Non-Coding RNA Search

Ss1.1-Pig4-TMW8022C01.3

Sequence:


               
               GACGGCGTGCTCTCGGCTCTACTAACTCGCTCCTTGCTTTGTGTCTCCTTAATATGGCAA
AGCAGATCCTTAACCTTCCGAATGCAGCGTCTTTAAGCGTTTTTCATTTTCCGACCAGCA
GACTATCTTGGAACTTCCTCTCACGCCCCTGCCTTCCTCACACACTCTTTTTGGAGGGGT
CAGTGTCCCTGCTCTCTGCCTCCTGTGTAAACTGAAACCTGTCCACTCTAAGCTTTCTGC
TCATCGCTTGGTTGTGCTCTTTTATGCCTTAAATTAATCTTGGCAGTGTTTTTGACTCAT
CTGCTGAAAAAAAAATCCCTCAAGAAATTTCCACCAGCAACTCAAAGCAAACAAAGCTGA
CCAAATAGGGGGAAGGAATCTCTCCAGTGGAAATATTTGTCCCCCTGCCCCCCAAGTTTC
ACTGTGGAAGAGAGAGACTGCTTTAGGGCCTCTGGATGTTGGGCTCTGCCGGCGGCTGGG
AGCGGAGGCGCAGGCAGGCTGGATTCGGAGCGTCCGCGTTCTGGCCAGCAGGGGGCGCAG
TGCGGGCTGCGGGTGCTGTGGGGCATCGCCTGGCACTGTGGTGTTCTCAGCAGAAGGGTT
GCTGTGGTCGGTTTTTACCCCATCCTGTGGCTTCCTCACTCTCCTGCCCGGCAGATGATC
TGACCCATAACACCTTCCTAAAGGCATGTGTGAGGGGATAGAACTGTTCTAATGAGTGTA
TGTTTGATCGATTTATAAATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGGCGTGCTCTCGGCTCTACTAACTCGCTCCTTGCTTTGTGTCTCCTTAATATGGCAA
AGCAGATCCTTAACCTTCCGAATGCAGCGTCTTTAAGCGTTTTTCATTTTCCGACCAGCA
GACTATCTTGGAACTTCCTCTCACGCCCCTGCCTTCCTCACACACTCTTTTTGGAGGGGT
CAGTGTCCCTGCTCTCTGCCTCCTGTGTAAACTGAAACCTGTCCACTCTAAGCTTTCTGC
TCATCGCTTGGTTGTGCTCTTTTATGCCTTAAATTAATCTTGGCAGTGTTTTTGACTCAT
CTGCTGAAAAAAAAATCCCTCAAGAAATTTCCACCAGCAACTCAAAGCAAACAAAGCTGA
CCAAATAGGGGGAAGGAATCTCTCCAGTGGAAATATTTGTCCCCCTGCCCCCCAAGTTTC
ACTGTGGAAGAGAGAGACTGCTTTAGGGCCTCTGGATGTTGGGCTCTGCCGGCGGCTGGG
AGCGGAGGCGCAGGCAGGCTGGATTCGGAGCGTCCGCGTTCTGGCCAGCAGGGGGCGCAG
TGCGGGCTGCGGGTGCTGTGGGGCATCGCCTGGCACTGTGGTGTTCTCAGCAGAAGGGTT
GCTGTGGTCGGTTTTTACCCCATCCTGTGGCTTCCTCACTCTCCTGCCCGGCAGATGATC
TGACCCATAACACCTTCCTAAAGGCATGTGTGAGGGGATAGAACTGTTCTAATGAGTGTA
TGTTTGATCGATTTATAAATTTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-744, gnl|bosTau2|chr20 (34794986-34795775)
               

               
               1-744, gnl|Hg17|chr5 (14541523-14542233)
               

               
               1-744, gnl|Mm7|chr15 (27850794-27850042)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr20 (34794986-34795775)
               

               
               1-744, gnl|Hg17|chr5 (14541523-14542233)
               

               
               1-744, gnl|Mm7|chr15 (27850794-27850042)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               che (0.136314)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               che (0.136314)
               

               
               ecc (0.115035)

	1-744, gnl\|bosTau2\|chr20 (34794986-34795775)
	1-744, gnl\|Hg17\|chr5 (14541523-14542233)
	1-744, gnl\|Mm7\|chr15 (27850794-27850042)