Non-Coding RNA Search

Ss1.1-Pig4-TMW8022C15.3

Sequence:


               
               TCATCATGGTTCTGTGGCGACCATAGTGACTTGTCAGTCGGTTTGCCTTTTCACCATTGT
CTGAGGAAGAGGAGGAGGATGAACAAAAAGAACCAATGCTGAAAGAAAGCTTTGAAGGAA
TGAAAATGAGAAGTACCAAACAAGAACCAAATGGAAATAGTAAAGTAAACAAAGCACAGG
AAGATGATTTAAAGTGGGTAGAAGAGAATGTTCCTTCATCTGTGACAGATGTAGCACTTC
CAGCCCTTCTGGATTCAGATGAGGAACGAATGATCACGCACTTCGAAAGGTCCAAAATGG
AGTAGGAATGGGAAGATTCGCAGTTGAAGATGGCTAGTGACTGGGAAGAGATCAGCTTCT
GTGTCAGTCTCTGCACTGCTCCGTGGGATTAAAGGAGGCAATGACATCCTGATCTGTTCC
TTGATCTTTGTGCATTGGAGCTGGCGAAAGGTCTTGCAACAAGGAGAGCATTCTATTGAA
AACAAGTTCATAGGATGAGAAAAACTTTCAAGTTTTTTATTTGCAGCATTGATGCCCCTT
TCTCTTCCTTACCCTGACGTGGATGTTTATGCAACTTTTATATATGTTGTTCCTGAACCT
CCTATAATGTTTAAATTGTTTAATCTGTCACACTAAAAAGTTTAACATCTCCTAAAGAAC
TACGACATCAATGCCATAATATGTAATATCCAGGAGCAACTGCCTGTAATTTTTATTTAT
TTAGGGAGTTAAATAGGTGATGGGGAAAATTGTTAATTATTTTTGCATTTCCTGGGAAGC
CAAGGTTAAATCTTGCAGGCGTAGTTTTGAGAAAAAAAAAGAATCCTTTTGTGTTAAGGA
GCCACGGTTCTATCAATGATTAAAAGAACAAAAAAAAAAAAAAAAAGAGAGAGACTGTTA
CAGTATAATTAAGATCATTTGAAAAGCGAAATCAAGTGCAATTTTGTTTACAAATGGTGT
ATATTGAAGATTTTTCTATTTCAGATGTACTTTAGAGAGAAATATTAGCTTAACTCTTTT
GACATCTGCTATTGTGACACATCCCATTGCTGGCAATGTGGTGCACACTCCAGAACTTTT
AACTACTGTTTTGTAAGCCTCCAAGGACGGCATTGCGGGAGTTCTAGGCAGTGCTTTGTT
TGCTTTCATGCCTTTCACTGGGTGTTGCACTAGATGCAGAGAGGCAGTCCATCTTAAGTG
CATGTGAGTGAGCACCCTGCTAAAGGGATTACAGTGCTTCAGAAGCGGGAGCTAATATAA
AAGAAACAGGTCCTTCTGGCTTAAACAATTTTTTCTGCATGAAATAGTGTGGAGGCCCTG
GACTGCTGCTCATTGTTTAGGATCAACTGTTCTTGTATTGGTGTTGGTTCAGCGGTTGTT
TATAAGAAACATCACAAGGTGATGGGATTCATTTGAAGCACTATATTTGTTTGAATGGTT
TTGTCCAGTTTTGCCTTCCCAAGATTTTTGTTCTGCATAGAAAGTTCATACCACTTTTTA
ATATTAAAAAAATTTTAACAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATCATGGTTCTGTGGCGACCATAGTGACTTGTCAGTCGGTTTGCCTTTTCACCATTGT
CTGAGGAAGAGGAGGAGGATGAACAAAAAGAACCAATGCTGAAAGAAAGCTTTGAAGGAA
TGAAAATGAGAAGTACCAAACAAGAACCAAATGGAAATAGTAAAGTAAACAAAGCACAGG
AAGATGATTTAAAGTGGGTAGAAGAGAATGTTCCTTCATCTGTGACAGATGTAGCACTTC
CAGCCCTTCTGGATTCAGATGAGGAACGAATGATCACGCACTTCGAAAGGTCCAAAATGG
AGTAGGAATGGGAAGATTCGCAGTTGAAGATGGCTAGTGACTGGGAAGAGATCAGCTTCT
GTGTCAGTCTCTGCACTGCTCCGTGGGATTAAAGGAGGCAATGACATCCTGATCTGTTCC
TTGATCTTTGTGCATTGGAGCTGGCGAAAGGTCTTGCAACAAGGAGAGCATTCTATTGAA
AACAAGTTCATAGGATGAGAAAAACTTTCAAGTTTTTTATTTGCAGCATTGATGCCCCTT
TCTCTTCCTTACCCTGACGTGGATGTTTATGCAACTTTTATATATGTTGTTCCTGAACCT
CCTATAATGTTTAAATTGTTTAATCTGTCACACTAAAAAGTTTAACATCTCCTAAAGAAC
TACGACATCAATGCCATAATATGTAATATCCAGGAGCAACTGCCTGTAATTTTTATTTAT
TTAGGGAGTTAAATAGGTGATGGGGAAAATTGTTAATTATTTTTGCATTTCCTGGGAAGC
CAAGGTTAAATCTTGCAGGCGTAGTTTTGAGAAAAAAAAAGAATCCTTTTGTGTTAAGGA
GCCACGGTTCTATCAATGATTAAAAGAACAAAAAAAAAAAAAAAAAGAGAGAGACTGTTA
CAGTATAATTAAGATCATTTGAAAAGCGAAATCAAGTGCAATTTTGTTTACAAATGGTGT
ATATTGAAGATTTTTCTATTTCAGATGTACTTTAGAGAGAAATATTAGCTTAACTCTTTT
GACATCTGCTATTGTGACACATCCCATTGCTGGCAATGTGGTGCACACTCCAGAACTTTT
AACTACTGTTTTGTAAGCCTCCAAGGACGGCATTGCGGGAGTTCTAGGCAGTGCTTTGTT
TGCTTTCATGCCTTTCACTGGGTGTTGCACTAGATGCAGAGAGGCAGTCCATCTTAAGTG
CATGTGAGTGAGCACCCTGCTAAAGGGATTACAGTGCTTCAGAAGCGGGAGCTAATATAA
AAGAAACAGGTCCTTCTGGCTTAAACAATTTTTTCTGCATGAAATAGTGTGGAGGCCCTG
GACTGCTGCTCATTGTTTAGGATCAACTGTTCTTGTATTGGTGTTGGTTCAGCGGTTGTT
TATAAGAAACATCACAAGGTGATGGGATTCATTTGAAGCACTATATTTGTTTGAATGGTT
TTGTCCAGTTTTGCCTTCCCAAGATTTTTGTTCTGCATAGAAAGTTCATACCACTTTTTA
ATATTAAAAAAATTTTAACAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7512745|pir||T08676

