Non-Coding RNA Search

Ss1.1-Pig4-TMW8022J16.3.5

Sequence:


               
               CCCGAAGTAGTTCGAGCCGACGGGCTGCGCTGTCCGGTTGTTGCGTTGCATTTCCTTCCT
CTCTCGCTCCACGCTCCAGCAGCGGCCAGAGCAGCGGCGCGAGAATATCCCGGCGGCCTG
CTCTCCTCCTTCGGCGCGCCCTCCTCGCTCGGCCAGCGTCGTCAGTCAGTCGTCAGTCAG
TCGGTGGCCCGCGCCCGGCTAGCGCTCAGGCCCAGCGGCCAGAGCTAGCGCCCAGCCTGA
GAGCCAACTCGCTCCGGCGGCGCGGGCACCGGGAGTGGAGTGTGGGTCTCGGGGGCCCTA
GGGCAGGCGAGCGAGCGAGGCCGAGGGGTGACCGGGGCAGGTCGTGGCGCCGCGAAGATG
GTCGCCAAGCAGCGGATCCGTATGGCTAACGAGAAGCACAGCAAGAACATCACCCAGCGC
GGCAACGTCGCCAAGACCTCGAGAAATGCTCCCGAAGAGAAGGCGTCTGTAGGACCCTGG
TTATTGGCTCTCTTCATTTTTGTTGTTTGTGGTTCCGCAATTTTCCAGATTATTCAAAGT
ATCAGGATGGGCATGTGAAGTGACTGACCTTAAGATGTTTCCATTCTCCTGTGAATTTTA
ACTTGAACTCATTCCTGATGTTTGATACCCTGGTTAAAAACAATTCAGTAAAGCATCCTG
CCTCAGAATGACTTTTCATATCATCCTTCATGTGTCATTCCAAGGTTTCTTCACAAGTCA
TTCCAAGTTTTCTAGTCCATACCACAGTGCCTTGCAAAAGCACCACATGAATAAAGCAAT
AAAATTTGATTAAGCTACAGTAGTGGACCCTACTTATTCAGTCAGTAAAGAGTAAATTTT
TTTTAATGTGGTTATTAGAACAGTATATAGATAATTAGGTTAAATATGTGTAGACAGGGT
CTAGATTTTGTTAGCCCTAATGTGTAAATGCAATTAGCATAATTTAAAATTTGGAATCCT
ATGGTTTTTATATAGCTAGGCACTTTATTACTATCTCTTGAAAGCACACTCCCTTATAGG
GCCATGTAACTGTCCTGTAACAAGGTGCTTATAAATGGAACAACCACAGTTAGCCTAGTT
TTCCCACAATTTTTAGCACCTAAAATTTTTAAAAAGCTTCTAAATGCCTCATATAAAGGG
AGATGCTTAGATCCACAATGTCTAATTTAACAGTATTATTTCTATTACACTACCTTGGAT
TTTGCATGAGTGAATATACTAACCTAAGATGCCGTAAGAAGACAACTTGGTTGAGCATTT
TGTTCACTTTCCTTAAAAATAACCATTGTGGAATAAAGTCAGGGAAGCTTTGTCTATATC
TCCATCGATTTTACCAGGATTACTTTAATATATCAAAGGGGTCTATTATGCTGGACGTTT
TTGGGAGAAAATACTACTAAAAATCAATGCCTCATCAGGACATACTGTTGAGTCGAGTGT
GCCATAACACATCTTAGCATGTTAATAGCACTTTTAATACCAAAAAAGGCACATCAACTG
AAACGTTACACTTAGTTTGGAAATGATTTTTCTTGATTTATGATTAAAATTGTTAGGGTA
CTGGATACATCAGCTTAAAGTGTCATGTGAAATTAAATGGATTTCCTGATAAGGATCAGT
CTTTTGTCTTCCCTTTGTTGTATGATTTTATAGGTTATGATTGATCAAACTTTCTTTTTA
TTAATGGTAAGGGTTAGTGATAAGGCAGGCTCTGGGTTTTCTGATACTGTTGAAAATTGC
TGGTATTGGCTATTTAAATGCTTAGCCATAACTTCATAAAAAAGCCTGAGAAGTGTCTAT
GTGTTAATGAATTGGAAAGAAGCCCGCTTGTTTGCTTTGTTAATTGCCTCAGGATATCTC
TAAAATAAGCTGTTTTAAGAGAAACAGAAGGGAAATCTACTACCTAGTTTATACACAGTG
TAAACCTCAGATCTTCTGACACCCCTTAAGTATATGGGAGAATGAGGGAGAGGAGTGGTT
AAAAATGTTTGGGAACTTGACTACTCTGGAATAAGAAAGGAATCAGCTGACCTTGGGCCA
GCAGGTTTTTATTGTCTGCATTGTTACCTGCCTTTCTCACCCAGGAAGTCAACCAAGTAC
