Non-Coding RNA Search

Ss1.1-Pig4-TMW8022G19.3

Sequence:


               
               CGGCCACCCAGGACCGTACCTCCTGCCTTCCCGTCCACTTTGTGGTGCTCACTCAGTTGT
ACAACGCCATCATGAATATACTCTAATTGGAAAAGCACTTGTTCTCTCTGGCTCAGTTCC
TTCTTCCCGCAACCTCAGTCCAAGGAACCTGCTCCACTCTGCAAATACCCCACTTGTTCC
TCTTGAGACCACTCTGCACAGTCCTGCACTGTGATTCCTTCTCAGCAGGCACATGTCATT
TCTGCAGTGTTCATTACCAGAGTGACTCACTGACACTTCTCTCATGGACCTGGAAACTTC
CATAAACAGTGACTTTCAGCCAGTGTTAATGGTGTGTGCGGCCCCAAACCACTGGGCCAC
AGGAATTTTTTTTGTTGTTTTTTAAGAGGGAAACAGAAGAGACAGTATCCTTTTGCACAA
GAGTCTGTGTTTTCAGTCTCTGTTTAATAACGGCAGTTTAGCCCTCTGGATGAAATCCTC
TAGTTTTTGGTGTATGGCCTGTGGGTTACCTGAACTCCATAATCTGGGACTTTTGAAAAC
TAAGAACCAGCTCAAGTACATGATTTCATAATGGGGTTTCTGTCTCCCTCATGCTTCCAT
CTTGGCATGAGTGTATTGGTTGACTTTATACCTGTGTGTAGATACAAAAGGTCTGGAGAC
ATCTTCATTTTCTTTATTTATTTTAAGTTGTTTTGTCATATGGTTTTTGTGACTTTCTTT
TAATTTTTTTAATTCACGAGGACCAGGTACAGTAGCTGAAACCCAACTCAGATCCATCAT
AGGATTGACTACATACCTCTGTCCTAGAAGCCGGAAAAGGAGTGAAAACAAATTGGGGAG
ATCATGCCTATAAAGTAATATATTCAGAACCACCCAGCAGTAGGTTTTGTTGAGAACAAA
CTGGGTAAACATTCTGCCATATTCCTTATTAAAAGTGGCCAGCGTTTCATGAAGGACAAC
ATTTTTATACAGAAGGCAGTCAAGACGCTGAACCCAGAGCCATGGAGGCAAGTACCTTCA
TTAGTTTTATATAGTCACAATGGAAATATATTTTCTAGTGAATTCTTACTGAAAGCCAGG
TCTCTCCTCTCATTAGATCAAAAAGGACTCATGTACATATCACAATCGAAAGTGTTTGCT
CATAAAATCAGTTATAAATATGGTGAATTTTTTCTGGACCATAGGAATATTATTTCAAAG
AAATATTACAACAACCATTAAATTCGTACTTGAAGTTAAGCCTTCATGGTAGGACTTTTT
AAATAAAAAAATAAAATTTAAAAAAAAAAAGCCTTTTTAAAGCATTAAGGCTAACTGAAG
TATTTTATGACTCCTCATTCCAGGCCCGAGAGGGTTGTCTTTAAGACTCCATTTCTACCC
CTCTGTTGCTTTCGTTTCTGTCTGTGAGGGCAGTGGGCATGGGCTTGCCTCCCATGAGCC
GCTCTGGTCAGGCTCTTGAGCTCTAGTCATCCTTAGAGAGAATCATGCAAATTTTAAAAG
TTCTTCCAAGAGACTTCCATATTCTGGTTATTAACAAAAAAAAGGAAAAATGTAATAACT
GATATGATTTTGTAAAAGTATTTTTCTTGAAATAATCTAACGTTTAAAACATTATATTAA
AAAAAAAGTTGTGTGGTGGGAATATGAATGCAGAGAAATAACTTGTAAATGGATAATTTT
GTTCTCTGTACCACCAATTGGGGGGGAGGGGTTGACTTTCGCAATGTATAGGTTAAAAAA
TCTGATATATCAAACCATTTGTATCTAAATGTGTACAGTGTAAAATTGACTTTAAAAATA
TTGCAGTGCTATTTTTTCTTAATCAGAAAGGAAAAATTCTCAAGGCCTTTTGAAGAGCAT
AAGATGATGAAGATTGTAAACTTGTATAAAATTATCTTGGTGAGAAGACAAATTGTAAAG
TAGATATTTGTAATCTTTTACCACTTTGGGGTTGCTTTTTTTCCCAGAATTCATCAAAAC
TTTGAATTTTTTTTTAAAATGGGCTGTTTTTAATGCAGGGGCTTTTCTTCCCTAAAAACC
CAATTCTCAGCAAAAAAAGAAAAAAACCACAAAAAACAAAAAACCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCACCCAGGACCGTACCTCCTGCCTTCCCGTCCACTTTGTGGTGCTCACTCAGTTGT
ACAACGCCATCATGAATATACTCTAATTGGAAAAGCACTTGTTCTCTCTGGCTCAGTTCC
TTCTTCCCGCAACCTCAGTCCAAGGAACCTGCTCCACTCTGCAAATACCCCACTTGTTCC
TCTTGAGACCACTCTGCACAGTCCTGCACTGTGATTCCTTCTCAGCAGGCACATGTCATT
TCTGCAGTGTTCATTACCAGAGTGACTCACTGACACTTCTCTCATGGACCTGGAAACTTC
CATAAACAGTGACTTTCAGCCAGTGTTAATGGTGTGTGCGGCCCCAAACCACTGGGCCAC
AGGAATTTTTTTTGTTGTTTTTTAAGAGGGAAACAGAAGAGACAGTATCCTTTTGCACAA
GAGTCTGTGTTTTCAGTCTCTGTTTAATAACGGCAGTTTAGCCCTCTGGATGAAATCCTC
TAGTTTTTGGTGTATGGCCTGTGGGTTACCTGAACTCCATAATCTGGGACTTTTGAAAAC
TAAGAACCAGCTCAAGTACATGATTTCATAATGGGGTTTCTGTCTCCCTCATGCTTCCAT
CTTGGCATGAGTGTATTGGTTGACTTTATACCTGTGTGTAGATACAAAAGGTCTGGAGAC
ATCTTCATTTTCTTTATTTATTTTAAGTTGTTTTGTCATATGGTTTTTGTGACTTTCTTT
TAATTTTTTTAATTCACGAGGACCAGGTACAGTAGCTGAAACCCAACTCAGATCCATCAT
AGGATTGACTACATACCTCTGTCCTAGAAGCCGGAAAAGGAGTGAAAACAAATTGGGGAG
ATCATGCCTATAAAGTAATATATTCAGAACCACCCAGCAGTAGGTTTTGTTGAGAACAAA
CTGGGTAAACATTCTGCCATATTCCTTATTAAAAGTGGCCAGCGTTTCATGAAGGACAAC
ATTTTTATACAGAAGGCAGTCAAGACGCTGAACCCAGAGCCATGGAGGCAAGTACCTTCA
TTAGTTTTATATAGTCACAATGGAAATATATTTTCTAGTGAATTCTTACTGAAAGCCAGG
TCTCTCCTCTCATTAGATCAAAAAGGACTCATGTACATATCACAATCGAAAGTGTTTGCT
CATAAAATCAGTTATAAATATGGTGAATTTTTTCTGGACCATAGGAATATTATTTCAAAG
AAATATTACAACAACCATTAAATTCGTACTTGAAGTTAAGCCTTCATGGTAGGACTTTTT
AAATAAAAAAATAAAATTTAAAAAAAAAAAGCCTTTTTAAAGCATTAAGGCTAACTGAAG
TATTTTATGACTCCTCATTCCAGGCCCGAGAGGGTTGTCTTTAAGACTCCATTTCTACCC
CTCTGTTGCTTTCGTTTCTGTCTGTGAGGGCAGTGGGCATGGGCTTGCCTCCCATGAGCC
GCTCTGGTCAGGCTCTTGAGCTCTAGTCATCCTTAGAGAGAATCATGCAAATTTTAAAAG
TTCTTCCAAGAGACTTCCATATTCTGGTTATTAACAAAAAAAAGGAAAAATGTAATAACT
GATATGATTTTGTAAAAGTATTTTTCTTGAAATAATCTAACGTTTAAAACATTATATTAA
AAAAAAAGTTGTGTGGTGGGAATATGAATGCAGAGAAATAACTTGTAAATGGATAATTTT
GTTCTCTGTACCACCAATTGGGGGGGAGGGGTTGACTTTCGCAATGTATAGGTTAAAAAA
TCTGATATATCAAACCATTTGTATCTAAATGTGTACAGTGTAAAATTGACTTTAAAAATA
TTGCAGTGCTATTTTTTCTTAATCAGAAAGGAAAAATTCTCAAGGCCTTTTGAAGAGCAT
AAGATGATGAAGATTGTAAACTTGTATAAAATTATCTTGGTGAGAAGACAAATTGTAAAG
TAGATATTTGTAATCTTTTACCACTTTGGGGTTGCTTTTTTTCCCAGAATTCATCAAAAC
TTTGAATTTTTTTTTAAAATGGGCTGTTTTTAATGCAGGGGCTTTTCTTCCCTAAAAACC
CAATTCTCAGCAAAAAAAGAAAAAAACCACAAAAAACAAAAAACCCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1987-2088, - strand, RNAz p=0.523042

