Ss1.1-Pig4-TMW8022J01.3
|
GGCTCTGGGCAGGGAAGAGGAGTCGCATGTGTCGCTTCAGCTGGCGGTAGTGGCGGGAGC
GGAGGCGGCGGAGGCTGTGCGACCGCCTGGGTTTGTGAAATGGCTGCTGACATTTCTGAA
TCTGGTGGGCATGATTGCAAAGGAGACCTGAAGAGCAATACCAAGTTAGATGCAGATTAC
CCACTTCGAGTCCTTTACTGCGGAGTCTGTTCATTACCAACAGAGTACTGTGAATATATG
CCTGATGTTGCTAAATGTAGACAGTGGTTAGAGAAGAATTTTCCAAATGAGTTTGCAAAA
CTTACTGTAGAAAATTCACCCAAACAAGAAGCTGGAATTACTGAGGGTCAAGGTACAGCA
GGGGAAGAAGAAGAGAAGAAAAAGCAAAAGAGAGGTGGAAGGGGTCAAATAAAACAAAAA
AAGAAGACTGTACCACAAAAAGTTACGATAGCCAAAATTCCAAGAGCAAAGAAGAAATAC
GTAACAAGAGTGTGTGGCCTTGCAACTTTTGAAATTGATCTTAAAGAAGCACAAAGATTT
TTTGCTCAGAAATTCTCCTGTGGTGCCTCAGTAACAGGGGAGGATGAAATCATCATTCAG
GGAGACTTTACAGATGACATAATTGATGTCATTCAGGAAAAATGGCCAGAGGTGGATGAT
GATAGCATTGAAGATCTTGGCGAAGTGAAGAAGTGATTTTGAAAATTTGTATTTAATGAT
CTGAACTGATTGTTGAATGGCCAAAGGGAGAGAGGACTTTTAAAAATATATATATTTATC
CTACAGTAAAACTGTAGCCTGCCCTCACCCTTGGCATTTTCACTGTTCTATACAAGGCTG
CTTGTTTTTTTTTTATTGCCAAAGTCTAATAAACAGGGGAGACTGTCATGCTTATGCATG
AAATAGAATTTAGTTAAATAAAAATTTTTGGTCATTTGGTACTGACTTTTCTCTTTCTTT
TTAACTTTATTTTTGGGAAAACACTGTAGACTTTCTGTGGAAAGCTTTTCTATTGATTAT
TTTTAAATAATCATGATTTAATTAAATCATGGTTTTGTTTGTTTTTCAGAGCTGAGTAAT
ATTTTAAAGAATTTGAATTTGGCTTCATCACCAGTAATAACTGTCTCCTTGCTTCTTTGG
TGTGATAGCTTTGAGATGCTTGAGCATCTCAGAGATCTGTGGTTGAATTTGCTTCATTTC
CAACCAAGTTCACTTTGTGGGCATATTAACATATTGTTGGGTAACAGTTGTTCAAGCTAT
TCTGGAGATTATTTGGTAAAGTATATTAAAAGCCTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCTCTGGGCAGGGAAGAGGAGTCGCATGTGTCGCTTCAGCTGGCGGTAGTGGCGGGAGC
GGAGGCGGCGGAGGCTGTGCGACCGCCTGGGTTTGTGAAATGGCTGCTGACATTTCTGAA
TCTGGTGGGCATGATTGCAAAGGAGACCTGAAGAGCAATACCAAGTTAGATGCAGATTAC
CCACTTCGAGTCCTTTACTGCGGAGTCTGTTCATTACCAACAGAGTACTGTGAATATATG
CCTGATGTTGCTAAATGTAGACAGTGGTTAGAGAAGAATTTTCCAAATGAGTTTGCAAAA
CTTACTGTAGAAAATTCACCCAAACAAGAAGCTGGAATTACTGAGGGTCAAGGTACAGCA
GGGGAAGAAGAAGAGAAGAAAAAGCAAAAGAGAGGTGGAAGGGGTCAAATAAAACAAAAA
AAGAAGACTGTACCACAAAAAGTTACGATAGCCAAAATTCCAAGAGCAAAGAAGAAATAC
GTAACAAGAGTGTGTGGCCTTGCAACTTTTGAAATTGATCTTAAAGAAGCACAAAGATTT
TTTGCTCAGAAATTCTCCTGTGGTGCCTCAGTAACAGGGGAGGATGAAATCATCATTCAG
GGAGACTTTACAGATGACATAATTGATGTCATTCAGGAAAAATGGCCAGAGGTGGATGAT
GATAGCATTGAAGATCTTGGCGAAGTGAAGAAGTGATTTTGAAAATTTGTATTTAATGAT
CTGAACTGATTGTTGAATGGCCAAAGGGAGAGAGGACTTTTAAAAATATATATATTTATC
CTACAGTAAAACTGTAGCCTGCCCTCACCCTTGGCATTTTCACTGTTCTATACAAGGCTG
CTTGTTTTTTTTTTATTGCCAAAGTCTAATAAACAGGGGAGACTGTCATGCTTATGCATG
AAATAGAATTTAGTTAAATAAAAATTTTTGGTCATTTGGTACTGACTTTTCTCTTTCTTT
TTAACTTTATTTTTGGGAAAACACTGTAGACTTTCTGTGGAAAGCTTTTCTATTGATTAT
TTTTAAATAATCATGATTTAATTAAATCATGGTTTTGTTTGTTTTTCAGAGCTGAGTAAT
ATTTTAAAGAATTTGAATTTGGCTTCATCACCAGTAATAACTGTCTCCTTGCTTCTTTGG
TGTGATAGCTTTGAGATGCTTGAGCATCTCAGAGATCTGTGGTTGAATTTGCTTCATTTC
CAACCAAGTTCACTTTGTGGGCATATTAACATATTGTTGGGTAACAGTTGTTCAAGCTAT
TCTGGAGATTATTTGGTAAAGTATATTAAAAGCCTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
90-205, gnl|bosTau2|chr17 (27711813-27711699) |
|
90-205, gnl|canFam2|chr26 (9731022-9730897) |
|
90-205, gnl|dasNov1|scaffold_92438 (2855-2740) |
