Ss1.1-Pig4-TMW8022G24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGCAGGTGTGTGCGGGCCACTGTGCCAACAACAGCACCTGCACCGTCAACCAGGGCAA CCAGCCCCAGTGCCGATGCCTCCCTGGCTTCCTGGGTGACCGCTGCCAGTACCGGCAGTG CTCTGGCTACTGTGAGAACTTTGGCACGTGCCAAATGGCTGCTGACGGCTCCCGGCAGTG CCGCTGCACCGCCTACTTCGAGGGGGCCAGGTGCGAGGTGAACAAGTGTAGCCGCTGTCT CGACGGGGCCTGTGTGGTCAACAAGCAGAGTGGGGACGTCACCTGCAACTGCTCTGATGG CCGGGTGGCCCCCAGCTGTCTGACCTGTGTTGGCCACTGCAGCAATGGCGGATCCTGCAC CATGAACAGCAAAATGATGCCTGAGTGCCAGTGCCCACCCCACATGGCAGGACCTCGGTG TGAAGAACAAGTAGTCAGCCCACAGCAGCCTGGACATATGGCCTCCATCCTAATCCCTCT GCTGTTGCTGCTACTAATGCTGCTGGTAGCCGGAGTGGTATTCTGGTACAAGCGGCGAGT CCGAGGGGCTAAAGGCTTCCAGCACCAGCGGATGACCAATGGGGCCATGAACGTGGAGAT TGGGAACCCCACCTACAAGATGTACGAAGGCGGGGAGCCTGATGATGTAGGGGGCCTACT GGATCCTGAATTTGCCCTGGACCCTGACAAGCCCACCAACTTCACCAACCCCGTGTACGC CACACTCTACATGGGTGGTCACGGTAGCCGCCACTCCCTGGCCAGCACGGACGAGAAGCG AGAACTCCTGGGCCGGGGCCCTGAGGACGAGATAGGGGACCCCTTGGCATAGGGTTCTGC GCAATCGGACTTCCCCAGAGAGCCTCCTGCCTGCCCTGCCAGAGAAGTCCTTCAACGAAC CCTCTCCTGCCCAGCCAACCCCTCCCCGGCCCCGCCGGGATGTATAAATGTAAAAATGAA GGAATTACTTTTTATATGTGAGCAAGCGAGCAAGCGAGCACAGTATTATCTCTTTCCGTT CTCCTTCCTGCCTGCTCCTCAGCAACCCCCCCCCATGCTGCCTTCCAGGAGGGGGGGCAG GGAGGGAGTTCTGCAACTTACAGGTACGAGGGGCCCCGCCTCCCACCTTCCCACCAAAAC TGCACCCCCACTGGGAGAGCTGGTGGTGCTGCTTCCCCCACCCCTGTACAAGACACTTTG TCAAGGCTCTCCCCTCTCATCCCCCCACCCCTGCCTCCAGCTCCCTAAGGGCTGATTCTG GGATTCTGGGGGGGATGAGCCCTTTGCTGCCCCTGTCTGGAAAATTTGGCTCTGGCTGAG GTAGGAAGAAAAGGATGGAGATTTTTAGTTCCCTGTCGGGGAAGCCATCCCATGCCCCTG CCCCTACTCTAGGGGCACCTCTGAGATGGCCAGGCTCAGTATCCCAGACAGGCCCTCCCC CTCCCCAGTGCCCCCACCATGGCTCCCAGGACTGGAGACTTTCTTTGGTAAAACAGTCCC CCAGGCTCCCCTCCCCTGGGGACTAGGAGGAAGTGGGGCACACCAAGGAAGGGCAAGCAA GCGGGCAGCCCCGTTTTGGGGATGTGAACGTTTTAATAATTTTTGCTGAATTCCTTTACA ACTAAATAACACAGATATTGTTATAAATAAAATTAAAAAAAAAAAAAAAAGAAAAAAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGCAGGTGTGTGCGGGCCACTGTGCCAACAACAGCACCTGCACCGTCAACCAGGGCAA CCAGCCCCAGTGCCGATGCCTCCCTGGCTTCCTGGGTGACCGCTGCCAGTACCGGCAGTG CTCTGGCTACTGTGAGAACTTTGGCACGTGCCAAATGGCTGCTGACGGCTCCCGGCAGTG CCGCTGCACCGCCTACTTCGAGGGGGCCAGGTGCGAGGTGAACAAGTGTAGCCGCTGTCT CGACGGGGCCTGTGTGGTCAACAAGCAGAGTGGGGACGTCACCTGCAACTGCTCTGATGG CCGGGTGGCCCCCAGCTGTCTGACCTGTGTTGGCCACTGCAGCAATGGCGGATCCTGCAC CATGAACAGCAAAATGATGCCTGAGTGCCAGTGCCCACCCCACATGGCAGGACCTCGGTG TGAAGAACAAGTAGTCAGCCCACAGCAGCCTGGACATATGGCCTCCATCCTAATCCCTCT GCTGTTGCTGCTACTAATGCTGCTGGTAGCCGGAGTGGTATTCTGGTACAAGCGGCGAGT CCGAGGGGCTAAAGGCTTCCAGCACCAGCGGATGACCAATGGGGCCATGAACGTGGAGAT TGGGAACCCCACCTACAAGATGTACGAAGGCGGGGAGCCTGATGATGTAGGGGGCCTACT GGATCCTGAATTTGCCCTGGACCCTGACAAGCCCACCAACTTCACCAACCCCGTGTACGC