Non-Coding RNA Search

Ss1.1-Pig4-TMW8022D21.3

Sequence:


               
               AAGAGAATCAGGCACTTCTGTACTTTAGTTTTAAAATTTGTAATGTTCTTTAAATTCATA
ATAAATTGATGCAATTTGATACTTAGGAACATATGAAAAGGTAATGTGAACTTTTCTGCT
TTTGTGTTCAAAGTTTTGGTTTTATAAAGCCAGATGGATTGAAGACTTAAATAAGCATTC
AAACACTCAAATAAGTCTAATGATTCTCTGTTACTGTTTGAATATCTTCATTCCTCTTAA
AATCACAAAAATTCTGTGTATCTGAATAAGTATAAAAAAATATTTTGCCCCCGCCCTTTT
TACATAGATTATTTTGTCCTAAATAAATAACACTTTGTTTTTCACTATCAAGGGCATTTG
CTGAACTGCAAAGATGTATAACAAATTAAAATCTGATGTGAATGATATTAATGCTACTTT
AACAAGCTGGGCTTCCTTAATATAAAAATTTAAATTTACATTTGTATCATGATTTCAGTA
TGCACTGTAAATTTCAATAACTTAGAAATTGTTTTATAACCATGAGAGTGACGTCTTAGA
ATGTTATCTGTAACATTTCACTAAGTACATACAGAAAATACTAGTATACAGTTTAATTTC
CCTAAAAAATAGTTTTTATTTCGCCAAAGTTTTATTTTTCTACATATTATTTTAGATTGT
GTTTTGCATTTTTATTCAAAACGCATAGTAAAAATGAAATAAAGTCAGTGATCCACTTGG
GTTGAATAACTCCTTTCCCAAATTCTGATTACTGACATTCTAATTATTTTCAAGCCTAAA
GAATTGAAAACAAAACAAACTAATGTATAGGGCAGACTATGCAATAGAGGTGACCAGTCT
TCAAAAGGGCTACTTATTATACCATGAAAGAACCACTGCTGGATGAATTTTGCCATGACA
GAAGTTACCATCATTCAGTAATGTGAGAACACCATGTAGCAGATTTGACTGAAGACAAGA
AGCTTTCAGGATACCCATTCCTCTCCTCACTTCAAGTAAGAAATCACTGTACAGTAGATG
AAGCTACACAGAGCCTACAGAAAGACCAAACCACCTTTGGAGAACTCATCAGGGCCTTTA
GCCTTTCTTGCCAGTTATAGAAATCCAGCTCTATAGGCAGGATTTATTACCTTGATTTAT
CCACTCAGTGGCAGTGAGAGAAACCTGAAACTTTCTCCCACACCTCTTCCCACATCTGTC
CTGTGCAGTGCTGGGCAGAGAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGAATCAGGCACTTCTGTACTTTAGTTTTAAAATTTGTAATGTTCTTTAAATTCATA
ATAAATTGATGCAATTTGATACTTAGGAACATATGAAAAGGTAATGTGAACTTTTCTGCT
TTTGTGTTCAAAGTTTTGGTTTTATAAAGCCAGATGGATTGAAGACTTAAATAAGCATTC
AAACACTCAAATAAGTCTAATGATTCTCTGTTACTGTTTGAATATCTTCATTCCTCTTAA
AATCACAAAAATTCTGTGTATCTGAATAAGTATAAAAAAATATTTTGCCCCCGCCCTTTT
TACATAGATTATTTTGTCCTAAATAAATAACACTTTGTTTTTCACTATCAAGGGCATTTG
CTGAACTGCAAAGATGTATAACAAATTAAAATCTGATGTGAATGATATTAATGCTACTTT
AACAAGCTGGGCTTCCTTAATATAAAAATTTAAATTTACATTTGTATCATGATTTCAGTA
TGCACTGTAAATTTCAATAACTTAGAAATTGTTTTATAACCATGAGAGTGACGTCTTAGA
ATGTTATCTGTAACATTTCACTAAGTACATACAGAAAATACTAGTATACAGTTTAATTTC
CCTAAAAAATAGTTTTTATTTCGCCAAAGTTTTATTTTTCTACATATTATTTTAGATTGT
GTTTTGCATTTTTATTCAAAACGCATAGTAAAAATGAAATAAAGTCAGTGATCCACTTGG
GTTGAATAACTCCTTTCCCAAATTCTGATTACTGACATTCTAATTATTTTCAAGCCTAAA
GAATTGAAAACAAAACAAACTAATGTATAGGGCAGACTATGCAATAGAGGTGACCAGTCT
TCAAAAGGGCTACTTATTATACCATGAAAGAACCACTGCTGGATGAATTTTGCCATGACA
GAAGTTACCATCATTCAGTAATGTGAGAACACCATGTAGCAGATTTGACTGAAGACAAGA
AGCTTTCAGGATACCCATTCCTCTCCTCACTTCAAGTAAGAAATCACTGTACAGTAGATG
AAGCTACACAGAGCCTACAGAAAGACCAAACCACCTTTGGAGAACTCATCAGGGCCTTTA
GCCTTTCTTGCCAGTTATAGAAATCCAGCTCTATAGGCAGGATTTATTACCTTGATTTAT
CCACTCAGTGGCAGTGAGAGAAACCTGAAACTTTCTCCCACACCTCTTCCCACATCTGTC
CTGTGCAGTGCTGGGCAGAGAGAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1224, gnl|bosTau2|chr14 (48182000-48180815)
               

               
               1-1224, gnl|Hg17|chr8 (87549004-87550261)
               

               
               1-1224, gnl|Mm7|chr4 (19538154-19537074)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1224, gnl|bosTau2|chr14 (48182000-48180815)
               

               
               1-1224, gnl|Hg17|chr8 (87549004-87550261)
               

               
               1-1224, gnl|Mm7|chr4 (19538154-19537074)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	1-1224, gnl\|bosTau2\|chr14 (48182000-48180815)
	1-1224, gnl\|Hg17\|chr8 (87549004-87550261)
	1-1224, gnl\|Mm7\|chr4 (19538154-19537074)