Ss1.1-Pig4-TMW8022D04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGGCTATGGAAGCGCCGGAGGAGAAAGAGGCGCAGGTTGCTGCATGGTTGAAAAAGAT ATTTGGAGATCATTCCATTCCACAATATGAGGTGAATCCTCGGACAACGGAGATTTTACA TCACCTTGCAGAATGCAACAGAGTCCGGGACAGGGATGTCTGCCTGGTAATAGAGGACTT GAAACAGAAAGCAAGGGAATATGAATCAGAAGCCAAGCATCTTCAAGACCTTCTCATGGA GAGTGTGAACTTTTCCCCTGCCAATCTCTCTAGCGCTGGCTCTAAGTATCTGAATGCTTT GGTTGACAGTGCAGTGGCCCTTGAAACAAAGGATACCTCACTAGCTAGTTTTATCCCTGC AGTGAATGATTTGACCTCTGATCTTTTTCGCACCAAATCCAAAAATGAAGAAATCCAGCT TGAACTGGGAAAACTGGAGAAAAATCTAACTGCAGCTTTAGTATTAGAAAAATGTCTACG AGAGGATCTGAAGAAGGCAGAGTTGCATCTGTCCATGGAAAGAGCCAAAGTTGACAATCG TCTTCAGAACATGGACTTCCTAAAAGCCAAGGCGGAGGAGTTCAGATCTGGAATTAGAGC TGCAGAGAAGCAACTTTCAGCCAGGGGAATGGATGCTTCTCTGTCTCATCAGTCACTGGT AGCACTTTCAGAGAAACTGGCAGAACTGAAACAACAGACTATGCCTTTGAAGAAAAAATT GGAGTCCTATTTAGATTTGATGCCGAATCCATCTCTTGCTCAGGTGAAAATTGAAGAAGC AAAGCGAGAATTAGATACAATTGAAGCTGAACTTACAAAGAAAGTAAACATGATGGAACT GTGACCAAAGCCAAATAAATTTCATCTTTCTTAACACAGTAAATTGAATAGGACTTTAAA GAATTATTTCGCCATAGCAGTCTTTAATAACTTAATTTCTGTGTTCTTTGATGAGATAAT AATGTCATTATTGATAGGATAGTGGTTTTTGGTTGTGTATTGCATTCTTATGCCCAAATA CATCATTTTCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGGCTATGGAAGCGCCGGAGGAGAAAGAGGCGCAGGTTGCTGCATGGTTGAAAAAGAT ATTTGGAGATCATTCCATTCCACAATATGAGGTGAATCCTCGGACAACGGAGATTTTACA TCACCTTGCAGAATGCAACAGAGTCCGGGACAGGGATGTCTGCCTGGTAATAGAGGACTT GAAACAGAAAGCAAGGGAATATGAATCAGAAGCCAAGCATCTTCAAGACCTTCTCATGGA GAGTGTGAACTTTTCCCCTGCCAATCTCTCTAGCGCTGGCTCTAAGTATCTGAATGCTTT GGTTGACAGTGCAGTGGCCCTTGAAACAAAGGATACCTCACTAGCTAGTTTTATCCCTGC AGTGAATGATTTGACCTCTGATCTTTTTCGCACCAAATCCAAAAATGAAGAAATCCAGCT TGAACTGGGAAAACTGGAGAAAAATCTAACTGCAGCTTTAGTATTAGAAAAATGTCTACG AGAGGATCTGAAGAAGGCAGAGTTGCATCTGTCCATGGAAAGAGCCAAAGTTGACAATCG TCTTCAGAACATGGACTTCCTAAAAGCCAAGGCGGAGGAGTTCAGATCTGGAATTAGAGC TGCAGAGAAGCAACTTTCAGCCAGGGGAATGGATGCTTCTCTGTCTCATCAGTCACTGGT AGCACTTTCAGAGAAACTGGCAGAACTGAAACAACAGACTATGCCTTTGAAGAAAAAATT GGAGTCCTATTTAGATTTGATGCCGAATCCATCTCTTGCTCAGGTGAAAATTGAAGAAGC AAAGCGAGAATTAGATACAATTGAAGCTGAACTTACAAAGAAAGTAAACATGATGGAACT GTGACCAAAGCCAAATAAATTTCATCTTTCTTAACACAGTAAATTGAATAGGACTTTAAA GAATTATTTCGCCATAGCAGTCTTTAATAACTTAATTTCTGTGTTCTTTGATGAGATAAT AATGTCATTATTGATAGGATAGTGGTTTTTGGTTGTGTATTGCATTCTTATGCCCAAATA CATCATTTTCAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 36-212, gnl|bosTau2|chr24 (33172983-33173159) | |
| 36-212, gnl|canFam2|chr7 (48090692-48090516) | |
| 36-212, gnl|dasNov1|scaffold_59653 (4635-4455) | |
| 36-212, gnl|echTel1|scaffold_302496 (24668-24808) | |
| 36-212, gnl|Hg17|chr18 (41939156-41939332) | |
| 36-212, gnl|hg17|chr5 (139941303-139941484) | |
| 36-212, gnl|loxAfr1|scaffold_4995 (32851-33108) | |
| 36-212, gnl|mm7|chr18 (78048697-78048521) | |
| 36-212, gnl|Mm7|chr18 (78048696-78048520) | |
| 36-212, gnl|monDom2|scaffold_0 (198744370-198744207) | |
| 36-212, gnl|oryCun1|scaffold_213499 (41886-41701) | |
| 36-212, gnl|panTro1|chr4 (146559271-146559452) | |
| 36-212, gnl|rheMac2|chr6 (136997350-136997529) | |
| 36-212, gnl|rn3|chr18 (74801818-74801642) | |
| 346-484, gnl|bosTau2|chr24 (33178081-33178219) | |
| 346-484, gnl|canFam2|chr7 (48083891-48084024) | |
| 346-484, gnl|canFam2|chr7 (48084042-48083892) | |
| 346-484, gnl|canFam2|chr7 (48084026-48083892) | |
