Non-Coding RNA Search

Ss1.1-Pig4-TMW8022H07.3

Sequence:


               
               TGAGTGTCCAGGTTTTTTCATGTGTTGTTGCTTTTATTTTGGGGGGTGGGGGATGGGCGA
GACGGGGGAGTAGGTAGCGCTGAGAAGACAGCATCTTAGTGGGGAGCCTTAGCCACGTGG
GTGAACTGACAAAGGCATTGTCTCTTGTCCCAGGCCAAAGAGCAGCCACTGCCTCGGTCC
CCCCCTTAGGACTAGCCCATTCCCTGTATCCTTCCTACCAAATGCCAGCTCATAAAACTA
GGAGAGTGTGGCCCATCCCTGTAAAAGGAGTTCCCAGCAGTCTGCAGAAAGCATCAAATG
CTGCAAGTCTCTTCGAGCTTGAGATGGCCATCACGGTCCCAGCCAGTTCCACAGGAGGCT
GAAAGCCACAGAGCGGTTGTTTGTGTTAGTGTTCAATCTTCGGGTGTAAGAGTAATCCTC
TATTTTTATATTGAAACATGATTACTTGATAGCTCAGGGTCTACACTTCACTCAACTTTT
GACACCAAATTCTGCAGAATGGACAAAATGGAATATCGGGGGCTGTTGTAAACAGAGGCT
TAATTTTATTAGAAGTAGCCAGTTATTTATTAAAGCATGGTGTTAATAAAATAGGCATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGTGTCCAGGTTTTTTCATGTGTTGTTGCTTTTATTTTGGGGGGTGGGGGATGGGCGA
GACGGGGGAGTAGGTAGCGCTGAGAAGACAGCATCTTAGTGGGGAGCCTTAGCCACGTGG
GTGAACTGACAAAGGCATTGTCTCTTGTCCCAGGCCAAAGAGCAGCCACTGCCTCGGTCC
CCCCCTTAGGACTAGCCCATTCCCTGTATCCTTCCTACCAAATGCCAGCTCATAAAACTA
GGAGAGTGTGGCCCATCCCTGTAAAAGGAGTTCCCAGCAGTCTGCAGAAAGCATCAAATG
CTGCAAGTCTCTTCGAGCTTGAGATGGCCATCACGGTCCCAGCCAGTTCCACAGGAGGCT
GAAAGCCACAGAGCGGTTGTTTGTGTTAGTGTTCAATCTTCGGGTGTAAGAGTAATCCTC
TATTTTTATATTGAAACATGATTACTTGATAGCTCAGGGTCTACACTTCACTCAACTTTT
GACACCAAATTCTGCAGAATGGACAAAATGGAATATCGGGGGCTGTTGTAAACAGAGGCT
TAATTTTATTAGAAGTAGCCAGTTATTTATTAAAGCATGGTGTTAATAAAATAGGCATGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-598, gnl|bosTau2|chrX (5035998-5036576)
               

               
               1-598, gnl|Hg17|chrX (132161155-132160588)
               

               
               1-598, gnl|Mm7|chrX (47144173-47143630)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-598, gnl|bosTau2|chrX (5035998-5036576)
               

               
               1-598, gnl|Hg17|chrX (132161155-132160588)
               

               
               1-598, gnl|Mm7|chrX (47144173-47143630)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nep (0.183925)
               

               
               cki (0.165235)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               cki (0.165235)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)

	1-598, gnl\|bosTau2\|chrX (5035998-5036576)
	1-598, gnl\|Hg17\|chrX (132161155-132160588)
	1-598, gnl\|Mm7\|chrX (47144173-47143630)