Non-Coding RNA Search

Ss1.1-Pig4-TMW8022C13.3

Sequence:


               
               TGCCAATGTACCAACAGAAGGGTTCCAGTTTTAGAAAGATGTTGTGGAAGTTAGGTACAA
TGCAGCACTGAGATATATATATATATATATACATATATATATATACATATATATAAAAAG
GTTTGATCCATCAAGCTTGGCTCATGGGATCTGCTGCTGCATTAAATCGGGAAAGAAAAT
GTGAAGATTTCATTGGGAATCACAGAAAATGCCCAAATGAAGTCAAGATGGCGAGTGGGT
GCGAGTGAGAATGAGTGGCAAAATGTAACGAAAACTTTACACGAATGCTTATTTAGGTTG
TTCAAAGTCAAAAGGGCTACAGGTCACAGATCTTCAGTGCCTGAGAAGGAAATTGACTTA
CTCTATATCAATTGAGGGGAAAGTGCAGTACTGTCATCTTCAAGCCTTGTAAGCATAAAA
GAGAATAGGATGCCCATATAAGTCAAAGGAAAATGAGCCCAGGCCTTGCTATGAAGCAGT
GTGTGAATGGACAATGTTGAATGAATGTCTGGCTCAGTGATACAGAGCCAGGTTCATCTT
TCAAATCTAGGGCTCTTCATTCATGAAGCAGACTCCTAGTCCTGGAGTGACTGTGTACGA
GAGTGTGGTTGTGGTGCTGTATGTGAACGCATGCAAGCTTGATTCGCCTTCAGGGGGCTG
ATAACAAACCTAGTAAATCATCAAAGTGAGATCATAATAAGTGTTACTGTACACTGGACA
TGAAAACAAAGACCAGTTCAGCAGCAGACATTGGTGTACTCTGCAGCCTGTGTTTTCTAT
TTCCCTTCCCTTTTCCCACCCCCCTCCTTTTTTTTTTTTTGTTTTGTTTTGTTTTTTGTT
TTTTTGTTTTGTTTTAGTTTTTGTTTTGTTTTTTGGGTTTTTGTTTTTTGTTTTTAGTTT
TTATTTACATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCAATGTACCAACAGAAGGGTTCCAGTTTTAGAAAGATGTTGTGGAAGTTAGGTACAA
TGCAGCACTGAGATATATATATATATATATACATATATATATATACATATATATAAAAAG
GTTTGATCCATCAAGCTTGGCTCATGGGATCTGCTGCTGCATTAAATCGGGAAAGAAAAT
GTGAAGATTTCATTGGGAATCACAGAAAATGCCCAAATGAAGTCAAGATGGCGAGTGGGT
GCGAGTGAGAATGAGTGGCAAAATGTAACGAAAACTTTACACGAATGCTTATTTAGGTTG
TTCAAAGTCAAAAGGGCTACAGGTCACAGATCTTCAGTGCCTGAGAAGGAAATTGACTTA
CTCTATATCAATTGAGGGGAAAGTGCAGTACTGTCATCTTCAAGCCTTGTAAGCATAAAA
GAGAATAGGATGCCCATATAAGTCAAAGGAAAATGAGCCCAGGCCTTGCTATGAAGCAGT
GTGTGAATGGACAATGTTGAATGAATGTCTGGCTCAGTGATACAGAGCCAGGTTCATCTT
TCAAATCTAGGGCTCTTCATTCATGAAGCAGACTCCTAGTCCTGGAGTGACTGTGTACGA
GAGTGTGGTTGTGGTGCTGTATGTGAACGCATGCAAGCTTGATTCGCCTTCAGGGGGCTG
ATAACAAACCTAGTAAATCATCAAAGTGAGATCATAATAAGTGTTACTGTACACTGGACA
TGAAAACAAAGACCAGTTCAGCAGCAGACATTGGTGTACTCTGCAGCCTGTGTTTTCTAT
TTCCCTTCCCTTTTCCCACCCCCCTCCTTTTTTTTTTTTTGTTTTGTTTTGTTTTTTGTT
TTTTTGTTTTGTTTTAGTTTTTGTTTTGTTTTTTGGGTTTTTGTTTTTTGTTTTTAGTTT
TTATTTACATTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96IJ5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96IJ5_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-270, - strand, RNAz p=0.997217
               

