Non-Coding RNA Search

Ss1.1-Pig4-TMW8022I18.3

Sequence:


               
               CATGACTGATGCCTGCCTGAGGGGTCGTTTCCCATAGCCTGAGGCCTCCCTCCTCCCGGA
TGACCACACTGGATCGTGTTAGCAGCTCAGTTTTTCGTGGCCTTGGGGCAGCTTCCCTGA
TGTGGGGACTTGAAAATGGGCCTCTTATGAGCACCCAGGGAGAGAGGAAGCAGGGGGAGA
GCTGAGGTTTTTGCATCAGCCCATTCATTCAAGGGGAGGGTGCCGTAGGGGTCCTTTTTT
TCGTGGTTTGGGGACTCGTGGTGTAATCAGATGAATTGATTCAGGGTGTGGGGGAAAGTG
GGGAAGGGCGGTCCTTGAAGTGACCTAATCTCATGGAATCTCTGACACTGTCAGCTGCTG
GATGCAGGGTTGTGTCCTGAGACATCTCGAGAGGAGAGATACAGCTGCCAACCACACTTG
TGATCCCCCAGTGGCTGTAAGAGGCCCCCTTCCTTCATGGGGAGGGGTGTCTTTAAATTG
CTGAAATGTGGAAGCAGCCCCTGCACTCCCCAAAGCTTATTAACCCCTTAACCGTCTCCC
AGGGTACATGTGGTATGTGTGCGTGTGTGCGTGCGTGTGTGTGTGTGTGTGCGCGCGCGC
GCACGCACGCGCGTGCACCTAGTGCACACTTGCGCTTGGGAGATGCCTGGGCTGTCTCTG
CTATATGTACATAGGGCCGTTGGATCTTTATTTTTGATTAATTTGTTCTGATTTTTTTTT
TTTTTGGTTTGTTTTCTAAGGAACTGTAATGAACAAATGTCAGGATACCCAATGCCAAAT
AAAGATGTTGTATTTATTTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGACTGATGCCTGCCTGAGGGGTCGTTTCCCATAGCCTGAGGCCTCCCTCCTCCCGGA
TGACCACACTGGATCGTGTTAGCAGCTCAGTTTTTCGTGGCCTTGGGGCAGCTTCCCTGA
TGTGGGGACTTGAAAATGGGCCTCTTATGAGCACCCAGGGAGAGAGGAAGCAGGGGGAGA
GCTGAGGTTTTTGCATCAGCCCATTCATTCAAGGGGAGGGTGCCGTAGGGGTCCTTTTTT
TCGTGGTTTGGGGACTCGTGGTGTAATCAGATGAATTGATTCAGGGTGTGGGGGAAAGTG
GGGAAGGGCGGTCCTTGAAGTGACCTAATCTCATGGAATCTCTGACACTGTCAGCTGCTG
GATGCAGGGTTGTGTCCTGAGACATCTCGAGAGGAGAGATACAGCTGCCAACCACACTTG
TGATCCCCCAGTGGCTGTAAGAGGCCCCCTTCCTTCATGGGGAGGGGTGTCTTTAAATTG
CTGAAATGTGGAAGCAGCCCCTGCACTCCCCAAAGCTTATTAACCCCTTAACCGTCTCCC
AGGGTACATGTGGTATGTGTGCGTGTGTGCGTGCGTGTGTGTGTGTGTGTGCGCGCGCGC
GCACGCACGCGCGTGCACCTAGTGCACACTTGCGCTTGGGAGATGCCTGGGCTGTCTCTG
CTATATGTACATAGGGCCGTTGGATCTTTATTTTTGATTAATTTGTTCTGATTTTTTTTT
TTTTTGGTTTGTTTTCTAAGGAACTGTAATGAACAAATGTCAGGATACCCAATGCCAAAT
AAAGATGTTGTATTTATTTAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96HM8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96HM8_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-592, gnl|bosTau2|chrX (26215709-26216300)
               

               
               3-592, gnl|Hg17|chrX (48517832-48517296)
               

               
               3-592, gnl|Mm7|chrX (6326415-6326996)
               


               
               629-794, gnl|bosTau2|chrX (35393120-35393277)
               

               
               629-794, gnl|Hg17|chrX (48517291-48517144)
               

               
               629-794, gnl|Mm7|chrX (6326998-6327171)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-592, gnl|bosTau2|chrX (26215709-26216300)
               

               
               3-592, gnl|Hg17|chrX (48517832-48517296)
               

               
               3-592, gnl|Mm7|chrX (6326415-6326996)
               


               
               629-794, gnl|bosTau2|chrX (35393120-35393277)
               

               
               629-794, gnl|Hg17|chrX (48517291-48517144)
               

               
               629-794, gnl|Mm7|chrX (6326998-6327171)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nmm (0.265604)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               pty (0.142714)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               pty (0.142714)

	3-592, gnl\|bosTau2\|chrX (26215709-26216300)
	3-592, gnl\|Hg17\|chrX (48517832-48517296)
	3-592, gnl\|Mm7\|chrX (6326415-6326996)

	629-794, gnl\|bosTau2\|chrX (35393120-35393277)
	629-794, gnl\|Hg17\|chrX (48517291-48517144)
	629-794, gnl\|Mm7\|chrX (6326998-6327171)