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7512745|pir||T08676

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               969-1088, - strand, RNAz p=0.865081

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               969-1088, - strand, RNAz p=0.865081

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               262-1523, gnl|bosTau2|chr10 (17070070-17068802)
               

               
               262-1523, gnl|Hg17|chr15 (40291241-40290022)
               

               
               262-1523, gnl|Mm7|chr2 (120097389-120096161)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               262-1523, gnl|bosTau2|chr10 (17070070-17068802)
               

               
               262-1523, gnl|Hg17|chr15 (40291241-40290022)
               

               
               262-1523, gnl|Mm7|chr2 (120097389-120096161)

Expressed library(ies): 44 entry(ies)

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Expressed library(ies): 44 entry(ies)

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               pro (1.5361)
               

               
               tra (0.984737)
               

               
               sug (0.763747)
               

               
               lyg (0.532411)
               

               
               thg (0.507164)
               

               
               tbr (0.462535)
               

               
               mgp (0.461361)
               

               
               tes (0.415628)
               

               
               ste (0.405625)
               

               
               pla (0.401016)
               

               
               kid (0.389206)
               

               
               cmu (0.372787)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               hyp (0.285673)
               

               
               cst (0.280073)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 44 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.5361)
               

               
               tra (0.984737)
               

               
               sug (0.763747)
               

               
               lyg (0.532411)
               

               
               thg (0.507164)
               

               
               tbr (0.462535)
               

               
               mgp (0.461361)
               

               
               tes (0.415628)
               

               
               ste (0.405625)
               

               
               pla (0.401016)
               

               
               kid (0.389206)
               

               
               cmu (0.372787)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               hyp (0.285673)
               

               
               cst (0.280073)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	262-1523, gnl\|bosTau2\|chr10 (17070070-17068802)
	262-1523, gnl\|Hg17\|chr15 (40291241-40290022)
	262-1523, gnl\|Mm7\|chr2 (120097389-120096161)

	pro (1.5361)
	tra (0.984737)
	sug (0.763747)
	lyg (0.532411)
	thg (0.507164)
	tbr (0.462535)
	mgp (0.461361)
	tes (0.415628)
	ste (0.405625)
	pla (0.401016)
	kid (0.389206)
	cmu (0.372787)
	mgm (0.360685)
	gul (0.355177)
	rec (0.346141)
	eye (0.341006)
	vin (0.332557)
	mga (0.32041)
	ski (0.29347)
	cte (0.29274)
	lin (0.291206)
	hyp (0.285673)
	cst (0.280073)
	pgl (0.236967)
	pan (0.23596)
	spc (0.226732)
	aor (0.195274)
	sag (0.182715)
	sto (0.179824)
	sin (0.174948)
	duo (0.172801)
	fco (0.157208)
	bfe (0.149858)
	liv (0.146284)
	csk (0.140746)
	che (0.136314)
	ova (0.129132)
	ret (0.128733)
	bla (0.124347)
	eru (0.120048)
	clu (0.119646)
	med (0.116252)
	nbm (0.0993246)
	eje (0.0988338)