Ss1.1-Pig4-TMW8022C18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGATTTCTATATCACTGGGGACCGGGGCTATATGGATGAGGATGGATATTTCTGGTTTG TTGCAAGATCAGATGATATCATATTATCCTCTGGTTACCGAATTGGACCATCTGAGGTAG AAAATGCCCTGATTGAACATCCTGCAGTTGAAGAGTCAGCTGTCATCAGCAGCCCAGACC CTGTCAGAGGAGAGGTAGTAAAGGCTTTTATTGTTCTGAACCCTGATTACAAGTCACATG ATCAAGAACAACTGAAAAAGGAGATTCAGGAACATGTGAAAAGAACTACAGCACCTTACA AATATCCCAGAAAGATAGAATTTATTCAAGAGCTGCCAAAGACTATCAGTGGGAAGATAA AAAGAAATGAACTGAGGAAGAAGGAATGGAAAAAAATTTAAATTTATTCCATTAATTATC ACGGTATCTATAAAATAAGACCTTGTAAAAACCATAGCATTATGAAGAAGTGGTAAAAAA TGTGATAGTATGTTTACAAACTAATTGATTTAAAATATCTTGTGGTTATAACATCAGAGG CTGAATTCTGAAATAAAATATTCAGTAAATTCCTCTGCATTAGTGTCAGTAAAAAGAACA CCATCAATTGCTTAGGGAAGTTTTAAATGTATAGTATAGACGCAGTTTCTAAACCAAATC TCTGACCTGTCAGATCTCAAATCTTAGTTGAATAATTTTTTTGATATGGTGATATATAAA TTAAAACCAATTTTCAAGTGTTGAAATAAACTAAACAAATTATAAACATTTTTGGAGAAA TTTAAAATATGAAATCACCATAATGCTTAAAATACAAATAGCTATCTGAAAATAGGCCAG GGATTTTTATTAGTCACACTTTTATTCAAATGATTTAAAAATAGTTTAAAATTCGTTTCA AGGTCTAACTGTAAAGGAAGGATATCACATGTTGTACACCCGAAACTAATATAATATTGT ACATAAATTATAATTTCAACAGAAAGAAACAAGGATATCTTATATTAGTAATTTTGCTTA CTATGTTTAACCTAATAAATAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGATTTCTATATCACTGGGGACCGGGGCTATATGGATGAGGATGGATATTTCTGGTTTG TTGCAAGATCAGATGATATCATATTATCCTCTGGTTACCGAATTGGACCATCTGAGGTAG AAAATGCCCTGATTGAACATCCTGCAGTTGAAGAGTCAGCTGTCATCAGCAGCCCAGACC CTGTCAGAGGAGAGGTAGTAAAGGCTTTTATTGTTCTGAACCCTGATTACAAGTCACATG ATCAAGAACAACTGAAAAAGGAGATTCAGGAACATGTGAAAAGAACTACAGCACCTTACA AATATCCCAGAAAGATAGAATTTATTCAAGAGCTGCCAAAGACTATCAGTGGGAAGATAA AAAGAAATGAACTGAGGAAGAAGGAATGGAAAAAAATTTAAATTTATTCCATTAATTATC ACGGTATCTATAAAATAAGACCTTGTAAAAACCATAGCATTATGAAGAAGTGGTAAAAAA TGTGATAGTATGTTTACAAACTAATTGATTTAAAATATCTTGTGGTTATAACATCAGAGG CTGAATTCTGAAATAAAATATTCAGTAAATTCCTCTGCATTAGTGTCAGTAAAAAGAACA CCATCAATTGCTTAGGGAAGTTTTAAATGTATAGTATAGACGCAGTTTCTAAACCAAATC TCTGACCTGTCAGATCTCAAATCTTAGTTGAATAATTTTTTTGATATGGTGATATATAAA TTAAAACCAATTTTCAAGTGTTGAAATAAACTAAACAAATTATAAACATTTTTGGAGAAA TTTAAAATATGAAATCACCATAATGCTTAAAATACAAATAGCTATCTGAAAATAGGCCAG GGATTTTTATTAGTCACACTTTTATTCAAATGATTTAAAAATAGTTTAAAATTCGTTTCA AGGTCTAACTGTAAAGGAAGGATATCACATGTTGTACACCCGAAACTAATATAATATTGT ACATAAATTATAATTTCAACAGAAAGAAACAAGGATATCTTATATTAGTAATTTTGCTTA CTATGTTTAACCTAATAAATAGTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 90-200, gnl|bosTau2|chr25 (18388191-18388301) | |
| 90-200, gnl|canFam2|chr6 (27648087-27647969) | |
| 90-200, gnl|canFam2|chr6 (27648092-27647977) | |
| 90-200, gnl|danRer3|chr2 (40339296-40339407) | |
| 90-200, gnl|danRer3|chr2 (40339296-40339405) | |
| 90-200, gnl|dasNov1|scaffold_65641 (4675-4565) | |