TTATTTCCCCTTTGAAACAAGTGTCTTGATTACCTAATTCTGTTTTAACTTTAAAAATGA
AAGTTATTGTTCTAAATTCATAGCAGGTGCCTTATTCTTTGTTTTGAGTCAAACCATTCC
ATATCAGACAGAATTTCCCGTGGTTTACTATAGACAATTGGCTTTAGGATGCTGAGGTGT
TTTTTTGTTGTTGGTTTTTGTTTTGTTTTTTTTTTAACGTACAATGTCTATTCATTTGGC
TGGTAAATTGGTATAGTGGACAATCATTTTACATATGTAAAGTTGCATTCCCTTTGTATT
TCGTATGTAATTACCAATTGAGTGCATTTTATATTAAGGATTATGCATGTTTGGGTTAAT
GAAAGCTATATCTTACTTGATTTATTCTTTAAAAATAAAGTTCCCTGAATATTTGATGCC
TTCTAAAAGGAAATGATTTTATAGAGTTCTTATCTGAGTATACTTTTTATAGTTAATAGA
AAATGATTTTAAAGAACGCTTGATGTGTTATACTTGAGTTAAAAGAAGTATCCAGAGGCA
CAGATTAAGTTTTATAACTAGGAATAGGTGACAAGAAAAATATATAAAAGCACAATAAAT
TAAATACTTTCCCACCTGGGATTTACCCTCACCTCATTGAGTCTGGTTCAAGGAAAAAGC
ACAGGTTTTTTTGTTTTGTTTTTTTGATCTCCCTTTCTGGGTTGAATTTTATATATCATC
TAATGTTGAGCACAATGTGAGAATAAGTACTTTATTGGGGTTATCCACATTATCCAGTTA
CTCTGTAATTTAGCTATAATGTTTCAAGAAGTTGTCAATGATTTCATTGTACCTGTTGGG
TTGTATATAATGTTGCTCAGAATAATTGAGTGGGCTTCCAAAATAGGTAAAGATTTTCAT
TGTAACAGAATGCATTGTAATAGGTTTTGATTTACATTAAAGAAATGTATATACTTAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGAAGTAGTTCGAGCCGACGGGCTGCGCTGTCCGGTTGTTGCGTTGCATTTCCTTCCT
CTCTCGCTCCACGCTCCAGCAGCGGCCAGAGCAGCGGCGCGAGAATATCCCGGCGGCCTG
CTCTCCTCCTTCGGCGCGCCCTCCTCGCTCGGCCAGCGTCGTCAGTCAGTCGTCAGTCAG
TCGGTGGCCCGCGCCCGGCTAGCGCTCAGGCCCAGCGGCCAGAGCTAGCGCCCAGCCTGA
GAGCCAACTCGCTCCGGCGGCGCGGGCACCGGGAGTGGAGTGTGGGTCTCGGGGGCCCTA
GGGCAGGCGAGCGAGCGAGGCCGAGGGGTGACCGGGGCAGGTCGTGGCGCCGCGAAGATG
GTCGCCAAGCAGCGGATCCGTATGGCTAACGAGAAGCACAGCAAGAACATCACCCAGCGC
GGCAACGTCGCCAAGACCTCGAGAAATGCTCCCGAAGAGAAGGCGTCTGTAGGACCCTGG
TTATTGGCTCTCTTCATTTTTGTTGTTTGTGGTTCCGCAATTTTCCAGATTATTCAAAGT
ATCAGGATGGGCATGTGAAGTGACTGACCTTAAGATGTTTCCATTCTCCTGTGAATTTTA
ACTTGAACTCATTCCTGATGTTTGATACCCTGGTTAAAAACAATTCAGTAAAGCATCCTG
CCTCAGAATGACTTTTCATATCATCCTTCATGTGTCATTCCAAGGTTTCTTCACAAGTCA
TTCCAAGTTTTCTAGTCCATACCACAGTGCCTTGCAAAAGCACCACATGAATAAAGCAAT
AAAATTTGATTAAGCTACAGTAGTGGACCCTACTTATTCAGTCAGTAAAGAGTAAATTTT
TTTTAATGTGGTTATTAGAACAGTATATAGATAATTAGGTTAAATATGTGTAGACAGGGT
CTAGATTTTGTTAGCCCTAATGTGTAAATGCAATTAGCATAATTTAAAATTTGGAATCCT
ATGGTTTTTATATAGCTAGGCACTTTATTACTATCTCTTGAAAGCACACTCCCTTATAGG
GCCATGTAACTGTCCTGTAACAAGGTGCTTATAAATGGAACAACCACAGTTAGCCTAGTT
TTCCCACAATTTTTAGCACCTAAAATTTTTAAAAAGCTTCTAAATGCCTCATATAAAGGG
AGATGCTTAGATCCACAATGTCTAATTTAACAGTATTATTTCTATTACACTACCTTGGAT
TTTGCATGAGTGAATATACTAACCTAAGATGCCGTAAGAAGACAACTTGGTTGAGCATTT
TGTTCACTTTCCTTAAAAATAACCATTGTGGAATAAAGTCAGGGAAGCTTTGTCTATATC
TCCATCGATTTTACCAGGATTACTTTAATATATCAAAGGGGTCTATTATGCTGGACGTTT
TTGGGAGAAAATACTACTAAAAATCAATGCCTCATCAGGACATACTGTTGAGTCGAGTGT
GCCATAACACATCTTAGCATGTTAATAGCACTTTTAATACCAAAAAAGGCACATCAACTG
AAACGTTACACTTAGTTTGGAAATGATTTTTCTTGATTTATGATTAAAATTGTTAGGGTA
CTGGATACATCAGCTTAAAGTGTCATGTGAAATTAAATGGATTTCCTGATAAGGATCAGT
CTTTTGTCTTCCCTTTGTTGTATGATTTTATAGGTTATGATTGATCAAACTTTCTTTTTA
TTAATGGTAAGGGTTAGTGATAAGGCAGGCTCTGGGTTTTCTGATACTGTTGAAAATTGC
TGGTATTGGCTATTTAAATGCTTAGCCATAACTTCATAAAAAAGCCTGAGAAGTGTCTAT
GTGTTAATGAATTGGAAAGAAGCCCGCTTGTTTGCTTTGTTAATTGCCTCAGGATATCTC
TAAAATAAGCTGTTTTAAGAGAAACAGAAGGGAAATCTACTACCTAGTTTATACACAGTG
TAAACCTCAGATCTTCTGACACCCCTTAAGTATATGGGAGAATGAGGGAGAGGAGTGGTT
AAAAATGTTTGGGAACTTGACTACTCTGGAATAAGAAAGGAATCAGCTGACCTTGGGCCA
GCAGGTTTTTATTGTCTGCATTGTTACCTGCCTTTCTCACCCAGGAAGTCAACCAAGTAC
TTATTTCCCCTTTGAAACAAGTGTCTTGATTACCTAATTCTGTTTTAACTTTAAAAATGA
AAGTTATTGTTCTAAATTCATAGCAGGTGCCTTATTCTTTGTTTTGAGTCAAACCATTCC
ATATCAGACAGAATTTCCCGTGGTTTACTATAGACAATTGGCTTTAGGATGCTGAGGTGT
TTTTTTGTTGTTGGTTTTTGTTTTGTTTTTTTTTTAACGTACAATGTCTATTCATTTGGC
TGGTAAATTGGTATAGTGGACAATCATTTTACATATGTAAAGTTGCATTCCCTTTGTATT
TCGTATGTAATTACCAATTGAGTGCATTTTATATTAAGGATTATGCATGTTTGGGTTAAT
GAAAGCTATATCTTACTTGATTTATTCTTTAAAAATAAAGTTCCCTGAATATTTGATGCC
TTCTAAAAGGAAATGATTTTATAGAGTTCTTATCTGAGTATACTTTTTATAGTTAATAGA
AAATGATTTTAAAGAACGCTTGATGTGTTATACTTGAGTTAAAAGAAGTATCCAGAGGCA
CAGATTAAGTTTTATAACTAGGAATAGGTGACAAGAAAAATATATAAAAGCACAATAAAT
TAAATACTTTCCCACCTGGGATTTACCCTCACCTCATTGAGTCTGGTTCAAGGAAAAAGC
ACAGGTTTTTTTGTTTTGTTTTTTTGATCTCCCTTTCTGGGTTGAATTTTATATATCATC
TAATGTTGAGCACAATGTGAGAATAAGTACTTTATTGGGGTTATCCACATTATCCAGTTA
CTCTGTAATTTAGCTATAATGTTTCAAGAAGTTGTCAATGATTTCATTGTACCTGTTGGG
TTGTATATAATGTTGCTCAGAATAATTGAGTGGGCTTCCAAAATAGGTAAAGATTTTCAT
TGTAACAGAATGCATTGTAATAGGTTTTGATTTACATTAAAGAAATGTATATACTTAACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13540636|ref|NP_110462.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13540636|ref|NP_110462.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1912-2019, + strand, RNAz p=0.591472