CACACTCTACATGGGTGGTCACGGTAGCCGCCACTCCCTGGCCAGCACGGACGAGAAGCG AGAACTCCTGGGCCGGGGCCCTGAGGACGAGATAGGGGACCCCTTGGCATAGGGTTCTGC GCAATCGGACTTCCCCAGAGAGCCTCCTGCCTGCCCTGCCAGAGAAGTCCTTCAACGAAC CCTCTCCTGCCCAGCCAACCCCTCCCCGGCCCCGCCGGGATGTATAAATGTAAAAATGAA GGAATTACTTTTTATATGTGAGCAAGCGAGCAAGCGAGCACAGTATTATCTCTTTCCGTT CTCCTTCCTGCCTGCTCCTCAGCAACCCCCCCCCATGCTGCCTTCCAGGAGGGGGGGCAG GGAGGGAGTTCTGCAACTTACAGGTACGAGGGGCCCCGCCTCCCACCTTCCCACCAAAAC TGCACCCCCACTGGGAGAGCTGGTGGTGCTGCTTCCCCCACCCCTGTACAAGACACTTTG TCAAGGCTCTCCCCTCTCATCCCCCCACCCCTGCCTCCAGCTCCCTAAGGGCTGATTCTG GGATTCTGGGGGGGATGAGCCCTTTGCTGCCCCTGTCTGGAAAATTTGGCTCTGGCTGAG GTAGGAAGAAAAGGATGGAGATTTTTAGTTCCCTGTCGGGGAAGCCATCCCATGCCCCTG CCCCTACTCTAGGGGCACCTCTGAGATGGCCAGGCTCAGTATCCCAGACAGGCCCTCCCC CTCCCCAGTGCCCCCACCATGGCTCCCAGGACTGGAGACTTTCTTTGGTAAAACAGTCCC CCAGGCTCCCCTCCCCTGGGGACTAGGAGGAAGTGGGGCACACCAAGGAAGGGCAAGCAA GCGGGCAGCCCCGTTTTGGGGATGTGAACGTTTTAATAATTTTTGCTGAATTCCTTTACA ACTAAATAACACAGATATTGTTATAAATAAAATTAAAAAAAAAAAAAAAAGAAAAAAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 546-664, + strand, RNAz p=0.921769 | |
| 986-1296, - strand, RNAz p=0.999993 | |
| 1337-1608, - strand, RNAz p=0.962959 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 546-664, + strand, RNAz p=0.921769 | |
| 986-1296, - strand, RNAz p=0.999993 | |
| 1337-1608, - strand, RNAz p=0.962959 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 116-291, gnl|bosTau2|chr5 (32477738-32477563) | |
| 116-291, gnl|canFam2|chr10 (4322534-4322718) | |
| 116-291, gnl|danRer3|chrUn (59592650-59592840) | |
| 116-291, gnl|fr1|chrUn (41086728-41086554) | |
| 116-291, gnl|hg17|chr12 (55891224-55891408) | |
| 116-291, gnl|Hg17|chr12 (55891228-55891403) | |
| 116-291, gnl|mm7|chr10 (127041719-127041535) | |
| 116-291, gnl|Mm7|chr10 (127041713-127041538) | |
| 116-291, gnl|monDom2|scaffold_299 (64118-64302) | |
| 116-291, gnl|oryCun1|scaffold_191903 (3787-3955) | |
| 116-291, gnl|panTro1|chr10 (57131274-57131433) | |
| 116-291, gnl|rheMac2|chr11 (54279279-54279463) | |
| 116-291, gnl|rn3|chr7 (67543452-67543268) | |
| 116-291, gnl|tetNig1|chr11 (6794756-6794947) | |
| 116-291, gnl|xenTro1|scaffold_957 (356793-356968) | |
| 546-691, gnl|bosTau2|chr5 (32476850-32476705) | |
| 546-691, gnl|canFam2|chr10 (4323413-4323562) | |
| 546-691, gnl|danRer3|chr23 (41293035-41292886) | |
| 546-691, gnl|dasNov1|scaffold_171721 (7265-7116) | |
| 546-691, gnl|fr1|chrUn (41085097-41084948) | |
| 546-691, gnl|hg17|chr12 (55892165-55892314) | |
| 546-691, gnl|Hg17|chr12 (55892166-55892311) | |
