Non-Coding RNA Search

Ss1.1-Pig4-TMW8022J09.3

Sequence:


               
               CCGGCAGGTGAGGTTGCTCGGCAGGCGGGAGAGGCCAGTGAGGTGGCCCCGCCGGGCAGT
GAGGTCGGCGGAGCGGCGGCGGGTGAGGCAGGCATGGGTTGGAGTTGGCGTCTCTCCCCG
GACCTGACCACAACCAGCATCATGCAGTTACTAACTGCTCCTCTCTCACGAATTGATGCC
GCCCCGGAAAAGACGCCGCCCACCTTCCCGGAAACCTCAGCTGCTGTTCCACCAACGGCC
ACTGGAGGGCCCCAAACACCGCTGTGGATCACCCCAGCTTCCCATCACCCACACCAGACA
GGTGCCCAGCAAGCCCATTGACCACAGCACCATCACTTCCTGGGTGTCACCTCAGTTTGA
CACAACAGCAGAAAGCTGGCTCCCAGACAATCAGAAACGTCGTCACCGAGACCAGGCAAG
GCGTTCAAGTCGAAAATCTGCCAGCTCCAAGTTTCCGCATTTAGCGTTTGAGAGTCCACC
ATCTTCTGCCAGTTCAGCCACACTTGGGATCCCCTTGATCAGGGACCACCCCAGTCAGCC
AGAAAAGGACATTTCCAGGAGGCCCTTAGTCCCACTGCTCAGCCCCCAGAGCTGTGGGGA
GCTGTCAGCACAGGAGCTTCATAGCTTCCCTTATGTGTTCCTGCCCCCTGATATCCAGAC
GCCAGAGTCCTTGATGAAGGGCGGGCTCATTCCCTCGGAGCAGAGGGAAAACAGCCCCCC
CAGCTGCTCCCTTCCCACAAGTGTGCCCGAGAGCCCGGAGCCCGGGCCTGTTCTGGTTGA
AGATACCCCTGAGGAGAAGTACGGGTTAAAGGTCACCTGGAGGAGGAGACGACACCTGTT
CACTTACCTCAGGGAGAGGGGGAAGCTGAGCAGAAACCAGTTCCTTGTGAAAAACTGACT
GGATTTCTCAGACGTCAGTGGTCTCAAATTGCTGGTTTTCATGGAGTTGCTCAAGTCACT
TTTCTGGCTCACAAGAGAGTGTGTCAATAGAATAACTTGGAAATAACACCAATACCATCA
GGAGAAAAAAGATACTTTAACTAGAGCCCTGGAGCCATAAAAGAATTCAATTCCCAGATT
TGCTTTTGCAAAAGAGCTTGTGTCATAAACAGTTTTTAGTGTCAGCCACAGTTCGCTTCT
TATTTTTCTTGTATTAACTGTTTAAAATTTTTAAATATCTTATGACTGTTTAAAATATAT
GTAAATATATAGCTGCAGAAACTTTTTAGAGAACCCTGCTTCTGTCACTAATGCAGCACT
AATGCAGCACTACAGCCCCCTCCCATGATCTCTCTTAATTGTTGCCTTTAACCACTACTT
AGTCATTCTTTTAATTATGTCATTTAAATTGAATTCATTCCACATGTTTGAATACAATTC
TGTGGGGCTCAGCGACCGCTTCCTCTGACCTGATGCATGGGAAGCAAAGTGACTTTATAG
TTAAGCTGATGCCTCTGCAGTCTTGGCCCATCTGCTCAAAGGGCAAGATGCTGAACAGGC
AACTAGCCTGTTTAATGAATTGGTGGGATCAGGGCAATAAAGGGGACATAGTTACCTAGG
GTTGCTGTTCTGATTTTTTGTTTCCAACTGAAGTAATCTGTCAATATAGGATAGGGTGGG
AAATGACTTTTTGTTGTAACTGTTTAAAATGTATGTAAATAAATGTTTTCAAATACTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCAGGTGAGGTTGCTCGGCAGGCGGGAGAGGCCAGTGAGGTGGCCCCGCCGGGCAGT
GAGGTCGGCGGAGCGGCGGCGGGTGAGGCAGGCATGGGTTGGAGTTGGCGTCTCTCCCCG
GACCTGACCACAACCAGCATCATGCAGTTACTAACTGCTCCTCTCTCACGAATTGATGCC
GCCCCGGAAAAGACGCCGCCCACCTTCCCGGAAACCTCAGCTGCTGTTCCACCAACGGCC
ACTGGAGGGCCCCAAACACCGCTGTGGATCACCCCAGCTTCCCATCACCCACACCAGACA
GGTGCCCAGCAAGCCCATTGACCACAGCACCATCACTTCCTGGGTGTCACCTCAGTTTGA
CACAACAGCAGAAAGCTGGCTCCCAGACAATCAGAAACGTCGTCACCGAGACCAGGCAAG
GCGTTCAAGTCGAAAATCTGCCAGCTCCAAGTTTCCGCATTTAGCGTTTGAGAGTCCACC
ATCTTCTGCCAGTTCAGCCACACTTGGGATCCCCTTGATCAGGGACCACCCCAGTCAGCC
AGAAAAGGACATTTCCAGGAGGCCCTTAGTCCCACTGCTCAGCCCCCAGAGCTGTGGGGA
GCTGTCAGCACAGGAGCTTCATAGCTTCCCTTATGTGTTCCTGCCCCCTGATATCCAGAC
GCCAGAGTCCTTGATGAAGGGCGGGCTCATTCCCTCGGAGCAGAGGGAAAACAGCCCCCC
CAGCTGCTCCCTTCCCACAAGTGTGCCCGAGAGCCCGGAGCCCGGGCCTGTTCTGGTTGA
AGATACCCCTGAGGAGAAGTACGGGTTAAAGGTCACCTGGAGGAGGAGACGACACCTGTT
CACTTACCTCAGGGAGAGGGGGAAGCTGAGCAGAAACCAGTTCCTTGTGAAAAACTGACT
GGATTTCTCAGACGTCAGTGGTCTCAAATTGCTGGTTTTCATGGAGTTGCTCAAGTCACT
TTTCTGGCTCACAAGAGAGTGTGTCAATAGAATAACTTGGAAATAACACCAATACCATCA
GGAGAAAAAAGATACTTTAACTAGAGCCCTGGAGCCATAAAAGAATTCAATTCCCAGATT
TGCTTTTGCAAAAGAGCTTGTGTCATAAACAGTTTTTAGTGTCAGCCACAGTTCGCTTCT
TATTTTTCTTGTATTAACTGTTTAAAATTTTTAAATATCTTATGACTGTTTAAAATATAT
GTAAATATATAGCTGCAGAAACTTTTTAGAGAACCCTGCTTCTGTCACTAATGCAGCACT
AATGCAGCACTACAGCCCCCTCCCATGATCTCTCTTAATTGTTGCCTTTAACCACTACTT
AGTCATTCTTTTAATTATGTCATTTAAATTGAATTCATTCCACATGTTTGAATACAATTC
TGTGGGGCTCAGCGACCGCTTCCTCTGACCTGATGCATGGGAAGCAAAGTGACTTTATAG
TTAAGCTGATGCCTCTGCAGTCTTGGCCCATCTGCTCAAAGGGCAAGATGCTGAACAGGC
AACTAGCCTGTTTAATGAATTGGTGGGATCAGGGCAATAAAGGGGACATAGTTACCTAGG
GTTGCTGTTCTGATTTTTTGTTTCCAACTGAAGTAATCTGTCAATATAGGATAGGGTGGG
AAATGACTTTTTGTTGTAACTGTTTAAAATGTATGTAAATAAATGTTTTCAAATACTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BSD3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BSD3_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               772-890, + strand, RNAz p=0.85998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               772-890, + strand, RNAz p=0.85998

