Non-Coding RNA Search

Ss1.1-Pig4-TMW8022H03.3

Sequence:


               
               TGACATCTCACAGGTCTTGCCTTTAAATTACCCCTCCCTGTGCCGTGCGCACGCGCGCAC
ATGCACACGCACACACGCACACACGCACACACACACACACACAGGTAGAACATAATCTAA
CAATCTTTTAGAAAGCTTAAAACGTGTAGTAAATGATTGGGGGGAATAATGATCCTTATT
AATGACGAGGGAACCGTGATTAAACGACAGTGGCATGTCGAAAGTGTCATTTTAAACATT
AGTAGCCTCGGTACATGTTGCTGGATTACCTCTCTTAAAACACGCCACTCTTCCTCGCCT
GTTGGTGCTGGCCCTCGGGAGCTGGAGCCAGCCCGGCGGGGAGTCGCCACCTCCACGTCG
TCACCCCCACGCGGCCCACTCCCTCGGGGCTGCTTTCCGAGCTCGGCCCAGACCGCCCGT
CCCCGGGGACTGGCGGACAGAGTCGGGACCCGACGAGGATGGCGCTGTGGCAGCATCGGC
GGTGCCCTTCAGAGCGGGCGGTGTGTGTGCGCGCGCGGCCTGGTCGACCCAGTGCTCTGG
AAGTAAGCCCGTGCTCCGTCCTCTCGAGGGACCAAGCTAGAACCCCGCCGGGTCATGTAG
CGAGACTGAATTGTGCTTCAGAGATGCCGAACGCATATTTAACTTATTTAACGTGTTTCA
TCTCATGTGTCCCTGTCACAAGATTGTAATCAATGCTGTGGCCTAAAAGTCACCTGTGCT
CCTGACACTGCCGGGTGAGGCTGCACTGCGGCTGCTGGGGGCGGTGGGCTCTGCACACAC
GGAGGCGTGGCTGCTCTCGGAAAACAGGCTGGAGAACAGCCACCAGGAAGTGCTTTTCTG
TGTAAATAAACAACAGCTGTCACAGGGAGGGCCCCTCTCGGGAGCGGCTGTCGACTCCCC
ATCACTCTCCATGGAGAAGCGTGGCCCTCACCCCCACTCACCCTGCAGCACACACGCCCC
CCGGGGTGGGCCCGGCCCTGACCTGCCCACGCGGCCCTCGCTTGGGGTCAGGCAGCAGGG
ACTCAGGAGAGAGGGAGCCGGCGGGGTGGGGTGTGGAGGGGAGGGCGAAAGAGACGTCAG
ATCATCCATCAAGTTGTGATCGAGAGTTTGACTGTGAAATTAATTTTATGCCGTAAAAGA
CCAATCCAATTCTGTTTGACTATGTAGCATCTTAAAAAGTAAAAAAATTAAAATAAAGCC
CCAAAATTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACATCTCACAGGTCTTGCCTTTAAATTACCCCTCCCTGTGCCGTGCGCACGCGCGCAC
ATGCACACGCACACACGCACACACGCACACACACACACACACAGGTAGAACATAATCTAA
CAATCTTTTAGAAAGCTTAAAACGTGTAGTAAATGATTGGGGGGAATAATGATCCTTATT
AATGACGAGGGAACCGTGATTAAACGACAGTGGCATGTCGAAAGTGTCATTTTAAACATT
AGTAGCCTCGGTACATGTTGCTGGATTACCTCTCTTAAAACACGCCACTCTTCCTCGCCT
GTTGGTGCTGGCCCTCGGGAGCTGGAGCCAGCCCGGCGGGGAGTCGCCACCTCCACGTCG
TCACCCCCACGCGGCCCACTCCCTCGGGGCTGCTTTCCGAGCTCGGCCCAGACCGCCCGT
CCCCGGGGACTGGCGGACAGAGTCGGGACCCGACGAGGATGGCGCTGTGGCAGCATCGGC
GGTGCCCTTCAGAGCGGGCGGTGTGTGTGCGCGCGCGGCCTGGTCGACCCAGTGCTCTGG
AAGTAAGCCCGTGCTCCGTCCTCTCGAGGGACCAAGCTAGAACCCCGCCGGGTCATGTAG
CGAGACTGAATTGTGCTTCAGAGATGCCGAACGCATATTTAACTTATTTAACGTGTTTCA
TCTCATGTGTCCCTGTCACAAGATTGTAATCAATGCTGTGGCCTAAAAGTCACCTGTGCT
CCTGACACTGCCGGGTGAGGCTGCACTGCGGCTGCTGGGGGCGGTGGGCTCTGCACACAC
GGAGGCGTGGCTGCTCTCGGAAAACAGGCTGGAGAACAGCCACCAGGAAGTGCTTTTCTG
TGTAAATAAACAACAGCTGTCACAGGGAGGGCCCCTCTCGGGAGCGGCTGTCGACTCCCC
ATCACTCTCCATGGAGAAGCGTGGCCCTCACCCCCACTCACCCTGCAGCACACACGCCCC
CCGGGGTGGGCCCGGCCCTGACCTGCCCACGCGGCCCTCGCTTGGGGTCAGGCAGCAGGG
ACTCAGGAGAGAGGGAGCCGGCGGGGTGGGGTGTGGAGGGGAGGGCGAAAGAGACGTCAG
ATCATCCATCAAGTTGTGATCGAGAGTTTGACTGTGAAATTAATTTTATGCCGTAAAAGA
CCAATCCAATTCTGTTTGACTATGTAGCATCTTAAAAAGTAAAAAAATTAAAATAAAGCC
CCAAAATTAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               82-926, gnl|bosTau2|chr13 (39241655-39240808)
               

               
               82-926, gnl|Hg17|chr20 (56452846-56453693)
               

               
               82-926, gnl|Mm7|chr2 (173522755-173523488)
               


               
               1004-1210, gnl|bosTau2|chr13 (39240682-39240477)
               

               
               1004-1210, gnl|Hg17|chr20 (56453823-56454011)
               

               
               1004-1210, gnl|Mm7|chr2 (173523578-173523749)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-926, gnl|bosTau2|chr13 (39241655-39240808)
               

               
               82-926, gnl|Hg17|chr20 (56452846-56453693)
               

               
               82-926, gnl|Mm7|chr2 (173522755-173523488)
               


               
               1004-1210, gnl|bosTau2|chr13 (39240682-39240477)
               

               
               1004-1210, gnl|Hg17|chr20 (56453823-56454011)
               

               
               1004-1210, gnl|Mm7|chr2 (173523578-173523749)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

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               mcp (0.341297)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               nms (0.213858)
               

               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               nms (0.213858)
               

               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	82-926, gnl\|bosTau2\|chr13 (39241655-39240808)
	82-926, gnl\|Hg17\|chr20 (56452846-56453693)
	82-926, gnl\|Mm7\|chr2 (173522755-173523488)

	1004-1210, gnl\|bosTau2\|chr13 (39240682-39240477)
	1004-1210, gnl\|Hg17\|chr20 (56453823-56454011)
	1004-1210, gnl\|Mm7\|chr2 (173523578-173523749)

	mcp (0.341297)
	hyp (0.285673)
	lnt (0.284616)
	nms (0.213858)
	fli (0.202881)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	nje (0.16592)
	cli (0.152812)
	pty (0.142714)
	nca (0.136874)
	nmm (0.132802)
	ese (0.126502)
	cly (0.120642)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)