Non-Coding RNA Search

Ss1.1-Pig4-TMW8022G04.5

Sequence:


               
               GCGATGCTGCAGCCACAGCGACCTCTGTGACCTCACGCTGCTGAAGCCCCTGTGGCAGCT
CTTCACCCAAATGGAGTACAGCCTGTTTGAGGACGTGACCCAGCCTGGCATCCTGCTGCC
CTTGCACCGGGCCCTCACCGAGCTCTTCTTCGTCACTGAGAACCGCGCCCAGGAGCTCGG
CCTGCTGCAGGATTACCTGCTGGCCTTGACCACCGACGACCACCTTCTCCGCTGCGCGGC
ACAGGCTCTGCAGAACATCGCTGCCATCAGCCTGGCCATCAACTACCCGAACAAGGCCAC
TCGCCTCTGGAATGTCGAGTGTTAGCCCTTGGTGTGGCGTGCACGGAGACAGATAATCTG
TCCACGAGGATCTTAGAGCAGCTGCCTGAACTCATTCGGGAAGACTCCCGTGGCGTCGGC
GCCTGGCTCTCCTTGTGCACTCCTCTTCCTCCGACTCGAATGCTAAGCAGCCACGTCTCC
AAGAACTTCCCGTGTCACAGGCGAGGCACCCGCACATACCATAGCATGTGAGAATAAGCA
GAGCCGTGCAGAATCATCAAGAAAGGCCAGGCAGGAGGCCCTTGAAAAGGTTGCTCAGAG
ACCTGCCTCCTCCAGGGTCTGTCCCTGCAGAAGCCAAAGCCCCAGGAAGGCCTGGCCATA
GCTGCACAGGAAAGGGCTGTCTCCTTTGAGCTGGACCTGTCTGCACTTGCCCTTCAGGGG
CGATGGCGTCTGCCCAGAGCTGCCTTCCTCAGCAGAACCTCCAGCAGCAGCGGCCCACCC
TGGGAGCTCCTCTTTTGCTTTTGCTTCTTGAGGCTGGTCTCCAAACCCAAACCGGTGGAA
GCCCCTCCTGGTTCCCACCTGGTCCCCAGCATTCAGTCCGGGACCCACTGCCGCACTAGC
CCCTGCGTAGCCACAGCGTCCCAGAGAAATCCTTGGTGAGAAAAGTGCCCTTGGGAACAG
CCAGCAGCCACCGTGCGCGTCCATCTGTGCACTGCTCCCGGCACAGGCCCATTTTTTTAG
TTGTTGTTTTAACTTGTTTAGTTTCCACCTCATGTTTTTAGAAAGAACCACCTTGACTCC
CCTGAGAGGGCCTCGGGGGGTGACCGTCGGTCCGCCGTGCAGGGGGACAAACTGGCTCAT
TTGACAGTCGCAGAACTTGAATATGCTTTGGCTTCGGTACCTAAAGACTTGACATGTAAT
CAGAGGAGATCTTATTTTAGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGATGCTGCAGCCACAGCGACCTCTGTGACCTCACGCTGCTGAAGCCCCTGTGGCAGCT
CTTCACCCAAATGGAGTACAGCCTGTTTGAGGACGTGACCCAGCCTGGCATCCTGCTGCC
CTTGCACCGGGCCCTCACCGAGCTCTTCTTCGTCACTGAGAACCGCGCCCAGGAGCTCGG
CCTGCTGCAGGATTACCTGCTGGCCTTGACCACCGACGACCACCTTCTCCGCTGCGCGGC
ACAGGCTCTGCAGAACATCGCTGCCATCAGCCTGGCCATCAACTACCCGAACAAGGCCAC
TCGCCTCTGGAATGTCGAGTGTTAGCCCTTGGTGTGGCGTGCACGGAGACAGATAATCTG
TCCACGAGGATCTTAGAGCAGCTGCCTGAACTCATTCGGGAAGACTCCCGTGGCGTCGGC
GCCTGGCTCTCCTTGTGCACTCCTCTTCCTCCGACTCGAATGCTAAGCAGCCACGTCTCC
AAGAACTTCCCGTGTCACAGGCGAGGCACCCGCACATACCATAGCATGTGAGAATAAGCA
GAGCCGTGCAGAATCATCAAGAAAGGCCAGGCAGGAGGCCCTTGAAAAGGTTGCTCAGAG
ACCTGCCTCCTCCAGGGTCTGTCCCTGCAGAAGCCAAAGCCCCAGGAAGGCCTGGCCATA
GCTGCACAGGAAAGGGCTGTCTCCTTTGAGCTGGACCTGTCTGCACTTGCCCTTCAGGGG
CGATGGCGTCTGCCCAGAGCTGCCTTCCTCAGCAGAACCTCCAGCAGCAGCGGCCCACCC
TGGGAGCTCCTCTTTTGCTTTTGCTTCTTGAGGCTGGTCTCCAAACCCAAACCGGTGGAA
GCCCCTCCTGGTTCCCACCTGGTCCCCAGCATTCAGTCCGGGACCCACTGCCGCACTAGC
CCCTGCGTAGCCACAGCGTCCCAGAGAAATCCTTGGTGAGAAAAGTGCCCTTGGGAACAG
CCAGCAGCCACCGTGCGCGTCCATCTGTGCACTGCTCCCGGCACAGGCCCATTTTTTTAG
TTGTTGTTTTAACTTGTTTAGTTTCCACCTCATGTTTTTAGAAAGAACCACCTTGACTCC
CCTGAGAGGGCCTCGGGGGGTGACCGTCGGTCCGCCGTGCAGGGGGACAAACTGGCTCAT
TTGACAGTCGCAGAACTTGAATATGCTTTGGCTTCGGTACCTAAAGACTTGACATGTAAT
CAGAGGAGATCTTATTTTAGAAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37359926|dbj|BAC97941.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37359926|dbj|BAC97941.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               13-173, gnl|bosTau2|chr19 (19189678-19189518)
               

               
               13-173, gnl|Hg17|chr17 (3859806-3859646)
               

               
               13-173, gnl|Mm7|chr11 (73003898-73004058)
               


               
               240-600, gnl|bosTau2|chr19 (19187175-19186814)
               

               
               240-600, gnl|Hg17|chr17 (3857018-3856650)
               

               
               240-600, gnl|Mm7|chr11 (73006206-73006536)
               


               
               628-1224, gnl|bosTau2|chr19 (19186818-19186216)
               

               
               628-1224, gnl|Hg17|chr17 (3856654-3856082)
               

               
               628-1224, gnl|Mm7|chr11 (73006532-73007071)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-173, gnl|bosTau2|chr19 (19189678-19189518)
               

               
               13-173, gnl|Hg17|chr17 (3859806-3859646)
               

               
               13-173, gnl|Mm7|chr11 (73003898-73004058)
               


               
               240-600, gnl|bosTau2|chr19 (19187175-19186814)
               

               
               240-600, gnl|Hg17|chr17 (3857018-3856650)
               

               
               240-600, gnl|Mm7|chr11 (73006206-73006536)
               


               
               628-1224, gnl|bosTau2|chr19 (19186818-19186216)
               

               
               628-1224, gnl|Hg17|chr17 (3856654-3856082)
               

               
               628-1224, gnl|Mm7|chr11 (73006532-73007071)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pla (0.401016)
               

               
               cki (0.330469)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               cki (0.330469)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	13-173, gnl\|bosTau2\|chr19 (19189678-19189518)
	13-173, gnl\|Hg17\|chr17 (3859806-3859646)
	13-173, gnl\|Mm7\|chr11 (73003898-73004058)

	240-600, gnl\|bosTau2\|chr19 (19187175-19186814)
	240-600, gnl\|Hg17\|chr17 (3857018-3856650)
	240-600, gnl\|Mm7\|chr11 (73006206-73006536)

	628-1224, gnl\|bosTau2\|chr19 (19186818-19186216)
	628-1224, gnl\|Hg17\|chr17 (3856654-3856082)
	628-1224, gnl\|Mm7\|chr11 (73006532-73007071)