Non-Coding RNA Search

Ss1.1-Pig4-TMW8022E06.3

Sequence:


               
               GGAAACTTCCTTATTATTGTGACGCCGAAATCCGAGAAACCCCGAGCCGGGCCGGTGGCG
CTCTTACCGTCGGAATCCCGAGCGGCGGTGCGGCGGTTTTTAAGGAGTAATTCCTCCCAG
AAAAGTAGAAATAATAAATTTCTTATCCTGTTCCCTGTCACTTCCTGCCTCTACCACTGT
CCCCCCCCCCCTTTCTCTCTTCCCCTCATCCCATTCTTGGTGACCTGACTCTGTCCCCTT
CCTCTCCGCTCCTTCTAGTGGATGCATGCGGTCTGCTTTAGTTTTTATTTCTATTTAAAT
TGCAAAATTTCTACTCAGATTTTTTTTTTTTCTCCTCTTCCCTAACGGTTAAGACTCAAG
GACATTCTTTATTATGGAACTTTTGTTTTATTGCATTTGAAATGTTTGTTTACAGTGGGA
TTTCGGAGGGGGGGGATTGTGTTTAAAGCAAATATATGTATTTCAAGAATCATGACATGC
TCACCTTCTTCACCACGGATAAGAACATGCTACATGAGCAAAGAATCTATGTCCGCCTAA
TTCCTAGTCACTAGAGAAGAGACTTATTTATATAAAACGAAGTATTTATGAACCGTGAGA
CAGCATCAAATCTCAATGAAGGATTGTAGATTTTGGCTTTTTCTTTTTGTTTTTAAAACT
TATTCCAATTGCTAAATTGGTAGTTTTTCAGTCTTTATAATACAAGATTAAAAAAAAAGA
TATACTGTTATACGAAATGTTTATTTTCTATGTGTGTGCATATAGTTCACTATTATGCAA
TAAATTTGGTGTTTTAACGTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAACTTCCTTATTATTGTGACGCCGAAATCCGAGAAACCCCGAGCCGGGCCGGTGGCG
CTCTTACCGTCGGAATCCCGAGCGGCGGTGCGGCGGTTTTTAAGGAGTAATTCCTCCCAG
AAAAGTAGAAATAATAAATTTCTTATCCTGTTCCCTGTCACTTCCTGCCTCTACCACTGT
CCCCCCCCCCCTTTCTCTCTTCCCCTCATCCCATTCTTGGTGACCTGACTCTGTCCCCTT
CCTCTCCGCTCCTTCTAGTGGATGCATGCGGTCTGCTTTAGTTTTTATTTCTATTTAAAT
TGCAAAATTTCTACTCAGATTTTTTTTTTTTCTCCTCTTCCCTAACGGTTAAGACTCAAG
GACATTCTTTATTATGGAACTTTTGTTTTATTGCATTTGAAATGTTTGTTTACAGTGGGA
TTTCGGAGGGGGGGGATTGTGTTTAAAGCAAATATATGTATTTCAAGAATCATGACATGC
TCACCTTCTTCACCACGGATAAGAACATGCTACATGAGCAAAGAATCTATGTCCGCCTAA
TTCCTAGTCACTAGAGAAGAGACTTATTTATATAAAACGAAGTATTTATGAACCGTGAGA
CAGCATCAAATCTCAATGAAGGATTGTAGATTTTGGCTTTTTCTTTTTGTTTTTAAAACT
TATTCCAATTGCTAAATTGGTAGTTTTTCAGTCTTTATAATACAAGATTAAAAAAAAAGA
TATACTGTTATACGAAATGTTTATTTTCTATGTGTGTGCATATAGTTCACTATTATGCAA
TAAATTTGGTGTTTTAACGTAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               158-802, gnl|bosTau2|chr6 (19343095-19342486)
               

               
               158-802, gnl|Hg17|chr4 (89986211-89986866)
               

               
               158-802, gnl|Mm7|chr6 (58888016-58888645)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               158-802, gnl|bosTau2|chr6 (19343095-19342486)
               

               
               158-802, gnl|Hg17|chr4 (89986211-89986866)
               

               
               158-802, gnl|Mm7|chr6 (58888016-58888645)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fce (0.543183)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

	158-802, gnl\|bosTau2\|chr6 (19343095-19342486)
	158-802, gnl\|Hg17\|chr4 (89986211-89986866)
	158-802, gnl\|Mm7\|chr6 (58888016-58888645)

	fce (0.543183)
	fty (0.17584)
	fhi (0.169578)
	fco (0.157208)
	lnt (0.142308)
	cst (0.140036)
	ute (0.132784)
	cly (0.120642)
	jca (0.11396)