|
90-205, gnl|echTel1|scaffold_160108 (5648-5777) |
|
90-205, gnl|galGal2|chr15 (5230182-5230057) |
|
90-205, gnl|hg17|chr12 (121763120-121763245) |
|
90-205, gnl|Hg17|chr12 (121763119-121763234) |
|
90-205, gnl|mm7|chr5 (123153944-123154069) |
|
90-205, gnl|Mm7|chr5 (123153943-123154058) |
|
90-205, gnl|oryCun1|scaffold_16810 (2659-2782) |
|
90-205, gnl|panTro1|chr10 (124837320-124837445) |
|
90-205, gnl|rheMac2|chr11 (124004348-124004473) |
|
90-205, gnl|rn3|chr12 (33682356-33682243) |
| |
|
387-511, gnl|bosTau2|chr17 (27702551-27702427) |
|
387-511, gnl|Hg17|chr12 (121776907-121777031) |
|
387-511, gnl|Mm7|chr5 (123170571-123170691) |
| |
|
650-1296, gnl|bosTau2|chr17 (27701448-27700791) |
|
650-1296, gnl|Hg17|chr12 (121778459-121779550) |
|
650-1296, gnl|Mm7|chr5 (123173092-123173786) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
90-205, gnl|bosTau2|chr17 (27711813-27711699) |
|
90-205, gnl|canFam2|chr26 (9731022-9730897) |
|
90-205, gnl|dasNov1|scaffold_92438 (2855-2740) |
|
90-205, gnl|echTel1|scaffold_160108 (5648-5777) |
|
90-205, gnl|galGal2|chr15 (5230182-5230057) |
|
90-205, gnl|hg17|chr12 (121763120-121763245) |
|
90-205, gnl|Hg17|chr12 (121763119-121763234) |
|
90-205, gnl|mm7|chr5 (123153944-123154069) |
|
90-205, gnl|Mm7|chr5 (123153943-123154058) |
|
90-205, gnl|oryCun1|scaffold_16810 (2659-2782) |
|
90-205, gnl|panTro1|chr10 (124837320-124837445) |
|
90-205, gnl|rheMac2|chr11 (124004348-124004473) |
|
90-205, gnl|rn3|chr12 (33682356-33682243) |
| |
|
387-511, gnl|bosTau2|chr17 (27702551-27702427) |
|
387-511, gnl|Hg17|chr12 (121776907-121777031) |
|
387-511, gnl|Mm7|chr5 (123170571-123170691) |
| |
|
650-1296, gnl|bosTau2|chr17 (27701448-27700791) |
|
650-1296, gnl|Hg17|chr12 (121778459-121779550) |
|
650-1296, gnl|Mm7|chr5 (123173092-123173786) |
|
bla (0.621736) |
|
mgp (0.461361) |
|
ova (0.387397) |
|
thg (0.380373) |
|
clu (0.358938) |
|
gul (0.355177) |
|
liv (0.292569) |
|
fce (0.271592) |
|
eep (0.245128) |
|
nms (0.213858) |
|
mas (0.210305) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
col (0.195008) |
|
ldo (0.194005) |
|
mgm (0.180343) |
|
sin (0.174948) |
|
cki (0.165235) |
|
nco (0.161734) |
|
mga (0.160205) |
|
tbr (0.154178) |
|
eli (0.151814) |
|
lin (0.145603) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
sug (0.127291) |
|
ebs (0.118301) |
|
bla (0.621736) |
|
mgp (0.461361) |
|
ova (0.387397) |
|
thg (0.380373) |
|
clu (0.358938) |
|
gul (0.355177) |
|
liv (0.292569) |
|
fce (0.271592) |
|
eep (0.245128) |
|
nms (0.213858) |
|
mas (0.210305) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
col (0.195008) |
|
ldo (0.194005) |
|
mgm (0.180343) |
|
sin (0.174948) |
|
cki (0.165235) |
|
nco (0.161734) |
|
mga (0.160205) |
|
tbr (0.154178) |
|
eli (0.151814) |
|
lin (0.145603) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
sug (0.127291) |
|
ebs (0.118301) |