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               772-927, gnl|bosTau2|chr2 (53966105-53966258)
               

               
               772-927, gnl|Hg17|chr12 (2867760-2868055)
               

               
               772-927, gnl|Mm7|chr6 (128381015-128380821)
               


               
               1039-1316, gnl|bosTau2|chr2 (53966260-53966531)
               

               
               1039-1316, gnl|Hg17|chr12 (2868057-2868466)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               772-927, gnl|bosTau2|chr2 (53966105-53966258)
               

               
               772-927, gnl|Hg17|chr12 (2867760-2868055)
               

               
               772-927, gnl|Mm7|chr6 (128381015-128380821)
               


               
               1039-1316, gnl|bosTau2|chr2 (53966260-53966531)
               

               
               1039-1316, gnl|Hg17|chr12 (2868057-2868466)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cty (0.41632)
               

               
               elu (0.385356)
               

               
               cmu (0.186393)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.41632)
               

               
               elu (0.385356)
               

               
               cmu (0.186393)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	772-927, gnl\|bosTau2\|chr2 (53966105-53966258)
	772-927, gnl\|Hg17\|chr12 (2867760-2868055)
	772-927, gnl\|Mm7\|chr6 (128381015-128380821)

	1039-1316, gnl\|bosTau2\|chr2 (53966260-53966531)
	1039-1316, gnl\|Hg17\|chr12 (2868057-2868466)

	cty (0.41632)
	elu (0.385356)
	cmu (0.186393)
	eru (0.120048)
	ebs (0.118301)