Non-Coding RNA Search

Ss1.1-Pig4-TMW8022K03.3.5

Sequence:


               
               TTTTATCAGCTTTACAAACTTGGATATTCTTCAGTGAAATTTTGGGTTATTTGATCAAAT
AGAAATGGGAAGTAATTGAAACTGAAATGAAGGAAGGACCTTTGCTACATGGAGTTCTGT
GATAGTTTTATGTCTTAAACCTGGTTTAAAGGTAGGATAACATTTTTTAACCTTTGCTTT
AGCATAAATTTGGCTTACTGAATGAATGACTTGAGATTAGAAGTATTCAGTTGTTTGAAG
ATCAAAGCACAGGTTATTTTAAAGATAATATGTATCTTTTTAAAAACTGTCCAAGCTGAT
TAGAACAGGTTTAGGAATTGGTCTGATTTGGTTTAATTGCTGCAGTCTGCATGTATTAAA
TAGCTTTACTTCACATGTTTGTGTACTTAAAAGATTGTGTAGATGTACTGGGCAGGTTTT
GTCAAATCATCTATTAAAAGATTGTTTTGTATTCTCTTCAGGACCTTTGTAGAAGAGGCT
AATACATTTAAGTAGAGATAATGCTAATGGTATTTTCCCCTTGCTCTTATATATAAAAGA
AACATTTCCATTTTATAGCTTTCTCCTATATGTAGAAGAAAATTACTTCACTATCATCAG
GTGTGTCTGGATGTATGTGGTTGACTGAAAATACAGCAAAAACCCTTCTGTATCTCCACT
GAAAGTGACAGTTAAAAACTAAGTCTGCTAGTCAAGATGTGAAAGGTGGCCCATGATGCA
TGGCCTTAAAAGGCATGAATGCAGGAGTGTAGCATCCTTGATGACTGACTACTCCTCAGC
ATCTGTCAGTAGTTCACATGTTTAAAAAGCAGAGTAATTTCTGTGTCTTGGGTGCATCAG
CACTTAGGAGCTGAGTTACATCTTAATCTGGGGAAAGAATACTGGGCTACAGTTACATTA
TAGGATGTTTTTCCCTCCCTCTCCCACTTAAGGTCTTTTTAGTGTTGTTTTGCCCATTCA
AAAAGATAGGCCTTTTCTAGATAAAAGAACAGTGGCCAGAAATTTTGCTTTTTGCTAAAT
GCTTAGGTATTTGCCATAGCCGTTTCTAATGTCATGGATTCTGAGGAAGTGTCAGTTACA
CAATGATCTTCCTTTATTGATGTCTTACTTCATGTTCAGTGTTTTAAAAATATAAATTAC
ACTCTACATCCATACCCAGATTTACTTATTTTATCAGAAAAAACTTGAGAAATTTGTAGA
TCAAATTAAGAGACAATAAGTGTACATTGTTGAATAAAAAATTTTAAAGTTTCAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTATCAGCTTTACAAACTTGGATATTCTTCAGTGAAATTTTGGGTTATTTGATCAAAT
AGAAATGGGAAGTAATTGAAACTGAAATGAAGGAAGGACCTTTGCTACATGGAGTTCTGT
GATAGTTTTATGTCTTAAACCTGGTTTAAAGGTAGGATAACATTTTTTAACCTTTGCTTT
AGCATAAATTTGGCTTACTGAATGAATGACTTGAGATTAGAAGTATTCAGTTGTTTGAAG
ATCAAAGCACAGGTTATTTTAAAGATAATATGTATCTTTTTAAAAACTGTCCAAGCTGAT
TAGAACAGGTTTAGGAATTGGTCTGATTTGGTTTAATTGCTGCAGTCTGCATGTATTAAA
TAGCTTTACTTCACATGTTTGTGTACTTAAAAGATTGTGTAGATGTACTGGGCAGGTTTT
GTCAAATCATCTATTAAAAGATTGTTTTGTATTCTCTTCAGGACCTTTGTAGAAGAGGCT
AATACATTTAAGTAGAGATAATGCTAATGGTATTTTCCCCTTGCTCTTATATATAAAAGA
AACATTTCCATTTTATAGCTTTCTCCTATATGTAGAAGAAAATTACTTCACTATCATCAG
GTGTGTCTGGATGTATGTGGTTGACTGAAAATACAGCAAAAACCCTTCTGTATCTCCACT
GAAAGTGACAGTTAAAAACTAAGTCTGCTAGTCAAGATGTGAAAGGTGGCCCATGATGCA
TGGCCTTAAAAGGCATGAATGCAGGAGTGTAGCATCCTTGATGACTGACTACTCCTCAGC
ATCTGTCAGTAGTTCACATGTTTAAAAAGCAGAGTAATTTCTGTGTCTTGGGTGCATCAG
CACTTAGGAGCTGAGTTACATCTTAATCTGGGGAAAGAATACTGGGCTACAGTTACATTA
TAGGATGTTTTTCCCTCCCTCTCCCACTTAAGGTCTTTTTAGTGTTGTTTTGCCCATTCA
AAAAGATAGGCCTTTTCTAGATAAAAGAACAGTGGCCAGAAATTTTGCTTTTTGCTAAAT
GCTTAGGTATTTGCCATAGCCGTTTCTAATGTCATGGATTCTGAGGAAGTGTCAGTTACA
CAATGATCTTCCTTTATTGATGTCTTACTTCATGTTCAGTGTTTTAAAAATATAAATTAC
ACTCTACATCCATACCCAGATTTACTTATTTTATCAGAAAAAACTTGAGAAATTTGTAGA
TCAAATTAAGAGACAATAAGTGTACATTGTTGAATAAAAAATTTTAAAGTTTCAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1256, gnl|bosTau2|chr19 (14299443-14300734)
               

               
               1-1256, gnl|Hg17|chr17 (24608262-24606980)
               

               
               1-1256, gnl|Mm7|chr11 (77798347-77799546)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1256, gnl|bosTau2|chr19 (14299443-14300734)
               

               
               1-1256, gnl|Hg17|chr17 (24608262-24606980)
               

               
               1-1256, gnl|Mm7|chr11 (77798347-77799546)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               mgp (0.461361)
               

               
               thg (0.380373)
               

               
               eye (0.341006)
               

               
               tra (0.246184)
               

               
               cbl (0.229595)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               clu (0.119646)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               thg (0.380373)
               

               
               eye (0.341006)
               

               
               tra (0.246184)
               

               
               cbl (0.229595)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               clu (0.119646)

	1-1256, gnl\|bosTau2\|chr19 (14299443-14300734)
	1-1256, gnl\|Hg17\|chr17 (24608262-24606980)
	1-1256, gnl\|Mm7\|chr11 (77798347-77799546)

	mgp (0.461361)
	thg (0.380373)
	eye (0.341006)
	tra (0.246184)
	cbl (0.229595)
	sag (0.182715)
	gul (0.177588)
	fty (0.17584)
	isp (0.150376)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	hyp (0.142837)
	clu (0.119646)