| 90-200, gnl|dasNov1|scaffold_65641 (4680-4565) | |
| 90-200, gnl|echTel1|scaffold_318426 (55722-55609) | |
| 90-200, gnl|echTel1|scaffold_318426 (55730-55616) | |
| 90-200, gnl|galGal2|chrUn (38999336-38999225) | |
| 90-200, gnl|galGal2|chrUn (38984101-38983987) | |
| 90-200, gnl|hg17|chr12 (7368351-7368465) | |
| 90-200, gnl|hg17|chr16 (20648271-20648387) | |
| 90-200, gnl|Hg17|chr16 (20648272-20648381) | |
| 90-200, gnl|loxAfr1|scaffold_11310 (10332-10214) | |
| 90-200, gnl|loxAfr1|scaffold_11310 (10336-10222) | |
| 90-200, gnl|mm7|chr7 (115633598-115633715) | |
| 90-200, gnl|mm7|chr7 (115633593-115633707) | |
| 90-200, gnl|Mm7|chr7 (115633599-115633709) | |
| 90-200, gnl|monDom2|scaffold_19 (41067309-41067422) | |
| 90-200, gnl|monDom2|scaffold_19 (41067309-41067418) | |
| 90-200, gnl|oryCun1|scaffold_214384 (44587-44704) | |
| 90-200, gnl|oryCun1|scaffold_214384 (44582-44696) | |
| 90-200, gnl|panTro1|chr10 (7932287-7932401) | |
| 90-200, gnl|panTro1|chr18 (21069289-21069405) | |
| 90-200, gnl|rheMac2|chr11 (7595940-7596054) | |
| 90-200, gnl|rheMac2|chr20 (19588301-19588417) | |
| 90-200, gnl|rn3|chr1 (178132157-178132274) | |
| 90-200, gnl|rn3|chr1 (178132152-178132266) | |
| 90-200, gnl|xenTro1|scaffold_6 (3594582-3594468) | |
| 94-197, gnl|bosTau2|chr25 (18479734-18479837) | |
| 94-197, gnl|canFam2|chr6 (27589332-27589200) | |
| 94-197, gnl|danRer3|chr2 (40339294-40339411) | |
| 94-197, gnl|dasNov1|scaffold_5189 (84736-84854) | |
| 94-197, gnl|echTel1|scaffold_318426 (55731-55610) | |
| 94-197, gnl|galGal2|chrUn (39379515-39379650) | |
| 94-197, gnl|hg17|chr16 (20711051-20711168) | |
| 94-197, gnl|Hg17|chr16 (20711058-20711166) | |
| 94-197, gnl|loxAfr1|scaffold_2361 (50591-50470) | |
| 94-197, gnl|mm7|chr7 (115703243-115703357) | |
| 94-197, gnl|Mm7|chr7 (115703250-115703353) | |
| 94-197, gnl|monDom2|scaffold_19 (41121080-41121201) | |
| 94-197, gnl|oryCun1|scaffold_214384 (110405-110521) | |
| 94-197, gnl|panTro1|chr18 (21132369-21132486) | |
| 94-197, gnl|rheMac2|chr20 (19663809-19663926) | |
| 94-197, gnl|rn3|chr1 (178214310-178214427) | |
| 94-197, gnl|xenTro1|scaffold_6 (3594573-3594467) | |
| 313-588, gnl|bosTau2|chr25 (18482878-18483151) | |
| 313-588, gnl|Hg17|chr16 (20715707-20715991) | |
| 313-588, gnl|Mm7|chr7 (115706555-115706820) | |
| 590-1041, gnl|bosTau2|chr25 (18483174-18483615) | |
| 590-1041, gnl|Hg17|chr16 (20716014-20716390) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 90-200, gnl|bosTau2|chr25 (18388191-18388301) | |
| 90-200, gnl|canFam2|chr6 (27648087-27647969) | |
| 90-200, gnl|canFam2|chr6 (27648092-27647977) | |
| 90-200, gnl|danRer3|chr2 (40339296-40339407) | |
