Non-Coding RNA Search

Ss1.1-Pig4-TMW8022C09.5

Sequence:


               
               CCCATGGAGGGTTCCAGTTTCCCTGTCCCCTGGCTTCACTTCTCAGCCGTCTGGGCTCAC
TTTCTTCAGGAAGGCGGTGCCCACTGGCACTGCCCTCCTCCTGGCAGCTTCACGGATGCT
GTTTCTGCACCAAGGACCAGGGGTTTCCACCACCCCACGGGTCCTTCAGGACTGAACGGA
AACACAAGGACTCAGTGAAGAGTTTGTTCCTTTGGATCTTCCCCCCAGGCGAGTGCCGGG
GCTGCCATGGATGCTCAGAGGAAAGGACGGGGACCATACGATCTGCTTGGAGACCCTACC
CTTTTTCTTTCCTTCCCCAAGGATGTTTTTAGGGTACTCCGGTCCCCACGCAGTCCTCTC
CTTTCCATCTGGGGGGAAAGCTGCTTCTTCCCCCCACCCCCAGGTTAGGGCCTCTCTCCT
AGAGGGCAGCCCTTGTGTACGTCGTGGCCAGAACGAGGCCAGATCCTGGGCAGGAGGCCA
CAGCTGGAGGAAAAGGGCTCCAGGCCTAGTTTCCAACATCCTTGGAAAACCCCAGCCCTG
CCTGGATGTTCACAGAGTGGTGAGAAATTCAGGTACGACAACATGAGGACACAAGTGTTT
GTCCGGCCTGCACACTTCCCAGAGACCCATCCCAGCCGAGGCTCCTGGCCTCCGGTTCCC
CACGACAGCACGGGCTCTCCTGCGCTGTGGTGCAGGTCCCCGCAGCCTGGCCTTCTGGGT
TCTCAGCATTTGGGAGCCTGCCCTCCACTTCAGTGCTGGTGGGGAGGGCAGGCCTGGATT
AAAGCTTGTAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCATGGAGGGTTCCAGTTTCCCTGTCCCCTGGCTTCACTTCTCAGCCGTCTGGGCTCAC
TTTCTTCAGGAAGGCGGTGCCCACTGGCACTGCCCTCCTCCTGGCAGCTTCACGGATGCT
GTTTCTGCACCAAGGACCAGGGGTTTCCACCACCCCACGGGTCCTTCAGGACTGAACGGA
AACACAAGGACTCAGTGAAGAGTTTGTTCCTTTGGATCTTCCCCCCAGGCGAGTGCCGGG
GCTGCCATGGATGCTCAGAGGAAAGGACGGGGACCATACGATCTGCTTGGAGACCCTACC
CTTTTTCTTTCCTTCCCCAAGGATGTTTTTAGGGTACTCCGGTCCCCACGCAGTCCTCTC
CTTTCCATCTGGGGGGAAAGCTGCTTCTTCCCCCCACCCCCAGGTTAGGGCCTCTCTCCT
AGAGGGCAGCCCTTGTGTACGTCGTGGCCAGAACGAGGCCAGATCCTGGGCAGGAGGCCA
CAGCTGGAGGAAAAGGGCTCCAGGCCTAGTTTCCAACATCCTTGGAAAACCCCAGCCCTG
CCTGGATGTTCACAGAGTGGTGAGAAATTCAGGTACGACAACATGAGGACACAAGTGTTT
GTCCGGCCTGCACACTTCCCAGAGACCCATCCCAGCCGAGGCTCCTGGCCTCCGGTTCCC
CACGACAGCACGGGCTCTCCTGCGCTGTGGTGCAGGTCCCCGCAGCCTGGCCTTCTGGGT
TCTCAGCATTTGGGAGCCTGCCCTCCACTTCAGTGCTGGTGGGGAGGGCAGGCCTGGATT
AAAGCTTGTAGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               117-221, - strand, RNAz p=0.536254
               

               
               299-488, - strand, RNAz p=0.963757
               

               
               598-767, + strand, RNAz p=0.999869

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-221, - strand, RNAz p=0.536254
               

               
               299-488, - strand, RNAz p=0.963757
               

               
               598-767, + strand, RNAz p=0.999869

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               96-304, - strand, RNAmicro p=0.995054

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               96-304, - strand, RNAmicro p=0.995054

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_052846, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_052846, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-767, gnl|bosTau2|chr13 (51565186-51564444)
               

               
               1-767, gnl|Hg17|chr20 (39422837-39422058)
               

               
               1-767, gnl|Mm7|chr2 (160648065-160647371)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-767, gnl|bosTau2|chr13 (51565186-51564444)
               

               
               1-767, gnl|Hg17|chr20 (39422837-39422058)
               

               
               1-767, gnl|Mm7|chr2 (160648065-160647371)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cly (0.120642)

	117-221, - strand, RNAz p=0.536254
	299-488, - strand, RNAz p=0.963757
	598-767, + strand, RNAz p=0.999869

	1-767, gnl\|bosTau2\|chr13 (51565186-51564444)
	1-767, gnl\|Hg17\|chr20 (39422837-39422058)
	1-767, gnl\|Mm7\|chr2 (160648065-160647371)