Non-Coding RNA Search

Ss1.1-Pig4-TMW8022H06.3

Sequence:


               
               TAGCCACACTTAGCCATTTGCTAGCACGACAGAAAAGGCCGGGCGCCCTGGGGTCCAACG
GAGAGGACCTTGCTGGCTGCACGAGCCCAAGGGGGACCCTCACCAGCCCTATGGCCCCTG
AGGCCGAGGCTGGAAGCTTACCAGGAACACGTGGAAGAGCAAAACCTGGAGCGGCAGGTG
TTACAGACGCAGTGCCGGCGGCTGGAGGCCCAGCACTACAGCCTCAGCCTCGCGGCTGAG
CAGCTTTCCCACAGCATGGCGGAGCTGAGGAGCCAGAAACAGAAGATTGTTTCAGAAAGG
GAGCGCCTCCAGGCCGAACTGGATCACTTACGGAAGTGCCTTGCGTTGCCGGCCATGCAC
TGGCCCCGGGGTTACTTGAAGGGGTACCCCAGGTGACGCTCCGTCGCACGAGGCCGAACC
TAGAGTAGAGAAATAGTATCTATTTTATTACCTTGAATATTTAATATTTTTCACTGGGAG
GTTTGAAGCTTAAAACAATGAGAATGTGCCATGCATGAAGCAAAGGATTCCAGGCCCCAG
AAAAAGAACGGACTCGCCTCGGCTTCCAATGCCATTCAGTCGTCTTGGTCATCAGCCAGC
AGCCACGTAGACGCCCCTAGTTTTTCTTTCTGGAGGTGGTTTTAGTCTTTCCCCACGTCA
TCGTTGTTCAGCTGAAAGCGGACGCTCCGTCACCAACACTAACACGTGGTCCTCTCTCGC
CCCTGGGGTTGTGTGTTCCGGAGTCTGGAGCAGGAGCGGCCGCTCGGCTCCCGCTGCGGT
GGGCGCGGGTCTCGGTCCTCGGGGCCGGAGGGAGGCCTGCTCCAGCTCCCGGAAGGTGGG
GTGCGTTTTAAGTTAAAGGGCTTATTTGTTTCAGTTACTTTTCCGGAAAATTCCCTTCCA
AGCACCAGGTCCTAGGAGCACACAAAGCAGCCGTACTGAAGCCTCAGCCCAAGGCTTTTC
CCCGGAAAAGCTCTCACCTAGAGAGAAAGCCCATCAGCCAACGGAAGGTACCTTTTTGTC
ACTCCACGGGCACACGCGCAGAGCTCTGTGCGTGCGTTGAGTCACAGCCACGGATCGTTC
CTGCCGTGGGGGGTGTTTTCATACAAACGTCAATTTTGAGAGAATAGTCAAAGGTGCTTC
AGCCTTGTACTGTGTATATATATTAAAAAACAAAGTTTTGTATGTTTTTATTACTTTAAT
TATTGTTATAAAAAGCCTGCCATTTTTAATATGTGGTTTGGGGGGATTTTTGTTGTTTTC
CTGTTTGGGGGTTTTGTTTGTTTTTTGTTTTGTTTTTCTGGGCAAAAAAGAAAAAAAAAA
CCCTTGCTTTTAGTGTTTGTACTGCTGCTGGTCAGGACATTAAAATACTGAAGTGTTTTT
AAAAATTAAAAAAGAAGAAAAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGCCACACTTAGCCATTTGCTAGCACGACAGAAAAGGCCGGGCGCCCTGGGGTCCAACG
GAGAGGACCTTGCTGGCTGCACGAGCCCAAGGGGGACCCTCACCAGCCCTATGGCCCCTG
AGGCCGAGGCTGGAAGCTTACCAGGAACACGTGGAAGAGCAAAACCTGGAGCGGCAGGTG
TTACAGACGCAGTGCCGGCGGCTGGAGGCCCAGCACTACAGCCTCAGCCTCGCGGCTGAG
CAGCTTTCCCACAGCATGGCGGAGCTGAGGAGCCAGAAACAGAAGATTGTTTCAGAAAGG
GAGCGCCTCCAGGCCGAACTGGATCACTTACGGAAGTGCCTTGCGTTGCCGGCCATGCAC
TGGCCCCGGGGTTACTTGAAGGGGTACCCCAGGTGACGCTCCGTCGCACGAGGCCGAACC
TAGAGTAGAGAAATAGTATCTATTTTATTACCTTGAATATTTAATATTTTTCACTGGGAG
GTTTGAAGCTTAAAACAATGAGAATGTGCCATGCATGAAGCAAAGGATTCCAGGCCCCAG
AAAAAGAACGGACTCGCCTCGGCTTCCAATGCCATTCAGTCGTCTTGGTCATCAGCCAGC
AGCCACGTAGACGCCCCTAGTTTTTCTTTCTGGAGGTGGTTTTAGTCTTTCCCCACGTCA
TCGTTGTTCAGCTGAAAGCGGACGCTCCGTCACCAACACTAACACGTGGTCCTCTCTCGC
CCCTGGGGTTGTGTGTTCCGGAGTCTGGAGCAGGAGCGGCCGCTCGGCTCCCGCTGCGGT
GGGCGCGGGTCTCGGTCCTCGGGGCCGGAGGGAGGCCTGCTCCAGCTCCCGGAAGGTGGG
GTGCGTTTTAAGTTAAAGGGCTTATTTGTTTCAGTTACTTTTCCGGAAAATTCCCTTCCA
AGCACCAGGTCCTAGGAGCACACAAAGCAGCCGTACTGAAGCCTCAGCCCAAGGCTTTTC
CCCGGAAAAGCTCTCACCTAGAGAGAAAGCCCATCAGCCAACGGAAGGTACCTTTTTGTC
ACTCCACGGGCACACGCGCAGAGCTCTGTGCGTGCGTTGAGTCACAGCCACGGATCGTTC
CTGCCGTGGGGGGTGTTTTCATACAAACGTCAATTTTGAGAGAATAGTCAAAGGTGCTTC
AGCCTTGTACTGTGTATATATATTAAAAAACAAAGTTTTGTATGTTTTTATTACTTTAAT
TATTGTTATAAAAAGCCTGCCATTTTTAATATGTGGTTTGGGGGGATTTTTGTTGTTTTC
CTGTTTGGGGGTTTTGTTTGTTTTTTGTTTTGTTTTTCTGGGCAAAAAAGAAAAAAAAAA
CCCTTGCTTTTAGTGTTTGTACTGCTGCTGGTCAGGACATTAAAATACTGAAGTGTTTTT
AAAAATTAAAAAAGAAGAAAAGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|39644679|gb|AAH09854.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|39644679|gb|AAH09854.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               300-497, + strand, RNAz p=0.69032
               