| 90-200, gnl|danRer3|chr2 (40339296-40339405) | |
| 90-200, gnl|dasNov1|scaffold_65641 (4675-4565) | |
| 90-200, gnl|dasNov1|scaffold_65641 (4680-4565) | |
| 90-200, gnl|echTel1|scaffold_318426 (55722-55609) | |
| 90-200, gnl|echTel1|scaffold_318426 (55730-55616) | |
| 90-200, gnl|galGal2|chrUn (38999336-38999225) | |
| 90-200, gnl|galGal2|chrUn (38984101-38983987) | |
| 90-200, gnl|hg17|chr12 (7368351-7368465) | |
| 90-200, gnl|hg17|chr16 (20648271-20648387) | |
| 90-200, gnl|Hg17|chr16 (20648272-20648381) | |
| 90-200, gnl|loxAfr1|scaffold_11310 (10332-10214) | |
| 90-200, gnl|loxAfr1|scaffold_11310 (10336-10222) | |
| 90-200, gnl|mm7|chr7 (115633598-115633715) | |
| 90-200, gnl|mm7|chr7 (115633593-115633707) | |
| 90-200, gnl|Mm7|chr7 (115633599-115633709) | |
| 90-200, gnl|monDom2|scaffold_19 (41067309-41067422) | |
| 90-200, gnl|monDom2|scaffold_19 (41067309-41067418) | |
| 90-200, gnl|oryCun1|scaffold_214384 (44587-44704) | |
| 90-200, gnl|oryCun1|scaffold_214384 (44582-44696) | |
| 90-200, gnl|panTro1|chr10 (7932287-7932401) | |
| 90-200, gnl|panTro1|chr18 (21069289-21069405) | |
| 90-200, gnl|rheMac2|chr11 (7595940-7596054) | |
| 90-200, gnl|rheMac2|chr20 (19588301-19588417) | |
| 90-200, gnl|rn3|chr1 (178132157-178132274) | |
| 90-200, gnl|rn3|chr1 (178132152-178132266) | |
| 90-200, gnl|xenTro1|scaffold_6 (3594582-3594468) | |
| 94-197, gnl|bosTau2|chr25 (18479734-18479837) | |
| 94-197, gnl|canFam2|chr6 (27589332-27589200) | |
| 94-197, gnl|danRer3|chr2 (40339294-40339411) | |
| 94-197, gnl|dasNov1|scaffold_5189 (84736-84854) | |
| 94-197, gnl|echTel1|scaffold_318426 (55731-55610) | |
| 94-197, gnl|galGal2|chrUn (39379515-39379650) | |
| 94-197, gnl|hg17|chr16 (20711051-20711168) | |
| 94-197, gnl|Hg17|chr16 (20711058-20711166) | |
| 94-197, gnl|loxAfr1|scaffold_2361 (50591-50470) | |
| 94-197, gnl|mm7|chr7 (115703243-115703357) | |
| 94-197, gnl|Mm7|chr7 (115703250-115703353) | |
| 94-197, gnl|monDom2|scaffold_19 (41121080-41121201) | |
| 94-197, gnl|oryCun1|scaffold_214384 (110405-110521) | |
| 94-197, gnl|panTro1|chr18 (21132369-21132486) | |
| 94-197, gnl|rheMac2|chr20 (19663809-19663926) | |
| 94-197, gnl|rn3|chr1 (178214310-178214427) | |
| 94-197, gnl|xenTro1|scaffold_6 (3594573-3594467) | |
| 313-588, gnl|bosTau2|chr25 (18482878-18483151) | |
| 313-588, gnl|Hg17|chr16 (20715707-20715991) | |
| 313-588, gnl|Mm7|chr7 (115706555-115706820) | |
| 590-1041, gnl|bosTau2|chr25 (18483174-18483615) | |
| 590-1041, gnl|Hg17|chr16 (20716014-20716390) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (0.149858) | |
| nmm (0.132802) | |
| kid (0.129735) |