               
               430-589, + strand, RNAz p=0.967813

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-270, - strand, RNAz p=0.997217
               

               
               430-589, + strand, RNAz p=0.967813

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               517-583, + strand, RNAmicro p=0.997828

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               517-583, + strand, RNAmicro p=0.997828

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               116-72, BP243352 Sugano cDNA library, liver HepG2 Homo sapiens cDNA clone 
(dbj|BP243352.1|), blast E-value=4e-31, identity=100% 
               

               
               116-72, DA375373 BRTHA2 Homo sapiens cDNA clone BRTHA2006626 5', mRNA 
(dbj|DA375373.1|), blast E-value=4e-31, identity=100% 
               

               
               116-268, DA465553 D3OST2 Homo sapiens cDNA clone D3OST2003487 5', mRNA 
(dbj|DA465553.1|), blast E-value=0, identity=98.69% 
               

               
               116-70, 965035 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK777888.1|), 
blast E-value=6e-24, identity=98.44% 
               

               
               116-70, 1234623 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN284867.1|), 
blast E-value=1e-27, identity=98.57% 
               

               
               116-70, 1240239 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN286157.1|), 
blast E-value=1e-27, identity=98.57%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               116-72, BP243352 Sugano cDNA library, liver HepG2 Homo sapiens cDNA clone 
(dbj|BP243352.1|), blast E-value=4e-31, identity=100% 
               

               
               116-72, DA375373 BRTHA2 Homo sapiens cDNA clone BRTHA2006626 5', mRNA 
(dbj|DA375373.1|), blast E-value=4e-31, identity=100% 
               

               
               116-268, DA465553 D3OST2 Homo sapiens cDNA clone D3OST2003487 5', mRNA 
(dbj|DA465553.1|), blast E-value=0, identity=98.69% 
               

               
               116-70, 965035 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK777888.1|), 
blast E-value=6e-24, identity=98.44% 
               

               
               116-70, 1234623 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN284867.1|), 
blast E-value=1e-27, identity=98.57% 
               

               
               116-70, 1240239 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN286157.1|), 
blast E-value=1e-27, identity=98.57%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-886, gnl|bosTau2|chr1 (70970559-70969696)
               

               
               1-886, gnl|Hg17|chr3 (161702627-161701759)
               

               
               1-886, gnl|Mm7|chr3 (69175128-69174319)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-886, gnl|bosTau2|chr1 (70970559-70969696)
               

               
               1-886, gnl|Hg17|chr3 (161702627-161701759)
               

               
               1-886, gnl|Mm7|chr3 (69175128-69174319)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               lun (0.150489)
               

               
               ski (0.146735)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               lun (0.150489)
               

               
               ski (0.146735)

	1-270, - strand, RNAz p=0.997217
	430-589, + strand, RNAz p=0.967813

	116-72, BP243352 Sugano cDNA library, liver HepG2 Homo sapiens cDNA clone (dbj\|BP243352.1\|), blast E-value=4e-31, identity=100%
	116-72, DA375373 BRTHA2 Homo sapiens cDNA clone BRTHA2006626 5', mRNA (dbj\|DA375373.1\|), blast E-value=4e-31, identity=100%
	116-268, DA465553 D3OST2 Homo sapiens cDNA clone D3OST2003487 5', mRNA (dbj\|DA465553.1\|), blast E-value=0, identity=98.69%
	116-70, 965035 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK777888.1\|), blast E-value=6e-24, identity=98.44%
	116-70, 1234623 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN284867.1\|), blast E-value=1e-27, identity=98.57%
	116-70, 1240239 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN286157.1\|), blast E-value=1e-27, identity=98.57%

	1-886, gnl\|bosTau2\|chr1 (70970559-70969696)
	1-886, gnl\|Hg17\|chr3 (161702627-161701759)
	1-886, gnl\|Mm7\|chr3 (69175128-69174319)