| 346-484, gnl|canFam2|chr7 (48084026-48083892) | |
| 346-484, gnl|dasNov1|scaffold_59653 (4190-4323) | |
| 346-484, gnl|dasNov1|scaffold_59653 (4328-4191) | |
| 346-484, gnl|dasNov1|scaffold_59653 (4325-4190) | |
| 346-484, gnl|dasNov1|scaffold_59653 (4325-4190) | |
| 346-484, gnl|echTel1|scaffold_220677 (431-581) | |
| 346-484, gnl|echTel1|scaffold_302496 (25066-24956) | |
| 346-484, gnl|echTel1|scaffold_302496 (24954-25066) | |
| 346-484, gnl|echTel1|scaffold_302496 (24954-25066) | |
| 346-484, gnl|galGal2|chr14 (1102386-1102537) | |
| 346-484, gnl|hg17|chr18 (41953875-41954025) | |
| 346-484, gnl|Hg17|chr18 (41953887-41954025) | |
| 346-484, gnl|hg17|chr5 (139941618-139941752) | |
| 346-484, gnl|hg17|chr8 (73693872-73694003) | |
| 346-484, gnl|hg17|chrX (18643838-18643974) | |
| 346-484, gnl|loxAfr1|scaffold_4995 (42513-42380) | |
| 346-484, gnl|loxAfr1|scaffold_4995 (42364-42512) | |
| 346-484, gnl|loxAfr1|scaffold_4995 (42378-42512) | |
| 346-484, gnl|loxAfr1|scaffold_4995 (42378-42512) | |
| 346-484, gnl|mm7|chr18 (78043638-78043771) | |
| 346-484, gnl|mm7|chr18 (78043789-78043639) | |
| 346-484, gnl|mm7|chr18 (78043773-78043638) | |
| 346-484, gnl|mm7|chr18 (78043773-78043638) | |
| 346-484, gnl|Mm7|chr18 (78043775-78043637) | |
| 346-484, gnl|monDom2|scaffold_0 (198743950-198744088) | |
| 346-484, gnl|monDom2|scaffold_0 (198744090-198743950) | |
| 346-484, gnl|monDom2|scaffold_0 (198744090-198743950) | |
| 346-484, gnl|monDom2|scaffold_58 (4379245-4379396) | |
| 346-484, gnl|oryCun1|scaffold_38789 (213-346) | |
| 346-484, gnl|oryCun1|scaffold_38789 (364-214) | |
| 346-484, gnl|oryCun1|scaffold_38789 (348-213) | |
| 346-484, gnl|oryCun1|scaffold_38789 (348-213) | |
| 346-484, gnl|panTro1|chr17 (38287373-38287523) | |
| 346-484, gnl|panTro1|chr4 (146559586-146559720) | |
| 346-484, gnl|panTro1|chr7 (75704333-75704464) | |
| 346-484, gnl|panTro1|chrX (19361070-19361206) | |
| 346-484, gnl|rheMac2|chr18 (39169237-39169387) | |
| 346-484, gnl|rheMac2|chr6 (136997663-136997797) | |
| 346-484, gnl|rheMac2|chr8 (75105500-75105634) | |
| 346-484, gnl|rheMac2|chrX (16617079-16617215) | |
| 346-484, gnl|rn3|chr18 (74796903-74797028) | |
| 346-484, gnl|rn3|chr18 (74797046-74796896) | |
| 346-484, gnl|rn3|chr18 (74797030-74796895) | |
| 346-484, gnl|rn3|chr18 (74797030-74796895) | |
| 794-1032, gnl|bosTau2|chr24 (33182874-33183108) | |
| 794-1032, gnl|Hg17|chr18 (41962039-41962276) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-212, gnl|bosTau2|chr24 (33172983-33173159) | |
| 36-212, gnl|canFam2|chr7 (48090692-48090516) | |
| 36-212, gnl|dasNov1|scaffold_59653 (4635-4455) | |
| 36-212, gnl|echTel1|scaffold_302496 (24668-24808) | |
| 36-212, gnl|Hg17|chr18 (41939156-41939332) | |
| 36-212, gnl|hg17|chr5 (139941303-139941484) | |
| 36-212, gnl|loxAfr1|scaffold_4995 (32851-33108) | |
| 36-212, gnl|mm7|chr18 (78048697-78048521) | |
| 36-212, gnl|Mm7|chr18 (78048696-78048520) | |
| 36-212, gnl|monDom2|scaffold_0 (198744370-198744207) | |
| 36-212, gnl|oryCun1|scaffold_213499 (41886-41701) | |
| 36-212, gnl|panTro1|chr4 (146559271-146559452) | |
| 36-212, gnl|rheMac2|chr6 (136997350-136997529) | |