| 546-691, gnl|mm7|chr10 (127040769-127040620) | |
| 546-691, gnl|Mm7|chr10 (127040766-127040621) | |
| 546-691, gnl|monDom2|scaffold_299 (65145-65292) | |
| 546-691, gnl|panTro1|chr10 (57132216-57132365) | |
| 546-691, gnl|rheMac2|chr11 (54280218-54280367) | |
| 546-691, gnl|rn3|chr7 (67542507-67542358) | |
| 546-691, gnl|tetNig1|chr11 (6796335-6796484) | |
| 546-691, gnl|xenTro1|scaffold_957 (360781-360930) | |
| 906-1672, gnl|bosTau2|chr5 (32476547-32475771) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 116-291, gnl|bosTau2|chr5 (32477738-32477563) | |
| 116-291, gnl|canFam2|chr10 (4322534-4322718) | |
| 116-291, gnl|danRer3|chrUn (59592650-59592840) | |
| 116-291, gnl|fr1|chrUn (41086728-41086554) | |
| 116-291, gnl|hg17|chr12 (55891224-55891408) | |
| 116-291, gnl|Hg17|chr12 (55891228-55891403) | |
| 116-291, gnl|mm7|chr10 (127041719-127041535) | |
| 116-291, gnl|Mm7|chr10 (127041713-127041538) | |
| 116-291, gnl|monDom2|scaffold_299 (64118-64302) | |
| 116-291, gnl|oryCun1|scaffold_191903 (3787-3955) | |
| 116-291, gnl|panTro1|chr10 (57131274-57131433) | |
| 116-291, gnl|rheMac2|chr11 (54279279-54279463) | |
| 116-291, gnl|rn3|chr7 (67543452-67543268) | |
| 116-291, gnl|tetNig1|chr11 (6794756-6794947) | |
| 116-291, gnl|xenTro1|scaffold_957 (356793-356968) | |
| 546-691, gnl|bosTau2|chr5 (32476850-32476705) | |
| 546-691, gnl|canFam2|chr10 (4323413-4323562) | |
| 546-691, gnl|danRer3|chr23 (41293035-41292886) | |
| 546-691, gnl|dasNov1|scaffold_171721 (7265-7116) | |
| 546-691, gnl|fr1|chrUn (41085097-41084948) | |
| 546-691, gnl|hg17|chr12 (55892165-55892314) | |
| 546-691, gnl|Hg17|chr12 (55892166-55892311) | |
| 546-691, gnl|mm7|chr10 (127040769-127040620) | |
| 546-691, gnl|Mm7|chr10 (127040766-127040621) | |
| 546-691, gnl|monDom2|scaffold_299 (65145-65292) | |
| 546-691, gnl|panTro1|chr10 (57132216-57132365) | |
| 546-691, gnl|rheMac2|chr11 (54280218-54280367) | |
| 546-691, gnl|rn3|chr7 (67542507-67542358) | |
| 546-691, gnl|tetNig1|chr11 (6796335-6796484) | |
| 546-691, gnl|xenTro1|scaffold_957 (360781-360930) | |
| 906-1672, gnl|bosTau2|chr5 (32476547-32475771) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| hyp (0.42851) | |
| jca (0.34188) | |
| nco (0.323468) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| duo (0.172801) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.42851) | |
| jca (0.34188) | |
| nco (0.323468) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| duo (0.172801) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |