Non-Coding RNA Search

Ss1.1-Pig4-TMW8022J05.3

Sequence:


               
               TCATAGTCCTTTAAGTGTTCCAAGGGATTTGAAATTCCTGGCTTTGCCTATTATCATGGT
TGTTGCCTTTTCCATGTGCATTATCTGTTTGCTTATGGCTGGTGACACCTGGACAGAAAC
ACTGGCCTATGTGCTCTTCTGGGGAGTTGCAAGCATTGGAACATTTTTTATCATTCTTTA
CAATGGCAAAGATTTTGTCGATGCTCCCAGATTGGTCCAAAAAGAAAAGATAGACTGAAT
TTGTGTTTGTGGAAAGCGGCTTGGCTTGGAAGATTCCATTATGCAGAACTGGAGTCTTTA
CTGACCCGCTTTCCACATCAGCCTGAGATCTTTTTAAATCCTTTATCCGAGAGCACATCT
TGTGCTTTGTGTGGGGGTGATGACTTAGAACTGATCAGATGTTACTGCCTTGATGATCTC
TTTACTATTGGGTTGGTTATATTTATAATTTGAAGCTGTTCTGTAATTAAAATGTAACCT
GAATTCAGCTCACACAATGGAGGGAATCTATTCATTGTCAGTCTAATCAACTGTTGCAGA
ATAATATATTTAAAAAATTTAGCTTCTTTCATTATTTAAAACAGTAAAATTATTTTTCTA
GCTCAGTTTATTGTCATTGTCGGAGTAGTTGCAGTTAGCAGACATAAACTTTTCCATCCA
TCTTTGGACTTTGCTTAAAGGTTTAAAGATAAGCTAACTCTACTCTGTTTATAAATTGTA
AGTCTTTTACATACATCAAGCAGGTAGTCACAGTAGTCTGTGACTGCATGGTAGGAACGA
GGAGACCGGGGTCTGGTGTTCCTTTGGAGCGTCAGTTGGGCTGCCTTAGAAGTTCACTCA
GCTTGAACTGCTGTGGTAGGACCAGCAGTTGAAGTGTGATGAATAAAGTTCAGATATACT
TTATCTTTTTTAAAAGGTGTAAATGAAATCAGAGAATGTAAAGTCTATCTCTTATGCTAA
AGGTCCAAAGCCTCCTCCGTTTCAGGATTGCCCCAGTGTGGAAAGTACCCATAGTTGGTC
AGCTCCTTCCTCTTGGACCTTCTGGTTTCTTGGGGGTCGAGCATCGAGACACGCAGGCCT
CTGAGCAGGTCTCGTGCTGAAATCGATGTTGCACTTGGAGGCAGCAGCTGCTTTTCCACG
CATGGTAGTATTGATGCTTTTCACTCTGTAAAGGTTTTTGTTAGCTGTCAATAAGTGTGT
CTAAAATTTAGTGCTTCCAGGTAGTTAGAGTTCTCCAAATCAAGGACCAACGTAAACTTT
ATGTGCAGAAACAAACCTGAAAAGTATGCTTTAGAAGCTGTGCATAGTTCTAACTATAAG
TCAGACTGTATATTCAAATTGTAATTATGAGATTTAAATATTAGAAAAGTGTGTAAGGTA
GTATAATTGCCACTATTTTAAAATAGTTCAATTAAATACTGCTACAATATTTGTGTTGTG
CTTGAAAATATGTACAGTTTTTTCAGTAGTAATGCCTTTTGTTGTCCTTAAATATCTCTA
AAAGCGCCTTGATTTCAACATTACCTTTTTTTTTCAGCATTATCTTTTATAAATGTTAAG
AGTTTTTGCTTTTAGAAACTCTGAAGGAAATAATAGCTGGAAATCCCTCTGTAGCTTAAA
ATCAGTCGTTAAAACTCACAGTAGGGTAAGTAATTAGAACTACCTAATCTTAACATGTAA
ATAAGCATAATTTGTTCCAAAGATTAAATCCCAAAACTTAGTTCATATCTACTGTAATAT
ATTACTCAGACACTACTGGGCATTTCACGTTAAGAACTTATTCCATCAACCACAACAAAG
ACCAAATCTGAACTGCTAATAATGGCTGTTTTGCAGTGAATGGGCTAATGTTGGTGTGTT
AGATCTTAAGGTATCAATATTTCAGAACTCTCAGTGATTTTATTTCTAAATTCATGTACT
ATCCATCCATAAGTAAAAATAAAATGTCATATTCTTTTCTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATAGTCCTTTAAGTGTTCCAAGGGATTTGAAATTCCTGGCTTTGCCTATTATCATGGT
TGTTGCCTTTTCCATGTGCATTATCTGTTTGCTTATGGCTGGTGACACCTGGACAGAAAC
ACTGGCCTATGTGCTCTTCTGGGGAGTTGCAAGCATTGGAACATTTTTTATCATTCTTTA
CAATGGCAAAGATTTTGTCGATGCTCCCAGATTGGTCCAAAAAGAAAAGATAGACTGAAT
TTGTGTTTGTGGAAAGCGGCTTGGCTTGGAAGATTCCATTATGCAGAACTGGAGTCTTTA
CTGACCCGCTTTCCACATCAGCCTGAGATCTTTTTAAATCCTTTATCCGAGAGCACATCT
TGTGCTTTGTGTGGGGGTGATGACTTAGAACTGATCAGATGTTACTGCCTTGATGATCTC
TTTACTATTGGGTTGGTTATATTTATAATTTGAAGCTGTTCTGTAATTAAAATGTAACCT
GAATTCAGCTCACACAATGGAGGGAATCTATTCATTGTCAGTCTAATCAACTGTTGCAGA
ATAATATATTTAAAAAATTTAGCTTCTTTCATTATTTAAAACAGTAAAATTATTTTTCTA
GCTCAGTTTATTGTCATTGTCGGAGTAGTTGCAGTTAGCAGACATAAACTTTTCCATCCA
TCTTTGGACTTTGCTTAAAGGTTTAAAGATAAGCTAACTCTACTCTGTTTATAAATTGTA
AGTCTTTTACATACATCAAGCAGGTAGTCACAGTAGTCTGTGACTGCATGGTAGGAACGA
GGAGACCGGGGTCTGGTGTTCCTTTGGAGCGTCAGTTGGGCTGCCTTAGAAGTTCACTCA
GCTTGAACTGCTGTGGTAGGACCAGCAGTTGAAGTGTGATGAATAAAGTTCAGATATACT
TTATCTTTTTTAAAAGGTGTAAATGAAATCAGAGAATGTAAAGTCTATCTCTTATGCTAA
AGGTCCAAAGCCTCCTCCGTTTCAGGATTGCCCCAGTGTGGAAAGTACCCATAGTTGGTC
AGCTCCTTCCTCTTGGACCTTCTGGTTTCTTGGGGGTCGAGCATCGAGACACGCAGGCCT
CTGAGCAGGTCTCGTGCTGAAATCGATGTTGCACTTGGAGGCAGCAGCTGCTTTTCCACG
CATGGTAGTATTGATGCTTTTCACTCTGTAAAGGTTTTTGTTAGCTGTCAATAAGTGTGT
CTAAAATTTAGTGCTTCCAGGTAGTTAGAGTTCTCCAAATCAAGGACCAACGTAAACTTT
ATGTGCAGAAACAAACCTGAAAAGTATGCTTTAGAAGCTGTGCATAGTTCTAACTATAAG
TCAGACTGTATATTCAAATTGTAATTATGAGATTTAAATATTAGAAAAGTGTGTAAGGTA
GTATAATTGCCACTATTTTAAAATAGTTCAATTAAATACTGCTACAATATTTGTGTTGTG
CTTGAAAATATGTACAGTTTTTTCAGTAGTAATGCCTTTTGTTGTCCTTAAATATCTCTA
AAAGCGCCTTGATTTCAACATTACCTTTTTTTTTCAGCATTATCTTTTATAAATGTTAAG
AGTTTTTGCTTTTAGAAACTCTGAAGGAAATAATAGCTGGAAATCCCTCTGTAGCTTAAA
ATCAGTCGTTAAAACTCACAGTAGGGTAAGTAATTAGAACTACCTAATCTTAACATGTAA
ATAAGCATAATTTGTTCCAAAGATTAAATCCCAAAACTTAGTTCATATCTACTGTAATAT
ATTACTCAGACACTACTGGGCATTTCACGTTAAGAACTTATTCCATCAACCACAACAAAG
ACCAAATCTGAACTGCTAATAATGGCTGTTTTGCAGTGAATGGGCTAATGTTGGTGTGTT
AGATCTTAAGGTATCAATATTTCAGAACTCTCAGTGATTTTATTTCTAAATTCATGTACT
ATCCATCCATAAGTAAAAATAAAATGTCATATTCTTTTCTAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47189173|emb|CAG14530.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47189173|emb|CAG14530.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               220-339, + strand, RNAz p=0.996463

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               220-339, + strand, RNAz p=0.996463

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014016, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014016, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               101-1962, gnl|bosTau2|chr22 (42241787-42239944)
               

               
               101-1962, gnl|Hg17|chr3 (45760028-45761902)
               

               
               101-1962, gnl|Mm7|chr9 (123307032-123308832)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-1962, gnl|bosTau2|chr22 (42241787-42239944)
               

               
               101-1962, gnl|Hg17|chr3 (45760028-45761902)
               

               
               101-1962, gnl|Mm7|chr9 (123307032-123308832)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               lin (0.582411)
               

               
               fco (0.471624)
               

               
               mgp (0.461361)
               

               
               amn (0.417711)
               

               
               sin (0.349895)
               

               
               eye (0.341006)
               

               
               cty (0.31224)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               fco (0.471624)
               

               
               mgp (0.461361)
               

               
               amn (0.417711)
               

               
               sin (0.349895)
               

               
               eye (0.341006)
               

               
               cty (0.31224)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	101-1962, gnl\|bosTau2\|chr22 (42241787-42239944)
	101-1962, gnl\|Hg17\|chr3 (45760028-45761902)
	101-1962, gnl\|Mm7\|chr9 (123307032-123308832)

	lin (0.582411)
	fco (0.471624)
	mgp (0.461361)
	amn (0.417711)
	sin (0.349895)
	eye (0.341006)
	cty (0.31224)
	liv (0.292569)
	spl (0.286369)
	ret (0.257467)
	thg (0.253582)
	tra (0.246184)
	fli (0.202881)
	jej (0.197844)
	aor (0.195274)
	cmu (0.186393)
	rec (0.17307)
	mga (0.160205)
	tbr (0.154178)
	lun (0.150489)
	fat (0.147427)
	csk (0.140746)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	ecc (0.115035)
	jca (0.11396)