| 36-212, gnl|rn3|chr18 (74801818-74801642) | |
| 346-484, gnl|bosTau2|chr24 (33178081-33178219) | |
| 346-484, gnl|canFam2|chr7 (48083891-48084024) | |
| 346-484, gnl|canFam2|chr7 (48084042-48083892) | |
| 346-484, gnl|canFam2|chr7 (48084026-48083892) | |
| 346-484, gnl|canFam2|chr7 (48084026-48083892) | |
| 346-484, gnl|dasNov1|scaffold_59653 (4190-4323) | |
| 346-484, gnl|dasNov1|scaffold_59653 (4328-4191) | |
| 346-484, gnl|dasNov1|scaffold_59653 (4325-4190) | |
| 346-484, gnl|dasNov1|scaffold_59653 (4325-4190) | |
| 346-484, gnl|echTel1|scaffold_220677 (431-581) | |
| 346-484, gnl|echTel1|scaffold_302496 (25066-24956) | |
| 346-484, gnl|echTel1|scaffold_302496 (24954-25066) | |
| 346-484, gnl|echTel1|scaffold_302496 (24954-25066) | |
| 346-484, gnl|galGal2|chr14 (1102386-1102537) | |
| 346-484, gnl|hg17|chr18 (41953875-41954025) | |
| 346-484, gnl|Hg17|chr18 (41953887-41954025) | |
| 346-484, gnl|hg17|chr5 (139941618-139941752) | |
| 346-484, gnl|hg17|chr8 (73693872-73694003) | |
| 346-484, gnl|hg17|chrX (18643838-18643974) | |
| 346-484, gnl|loxAfr1|scaffold_4995 (42513-42380) | |
| 346-484, gnl|loxAfr1|scaffold_4995 (42364-42512) | |
| 346-484, gnl|loxAfr1|scaffold_4995 (42378-42512) | |
| 346-484, gnl|loxAfr1|scaffold_4995 (42378-42512) | |
| 346-484, gnl|mm7|chr18 (78043638-78043771) | |
| 346-484, gnl|mm7|chr18 (78043789-78043639) | |
| 346-484, gnl|mm7|chr18 (78043773-78043638) | |
| 346-484, gnl|mm7|chr18 (78043773-78043638) | |
| 346-484, gnl|Mm7|chr18 (78043775-78043637) | |
| 346-484, gnl|monDom2|scaffold_0 (198743950-198744088) | |
| 346-484, gnl|monDom2|scaffold_0 (198744090-198743950) | |
| 346-484, gnl|monDom2|scaffold_0 (198744090-198743950) | |
| 346-484, gnl|monDom2|scaffold_58 (4379245-4379396) | |
| 346-484, gnl|oryCun1|scaffold_38789 (213-346) | |
| 346-484, gnl|oryCun1|scaffold_38789 (364-214) | |
| 346-484, gnl|oryCun1|scaffold_38789 (348-213) | |
| 346-484, gnl|oryCun1|scaffold_38789 (348-213) | |
| 346-484, gnl|panTro1|chr17 (38287373-38287523) | |
| 346-484, gnl|panTro1|chr4 (146559586-146559720) | |
| 346-484, gnl|panTro1|chr7 (75704333-75704464) | |
| 346-484, gnl|panTro1|chrX (19361070-19361206) | |
| 346-484, gnl|rheMac2|chr18 (39169237-39169387) | |
| 346-484, gnl|rheMac2|chr6 (136997663-136997797) | |
| 346-484, gnl|rheMac2|chr8 (75105500-75105634) | |
| 346-484, gnl|rheMac2|chrX (16617079-16617215) | |
| 346-484, gnl|rn3|chr18 (74796903-74797028) | |
| 346-484, gnl|rn3|chr18 (74797046-74796896) | |
| 346-484, gnl|rn3|chr18 (74797030-74796895) | |
| 346-484, gnl|rn3|chr18 (74797030-74796895) | |
| 794-1032, gnl|bosTau2|chr24 (33182874-33183108) | |
| 794-1032, gnl|Hg17|chr18 (41962039-41962276) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| rec (0.346141) | |
| sme (0.305437) | |
| liv (0.292569) | |
| thg (0.253582) | |
| hea (0.204499) | |
| sag (0.182715) | |
| ill (0.175593) | |
| lin (0.145603) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.346141) | |
| sme (0.305437) | |
| liv (0.292569) | |
| thg (0.253582) | |
| hea (0.204499) | |
| sag (0.182715) | |
| ill (0.175593) | |
| lin (0.145603) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ecc (0.115035) | |
| ldo (0.0970026) |