Non-Coding RNA Search

Ss1.1-Pig4-TMW8022E01.3

Sequence:


               
               TCTGTACCAGGACTTTCTGTTGTTGCTGGGGCTCTGGCATCAGCCATGGCAGCACCGCCC
CAACCACAAAGTACTACTGAGCCCCTGCCGGCCATGGTCCAGACTCTGCCCCTGGATGCT
AACTCTGTCCTAACTAGTAATCCCACTATCACCATCACCCCGACTCCCAGCACGGCTATC
CTGCAGCCCAGCCTAGTCATGGGAGAACAGAACTTACAGTGGATATTAAATGGTGCCACC
AGCTCACCACAAACCCAAGAACAAATTCAAGCATCTAAAGTTGAGAAGGTGTTTTTTACC
ACTGCTGTACCAGTAGCCAGTAGCACAGGCAGTGCTGTACAGCAGATTGGCCTCAGTGTT
CCTGTGATCATCATCAAACAAGAGGAGGCCTGTCAGTGTCAGTGTGCGTGCCGGGACTCT
GCCAAGGAGCGGGCGGCCAGCAGGCGGAAGGGCTGTTCTTCCCCGCCCCCTCCAGAGCTG
AGCGCCCAGCCTCCTGATGGGCCAGGCCTGAAGCTACCACCACAGACTTTTTCCCCACCC
CCGATCCCCCTGTCGTCATCCTCCGCTGCATCCTCCTCCTGTGAGCAAAGCAGACAAGCA
GTGACTCCTTCAGACCCTCCGACAGAAACGTTACGTGCCATGGATATGTCCGAGTTTCTG
TCTCTCCAGAGCCTGGACACCCCATCCAACCTGATTCCCATTGAAGCACTACTGCAGGAA
GAGGAGGAGATGGGCCTGACCAGCAGCTTCTCCAAGTGAAAGGCCCGAATGTGCTCCCCT
CCAGGAACAGAGGCCAAGCAGGAAGCAGAGGTGCGGTGCCTGTCCTCATGGGGTCAGCAG
TTTGAAGGATGAAGAAATCTACTGTTTGAAATCCTCACCTTTCAGACCTGTTTTCTTTAT
TCATATGTCAGGAGCATCCATTTTTAAGGAACTGATCTTTGGAAAAAACAAAAAAACAAA
CAAAAAAAACAAAACAAAAAAAAAGCTAAGTTATAAATGAACTGTTTGGCTGCACTGTAT
GTCACTTTTGCTTATTGTCATGTGAACTTGGAAATTAAGGTTACTCGTATGCATAAAAAT
TCTAAATGAAAGGGTGTGGTTTCCATCAATCTGATGCTGCCCATCACTTGCACTGGGGTC
TTTGTGGTCTGGGCAGTAGAGTTCGGCGTGTCGGGTGTTGCTCCTCCCCATGCGTCTTTT
GAGTCTGAGGCCGAAGCTTGCTTGGAAGGCCAGACCCTCGCTCCGTCAGAGAAGGAAGTG
GCAAAGCCAGGTCAGACAGCTGTGAGCTGGACAGGGATCGGGTGAGCTGGTTTTGTTGTC
TGTGCTTGGTGTGGTGGAGCTCAGGGCGACTGTGGCAGGTGTCATCCTGCAGCCAGCTAC
GGCACAAACAGGCAGCTAAAAGGCTGGCCTGAGGCCTAGGGGACAGCCTGCTTCCATCAG
GGCCCTAGGCAAGTCGTTGATAGCTCCTGTCGCTGACTGGTGCCTGTGCAGAGCAGGCTG
TAGGAACTTGATCAGTCTTTGCCTTCCCGGCATATTCTCTCTCTCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTACCAGGACTTTCTGTTGTTGCTGGGGCTCTGGCATCAGCCATGGCAGCACCGCCC