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1912-2019, + strand, RNAz p=0.591472

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014445, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014445, +

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-441, gnl|bosTau2|chr1 (74724370-74723908)
               

               
               1-441, gnl|Hg17|chr3 (151746989-151746537)
               


               
               493-2286, gnl|bosTau2|chr1 (74722393-74720569)
               

               
               493-2286, gnl|Hg17|chr3 (151745009-151743199)
               

               
               493-2286, gnl|Mm7|chr3 (58652666-58650960)
               


               
               2305-3059, gnl|bosTau2|chr1 (74720579-74719824)
               

               
               2305-3059, gnl|Hg17|chr3 (151743209-151742482)
               

               
               2305-3059, gnl|Mm7|chr3 (58650969-58649536)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-441, gnl|bosTau2|chr1 (74724370-74723908)
               

               
               1-441, gnl|Hg17|chr3 (151746989-151746537)
               


               
               493-2286, gnl|bosTau2|chr1 (74722393-74720569)
               

               
               493-2286, gnl|Hg17|chr3 (151745009-151743199)
               

               
               493-2286, gnl|Mm7|chr3 (58652666-58650960)
               


               
               2305-3059, gnl|bosTau2|chr1 (74720579-74719824)
               

               
               2305-3059, gnl|Hg17|chr3 (151743209-151742482)
               

               
               2305-3059, gnl|Mm7|chr3 (58650969-58649536)

Expressed library(ies): 58 entry(ies)

More info

Expressed library(ies): 58 entry(ies)

Help | Less info


               
               mgm (1.2624)
               

               
               pro (1.02407)
               

               
               sag (0.913576)
               

               
               pla (0.802032)
               

               
               mga (0.801025)
               

               
               liv (0.731422)
               

               
               mgp (0.692042)
               

               
               cut (0.679694)
               

               
               lyg (0.665513)
               

               
               cje (0.660939)
               

               
               tra (0.61546)
               

               
               cst (0.560146)
               

               
               cki (0.495704)
               

               
               fcc (0.39557)
               

               
               cmu (0.372787)
               

               
               eru (0.360144)
               

               
               ton (0.351)
               

               
               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               duo (0.345602)
               

               
               cbl (0.344392)
               

               
               fhi (0.339155)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 58 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (1.2624)
               

               
               pro (1.02407)
               

               
               sag (0.913576)
               

               
               pla (0.802032)
               

               
               mga (0.801025)
               

               
               liv (0.731422)
               

               
               mgp (0.692042)
               

               
               cut (0.679694)
               

               
               lyg (0.665513)
               

               
               cje (0.660939)
               

               
               tra (0.61546)
               

               
               cst (0.560146)
               

               
               cki (0.495704)
               

               
               fcc (0.39557)
               

               
               cmu (0.372787)
               

               
               eru (0.360144)
               

               
               ton (0.351)
               

               
               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               duo (0.345602)
               

               
               cbl (0.344392)
               

               
               fhi (0.339155)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	1-441, gnl\|bosTau2\|chr1 (74724370-74723908)
	1-441, gnl\|Hg17\|chr3 (151746989-151746537)

	493-2286, gnl\|bosTau2\|chr1 (74722393-74720569)
	493-2286, gnl\|Hg17\|chr3 (151745009-151743199)
	493-2286, gnl\|Mm7\|chr3 (58652666-58650960)

	2305-3059, gnl\|bosTau2\|chr1 (74720579-74719824)
	2305-3059, gnl\|Hg17\|chr3 (151743209-151742482)
	2305-3059, gnl\|Mm7\|chr3 (58650969-58649536)

	mgm (1.2624)
	pro (1.02407)
	sag (0.913576)
	pla (0.802032)
	mga (0.801025)
	liv (0.731422)
	mgp (0.692042)
	cut (0.679694)
	lyg (0.665513)
	cje (0.660939)
	tra (0.61546)
	cst (0.560146)
	cki (0.495704)
	fcc (0.39557)
	cmu (0.372787)
	eru (0.360144)
	ton (0.351)
	fbs (0.350693)
	sin (0.349895)
	rec (0.346141)
	duo (0.345602)
	cbl (0.344392)
	fhi (0.339155)
	lun (0.300978)
	cte (0.29274)
	fce (0.271592)
	kid (0.259471)
	ova (0.258264)
	ret (0.257467)
	bla (0.248694)
	cbe (0.239234)
	pgl (0.236967)
	pan (0.23596)
	ece (0.229305)
	spc (0.226732)
	cty (0.20816)
	tes (0.207814)
	jej (0.197844)
	eje (0.197668)
	col (0.195008)
	ldo (0.194005)
	ill (0.175593)
	nje (0.16592)
	isp (0.150376)
	fat (0.147427)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	csk (0.140746)
	nca (0.136874)
	ute (0.132784)
	cov (0.132153)
	sug (0.127291)
	eep (0.122564)
	ebs (0.118301)
	nbm (0.0993246)