Non-Coding RNA Search

Ss1.1-Pig4-TMW8022J11.5

Sequence:


               
               AGCGCGCCTTGGCCCGCTGGCCTTGGCTGCAGCTCCTCGGGAGAGCCGGGGCGCCCACGC
GAGAACCTCCCTACCTGAGGACGCTGGGAACACGGATTCCTGGATCCCACCAGCCTACGA
AGAAAGCCACGGGCGGCGACCCCTGGGACCAGGACGACCAAGGAGGAGGACGACCAGAAC
TGACCAGCCAGCCCCCTTGGCTAAAGGCTTAGACCTGTGCCCTAGTGAGGGGGCATTGGT
CGCCAACCCCTGACCTTTGCTATGCTTCTGCCTTGTTGCTCTGATACTTGCCTCTATGTC
TCTGCCTGTGTTAACCTGCCAGCGCCCTGGAGGGTTGCCATCCCCAGGGAGGTGTCAGTC
TTTCTCGCTCCACTTGTTGTCGCCCGAATGACGTCCTGAACGGAAGGGTCCCTTTGGGAA
CGTCTCGGGAGGCCGACCTGGGCCAAGGGCACAACCAGCATCTCACTGGCAATTCCAAGG
CCCTGGGTGGGCTTCTGGAATGAGCATGAGCCCCGACGTCATGCCACGGAACTGCCAGGG
GCACCCCCCCTCCTTTGAGCTCTCCCTGTCCCTCCTGGGGGGACAGGGACGAGAAGAGCA
GTCTCCCAGGGGGTTGTGAGTATTGAATGAGATGAAGTCGCCTCGGGCAGGGCCAGGCAT
AGAGGAGGCAGTCGGCAAATGTTTGTTGATAAAGTTTGGCCGATCAGTCCAGCCCCGGCC
CGCTCCCGTGTCTCACCGTCTCATTTATTCTCCCACAGCACTCCGGATGGCCCCTGGCCA
CGGGGCTCTGCCCGCACCAGGTAGGGCTCCACCCAGACGGGCGTCGGGCTGACATGAGTC
AGGGCACGCACTGTGCCTGTGGTCATTTCTAGAACTTTCTGTGTTCTCGGCCTGCGTTGT
TACTGCGTCAGGCATACGTGGGAGTGAGGCGGCCCCACTGACAGGAGTATGAATTTGGCT
TCGATTTGAGTAATTTTAAAAGGTGACCTCCAGCCCCCACCCCAGGGGCACAGGACTGAT
TTACGTGTCCTGAGGTCCTGAGGCTGGAGGAGCGTTAGCATCTTGTCGCATTGCTGGCAA
GAGAAGGGGTCCAAGTTGGCCCCTGGGTGCCATTTGTGGCTGCCCCTTACCCCCCCTGCC
CCAGAGTTCTCCTGAGCGCTCTTTGATTTCCAATCAAACATTTGACAGTGGGACAGCCTG
TTTGAAATCCCAGCTGCCCAGGGTGGTCTCGGGGGGTCTTGGGTGGCCCCAGTGCTGGTA
CCATGTGCTGGGACCACCTCTCAATAACGGTGTGACCTTAAATACGTCGCTTAACTTCTC
CGGGTCTCAGTTCTTTTCATGGCCTAAATGGGGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGCGCCTTGGCCCGCTGGCCTTGGCTGCAGCTCCTCGGGAGAGCCGGGGCGCCCACGC
GAGAACCTCCCTACCTGAGGACGCTGGGAACACGGATTCCTGGATCCCACCAGCCTACGA
AGAAAGCCACGGGCGGCGACCCCTGGGACCAGGACGACCAAGGAGGAGGACGACCAGAAC
TGACCAGCCAGCCCCCTTGGCTAAAGGCTTAGACCTGTGCCCTAGTGAGGGGGCATTGGT
CGCCAACCCCTGACCTTTGCTATGCTTCTGCCTTGTTGCTCTGATACTTGCCTCTATGTC
TCTGCCTGTGTTAACCTGCCAGCGCCCTGGAGGGTTGCCATCCCCAGGGAGGTGTCAGTC
TTTCTCGCTCCACTTGTTGTCGCCCGAATGACGTCCTGAACGGAAGGGTCCCTTTGGGAA
CGTCTCGGGAGGCCGACCTGGGCCAAGGGCACAACCAGCATCTCACTGGCAATTCCAAGG
CCCTGGGTGGGCTTCTGGAATGAGCATGAGCCCCGACGTCATGCCACGGAACTGCCAGGG
GCACCCCCCCTCCTTTGAGCTCTCCCTGTCCCTCCTGGGGGGACAGGGACGAGAAGAGCA
GTCTCCCAGGGGGTTGTGAGTATTGAATGAGATGAAGTCGCCTCGGGCAGGGCCAGGCAT
AGAGGAGGCAGTCGGCAAATGTTTGTTGATAAAGTTTGGCCGATCAGTCCAGCCCCGGCC
CGCTCCCGTGTCTCACCGTCTCATTTATTCTCCCACAGCACTCCGGATGGCCCCTGGCCA
CGGGGCTCTGCCCGCACCAGGTAGGGCTCCACCCAGACGGGCGTCGGGCTGACATGAGTC
AGGGCACGCACTGTGCCTGTGGTCATTTCTAGAACTTTCTGTGTTCTCGGCCTGCGTTGT
TACTGCGTCAGGCATACGTGGGAGTGAGGCGGCCCCACTGACAGGAGTATGAATTTGGCT
TCGATTTGAGTAATTTTAAAAGGTGACCTCCAGCCCCCACCCCAGGGGCACAGGACTGAT
TTACGTGTCCTGAGGTCCTGAGGCTGGAGGAGCGTTAGCATCTTGTCGCATTGCTGGCAA
GAGAAGGGGTCCAAGTTGGCCCCTGGGTGCCATTTGTGGCTGCCCCTTACCCCCCCTGCC
CCAGAGTTCTCCTGAGCGCTCTTTGATTTCCAATCAAACATTTGACAGTGGGACAGCCTG
TTTGAAATCCCAGCTGCCCAGGGTGGTCTCGGGGGGTCTTGGGTGGCCCCAGTGCTGGTA
CCATGTGCTGGGACCACCTCTCAATAACGGTGTGACCTTAAATACGTCGCTTAACTTCTC
CGGGTCTCAGTTCTTTTCATGGCCTAAATGGGGATT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               156-302, - strand, RNAz p=0.999737
               

