Hg17|chr1 (216559081-216558719) | |
81-443, gnl|Mm7|chr1 (184926886-184927248) | |
674-941, gnl|bosTau2|chr16 (11543168-11543435) | |
674-941, gnl|Hg17|chr1 (216549149-216548877) | |
674-941, gnl|Mm7|chr1 (184933067-184933334) | |
992-1203, gnl|bosTau2|chr16 (11545900-11546111) | |
992-1203, gnl|Hg17|chr1 (216545135-216544924) | |
992-1203, gnl|Mm7|chr1 (184936737-184936948) | |
1354-1458, gnl|bosTau2|chr16 (11548178-11548282) | |
1354-1458, gnl|canFam2|chr38 (17773649-17773776) | |
1354-1458, gnl|danRer3|chr17 (42120847-42120974) | |
1354-1458, gnl|dasNov1|scaffold_47375 (7902-8029) | |
1354-1458, gnl|echTel1|scaffold_319634 (75947-75822) | |
1354-1458, gnl|fr1|chrUn (224115258-224115135) | |
1354-1458, gnl|galGal2|chr3 (15186852-15186728) | |
1354-1458, gnl|hg17|chr1 (216542491-216542618) | |
1354-1458, gnl|Hg17|chr1 (216542595-216542491) | |
1354-1458, gnl|loxAfr1|scaffold_56401 (1448-1576) | |
1354-1458, gnl|mm7|chr1 (184939133-184939007) | |
1354-1458, gnl|Mm7|chr1 (184939027-184939131) | |
1354-1458, gnl|monDom2|scaffold_13 (26112158-26112318) | |
1354-1458, gnl|oryCun1|scaffold_131493 (857-984) | |
1354-1458, gnl|panTro1|chr1 (200267566-200267693) | |
1354-1458, gnl|rheMac2|chr1 (150406740-150406613) | |
1354-1458, gnl|rn3|chr13 (101621912-101621786) | |
1354-1458, gnl|tetNig1|chrUn_random (136417928-136418051) | |
1354-1458, gnl|xenTro1|scaffold_39 (2587267-2587394) | |
1611-1812, gnl|bosTau2|chr16 (11549964-11550165) | |
1611-1812, gnl|canFam2|chr38 (17765836-17765986) | |
1611-1812, gnl|danRer3|chr17 (42118622-42118772) | |
1611-1812, gnl|echTel1|scaffold_319634 (81179-81029) | |
1611-1812, gnl|fr1|chrUn (224115862-224115712) | |
1611-1812, gnl|galGal2|chr3 (15187947-15187797) | |
1611-1812, gnl|hg17|chr1 (216541153-216541303) | |
1611-1812, gnl|Hg17|chr1 (216541354-216541153) | |
1611-1812, gnl|loxAfr1|scaffold_2655 (46894-47043) | |
1611-1812, gnl|mm7|chr1 (184941534-184941384) | |
1611-1812, gnl|Mm7|chr1 (184941331-184941532) | |
1611-1812, gnl|monDom2|scaffold_13 (26110749-26110899) | |
1611-1812, gnl|oryCun1|scaffold_180127 (71462-71312) | |
1611-1812, gnl|panTro1|chr1 (200266225-200266375) | |
1611-1812, gnl|rheMac2|chr1 (150408080-150407930) | |
1611-1812, gnl|rn3|chr13 (101624179-101624029) | |
1611-1812, gnl|tetNig1|chrUn_random (136417405-136417555) | |
1611-1812, gnl|xenTro1|scaffold_39 (2585545-2585695) | |
1980-2146, gnl|bosTau2|chr16 (11554208-11554374) | |
1980-2146, gnl|canFam2|chr38 (17761769-17761970) | |
1980-2146, gnl|danRer3|chr17 (42118117-42118316) | |
1980-2146, gnl|dasNov1|scaffold_47375 (785-993) | |
1980-2146, gnl|echTel1|scaffold_319634 (84421-84211) | |
1980-2146, gnl|fr1|chrUn (224116400-224116219) | |
1980-2146, gnl|galGal2|chr3 (15190963-15190774) | |
1980-2146, gnl|hg17|chr1 (216534960-216535167) | |
1980-2146, gnl|Hg17|chr1 (216535140-216534974) | |
1980-2146, gnl|loxAfr1|scaffold_2655 (39450-39656) | |
1980-2146, gnl|mm7|chr1 (184945882-184945678) | |
1980-2146, gnl|Mm7|chr1 (184945701-184945867) | |
1980-2146, gnl|monDom2|scaffold_13 (26103667-26103871) | |
1980-2146, gnl|oryCun1|scaffold_180127 (75401-75195) | |
1980-2146, gnl|panTro1|chr1 (200260010-200260218) | |
1980-2146, gnl|rheMac2|chr1 (150414822-150414614) | |
1980-2146, gnl|rn3|chr13 (101628740-101628530) | |
1980-2146, gnl|tetNig1|chrUn_random (136416902-136417070) | |
1980-2146, gnl|xenTro1|scaffold_39 (2577704-2577910) | |
2287-2645, gnl|bosTau2|chr16 (11560811-11561174) | |
2287-2645, gnl|Hg17|chr1 (216530696-216530339) | |
2287-2645, gnl|Mm7|chr1 (184953572-184953927) |
Expressed library(ies): 15 entry(ies) | More info |
Expressed library(ies): 15 entry(ies) | Help | Less info |
ecc (0.46014) | |
cty (0.41632) | |
hea (0.408998) | |
fhi (0.339155) | |
pan (0.23596) | |
med (0.232504) | |
mas (0.210305) | |
sag (0.182715) | |
nje (0.16592) | |
csp (0.161186) | |
hyp (0.142837) | |
ova (0.129132) | |
ese (0.126502) | |
eru (0.120048) | |
jej (0.0989218) |
Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
ecc (0.46014) | |
cty (0.41632) | |
hea (0.408998) | |
fhi (0.339155) | |
pan (0.23596) | |
med (0.232504) | |
mas (0.210305) | |
sag (0.182715) | |
nje (0.16592) | |
csp (0.161186) | |
hyp (0.142837) | |
ova (0.129132) | |
ese (0.126502) | |
eru (0.120048) | |
jej (0.0989218) |