CAACCACAAAGTACTACTGAGCCCCTGCCGGCCATGGTCCAGACTCTGCCCCTGGATGCT
AACTCTGTCCTAACTAGTAATCCCACTATCACCATCACCCCGACTCCCAGCACGGCTATC
CTGCAGCCCAGCCTAGTCATGGGAGAACAGAACTTACAGTGGATATTAAATGGTGCCACC
AGCTCACCACAAACCCAAGAACAAATTCAAGCATCTAAAGTTGAGAAGGTGTTTTTTACC
ACTGCTGTACCAGTAGCCAGTAGCACAGGCAGTGCTGTACAGCAGATTGGCCTCAGTGTT
CCTGTGATCATCATCAAACAAGAGGAGGCCTGTCAGTGTCAGTGTGCGTGCCGGGACTCT
GCCAAGGAGCGGGCGGCCAGCAGGCGGAAGGGCTGTTCTTCCCCGCCCCCTCCAGAGCTG
AGCGCCCAGCCTCCTGATGGGCCAGGCCTGAAGCTACCACCACAGACTTTTTCCCCACCC
CCGATCCCCCTGTCGTCATCCTCCGCTGCATCCTCCTCCTGTGAGCAAAGCAGACAAGCA
GTGACTCCTTCAGACCCTCCGACAGAAACGTTACGTGCCATGGATATGTCCGAGTTTCTG
TCTCTCCAGAGCCTGGACACCCCATCCAACCTGATTCCCATTGAAGCACTACTGCAGGAA
GAGGAGGAGATGGGCCTGACCAGCAGCTTCTCCAAGTGAAAGGCCCGAATGTGCTCCCCT
CCAGGAACAGAGGCCAAGCAGGAAGCAGAGGTGCGGTGCCTGTCCTCATGGGGTCAGCAG
TTTGAAGGATGAAGAAATCTACTGTTTGAAATCCTCACCTTTCAGACCTGTTTTCTTTAT
TCATATGTCAGGAGCATCCATTTTTAAGGAACTGATCTTTGGAAAAAACAAAAAAACAAA
CAAAAAAAACAAAACAAAAAAAAAGCTAAGTTATAAATGAACTGTTTGGCTGCACTGTAT
GTCACTTTTGCTTATTGTCATGTGAACTTGGAAATTAAGGTTACTCGTATGCATAAAAAT
TCTAAATGAAAGGGTGTGGTTTCCATCAATCTGATGCTGCCCATCACTTGCACTGGGGTC
TTTGTGGTCTGGGCAGTAGAGTTCGGCGTGTCGGGTGTTGCTCCTCCCCATGCGTCTTTT
GAGTCTGAGGCCGAAGCTTGCTTGGAAGGCCAGACCCTCGCTCCGTCAGAGAAGGAAGTG
GCAAAGCCAGGTCAGACAGCTGTGAGCTGGACAGGGATCGGGTGAGCTGGTTTTGTTGTC
TGTGCTTGGTGTGGTGGAGCTCAGGGCGACTGTGGCAGGTGTCATCCTGCAGCCAGCTAC
GGCACAAACAGGCAGCTAAAAGGCTGGCCTGAGGCCTAGGGGACAGCCTGCTTCCATCAG
GGCCCTAGGCAAGTCGTTGATAGCTCCTGTCGCTGACTGGTGCCTGTGCAGAGCAGGCTG
TAGGAACTTGATCAGTCTTTGCCTTCCCGGCATATTCTCTCTCTCTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q80W60_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q80W60_MOUSE