               
               382-540, - strand, RNAz p=0.9982

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-302, - strand, RNAz p=0.999737
               

               
               382-540, - strand, RNAz p=0.9982

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               492-570, + strand, RNAmicro p=0.993886

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               492-570, + strand, RNAmicro p=0.993886

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               77-1356, gnl|bosTau2|chr21 (45521545-45522848)
               

               
               77-1356, gnl|Hg17|chr14 (100365123-100366431)
               

               
               77-1356, gnl|Mm7|chr12 (107065256-107066547)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-1356, gnl|bosTau2|chr21 (45521545-45522848)
               

               
               77-1356, gnl|Hg17|chr14 (100365123-100366431)
               

               
               77-1356, gnl|Mm7|chr12 (107065256-107066547)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ese (0.379507)
               

               
               eep (0.245128)
               

               
               cbr (0.127975)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.379507)
               

               
               eep (0.245128)
               

               
               cbr (0.127975)
               

               
               ebs (0.118301)

	156-302, - strand, RNAz p=0.999737
	382-540, - strand, RNAz p=0.9982

	77-1356, gnl\|bosTau2\|chr21 (45521545-45522848)
	77-1356, gnl\|Hg17\|chr14 (100365123-100366431)
	77-1356, gnl\|Mm7\|chr12 (107065256-107066547)