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1987-2088, - strand, RNAz p=0.523042

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-2088, gnl|bosTau2|chr17 (33581000-33583066)
               

               
               1-2088, gnl|Hg17|chr12 (114861876-114859821)
               

               
               1-2088, gnl|Mm7|chr5 (117991739-117993683)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2088, gnl|bosTau2|chr17 (33581000-33583066)
               

               
               1-2088, gnl|Hg17|chr12 (114861876-114859821)
               

               
               1-2088, gnl|Mm7|chr5 (117991739-117993683)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               fce (0.543183)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               ste (0.270416)
               

               
               ese (0.253004)
               

               
               cbl (0.229595)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               eep (0.122564)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               ste (0.270416)
               

               
               ese (0.253004)
               

               
               cbl (0.229595)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               eep (0.122564)

	1-2088, gnl\|bosTau2\|chr17 (33581000-33583066)
	1-2088, gnl\|Hg17\|chr12 (114861876-114859821)
	1-2088, gnl\|Mm7\|chr5 (117991739-117993683)

	fce (0.543183)
	eye (0.341006)
	fhi (0.339155)
	ste (0.270416)
	ese (0.253004)
	cbl (0.229595)
	sag (0.182715)
	fty (0.17584)
	rec (0.17307)
	tbr (0.154178)
	liv (0.146284)
	spl (0.143184)
	cst (0.140036)
	kid (0.129735)
	ova (0.129132)
	eep (0.122564)