               
               873-1020, - strand, RNAz p=0.82512

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               300-497, + strand, RNAz p=0.69032
               

               
               873-1020, - strand, RNAz p=0.82512

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014615, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014615, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               261-736, gnl|bosTau2|chr18 (7932511-7932999)
               

               
               261-736, gnl|Hg17|chr16 (84263511-84263995)
               

               
               261-736, gnl|Mm7|chr8 (119213442-119213866)
               


               
               760-1404, gnl|bosTau2|chr18 (7933054-7933689)
               

               
               760-1404, gnl|Hg17|chr16 (84264049-84264683)
               

               
               760-1404, gnl|Mm7|chr8 (119213912-119214490)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               261-736, gnl|bosTau2|chr18 (7932511-7932999)
               

               
               261-736, gnl|Hg17|chr16 (84263511-84263995)
               

               
               261-736, gnl|Mm7|chr8 (119213442-119213866)
               


               
               760-1404, gnl|bosTau2|chr18 (7933054-7933689)
               

               
               760-1404, gnl|Hg17|chr16 (84264049-84264683)
               

               
               760-1404, gnl|Mm7|chr8 (119213912-119214490)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               pro (0.512033)
               

               
               pla (0.401016)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               pla (0.401016)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	300-497, + strand, RNAz p=0.69032
	873-1020, - strand, RNAz p=0.82512

	261-736, gnl\|bosTau2\|chr18 (7932511-7932999)
	261-736, gnl\|Hg17\|chr16 (84263511-84263995)
	261-736, gnl\|Mm7\|chr8 (119213442-119213866)

	760-1404, gnl\|bosTau2\|chr18 (7933054-7933689)
	760-1404, gnl\|Hg17\|chr16 (84264049-84264683)
	760-1404, gnl\|Mm7\|chr8 (119213912-119214490)

	pro (0.512033)
	pla (0.401016)
	jca (0.22792)
	fcc (0.197785)
	nlu (0.191681)
	fty (0.17584)
	fat (0.147427)
	spl (0.143184)
	pty (0.142714)
	ste (0.135208)
	thg (0.126791)
	cly (0.120642)
	pgl (0.118483)
	eje (0.0988338)