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               405-524, - strand, RNAz p=0.569983
               

               
               841-958, - strand, RNAz p=0.94318
               

               
               1234-1431, + strand, RNAz p=0.879236

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               405-524, - strand, RNAz p=0.569983
               

               
               841-958, - strand, RNAz p=0.94318
               

               
               1234-1431, + strand, RNAz p=0.879236

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               25-267, gnl|bosTau2|chr3 (75279075-75279317)
               

               
               25-267, gnl|canFam2|chr15 (7717243-7716969)
               

               
               25-267, gnl|dasNov1|scaffold_20843 (26363-26643)
               

               
               25-267, gnl|echTel1|scaffold_320258 (40534-40248)
               

               
               25-267, gnl|fr1|chrUn (286300775-286300492)
               

               
               25-267, gnl|galGal2|chr23 (3115214-3114964)
               

               
               25-267, gnl|hg17|chr1 (37956879-37957165)
               

               
               25-267, gnl|Hg17|chr1 (37957128-37956886)
               

               
               25-267, gnl|loxAfr1|scaffold_7945 (61902-62191)
               

               
               25-267, gnl|mm7|chr4 (124283573-124283287)
               

               
               25-267, gnl|Mm7|chr4 (124283322-124283564)
               

               
               25-267, gnl|monDom2|scaffold_43 (11677824-11677568)
               

               
               25-267, gnl|oryCun1|scaffold_214111 (58059-57791)
               

               
               25-267, gnl|panTro1|chr1 (38799410-38799696)
               

               
               25-267, gnl|rheMac2|chr1 (40691027-40691313)
               

               
               25-267, gnl|rn3|chr5 (144182288-144182002)
               

               
               25-267, gnl|tetNig1|chrUn_random (115285178-115284895)
               

               
               25-267, gnl|xenTro1|scaffold_864 (408071-408312)
               


               
               326-1548, gnl|bosTau2|chr3 (75284158-75285356)
               

               
               326-1548, gnl|Hg17|chr1 (37950334-37949128)
               

               
               326-1548, gnl|Mm7|chr4 (124288791-124289970)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-267, gnl|bosTau2|chr3 (75279075-75279317)
               

               
               25-267, gnl|canFam2|chr15 (7717243-7716969)
               

               
               25-267, gnl|dasNov1|scaffold_20843 (26363-26643)
               

               
               25-267, gnl|echTel1|scaffold_320258 (40534-40248)
               

               
               25-267, gnl|fr1|chrUn (286300775-286300492)
               

               
               25-267, gnl|galGal2|chr23 (3115214-3114964)
               

               
               25-267, gnl|hg17|chr1 (37956879-37957165)
               

               
               25-267, gnl|Hg17|chr1 (37957128-37956886)
               

               
               25-267, gnl|loxAfr1|scaffold_7945 (61902-62191)
               

               
               25-267, gnl|mm7|chr4 (124283573-124283287)
               

               
               25-267, gnl|Mm7|chr4 (124283322-124283564)
               

               
               25-267, gnl|monDom2|scaffold_43 (11677824-11677568)
               

               
               25-267, gnl|oryCun1|scaffold_214111 (58059-57791)
               

               
               25-267, gnl|panTro1|chr1 (38799410-38799696)
               

               
               25-267, gnl|rheMac2|chr1 (40691027-40691313)
               

               
               25-267, gnl|rn3|chr5 (144182288-144182002)
               

               
               25-267, gnl|tetNig1|chrUn_random (115285178-115284895)
               

               
               25-267, gnl|xenTro1|scaffold_864 (408071-408312)
               


               
               326-1548, gnl|bosTau2|chr3 (75284158-75285356)
               

               
               326-1548, gnl|Hg17|chr1 (37950334-37949128)
               

               
               326-1548, gnl|Mm7|chr4 (124288791-124289970)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ste (0.135208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)

	405-524, - strand, RNAz p=0.569983
	841-958, - strand, RNAz p=0.94318
	1234-1431, + strand, RNAz p=0.879236

	25-267, gnl\|bosTau2\|chr3 (75279075-75279317)
	25-267, gnl\|canFam2\|chr15 (7717243-7716969)
	25-267, gnl\|dasNov1\|scaffold_20843 (26363-26643)
	25-267, gnl\|echTel1\|scaffold_320258 (40534-40248)
	25-267, gnl\|fr1\|chrUn (286300775-286300492)
	25-267, gnl\|galGal2\|chr23 (3115214-3114964)
	25-267, gnl\|hg17\|chr1 (37956879-37957165)
	25-267, gnl\|Hg17\|chr1 (37957128-37956886)
	25-267, gnl\|loxAfr1\|scaffold_7945 (61902-62191)
	25-267, gnl\|mm7\|chr4 (124283573-124283287)
	25-267, gnl\|Mm7\|chr4 (124283322-124283564)
	25-267, gnl\|monDom2\|scaffold_43 (11677824-11677568)
	25-267, gnl\|oryCun1\|scaffold_214111 (58059-57791)
	25-267, gnl\|panTro1\|chr1 (38799410-38799696)
	25-267, gnl\|rheMac2\|chr1 (40691027-40691313)
	25-267, gnl\|rn3\|chr5 (144182288-144182002)
	25-267, gnl\|tetNig1\|chrUn_random (115285178-115284895)
	25-267, gnl\|xenTro1\|scaffold_864 (408071-408312)

	326-1548, gnl\|bosTau2\|chr3 (75284158-75285356)
	326-1548, gnl\|Hg17\|chr1 (37950334-37949128)
	326-1548, gnl\|Mm7\|chr4 (124288791-124289970)