Non-Coding RNA Search

Ss1.1-Pig4-TMW8022K18.3.5

Sequence:


               
               CCATACATATCTATTTGAAATTAGCTTTTCAGTACCTTCACTTATTCATGATATAGTACA
TGTTTCTTTTCTTACTTCCTTTAGCTTATGCACTAAAACTTATGCTAGTTATTTAAAGGT
GAGCTCTTCTTCCTTAGTTTCAACCTTTTTATTATCATAGATCACTAACAAGCTCCATGA
TCCAGTTTTCAAGCCCTTGCCAAATAAGCTACACAAAACACAGGAGTGGAGTTCTCTTGT
GCAGCAGCAGGTTAAGGATCAAGCATTGCCACTGCAGTGGCTTGGGTGGCTGCTGTGGTA
CAGGTTCGATCCCTGGCTTAGGAACTTCCATATGCTGCAGGTGTGGCTAAAACAAACAAA
CAAAAACACAGGAGTCCCATTGCTATTTAATGTCAGGACAAATAGCCTTATGTTCAGTTA
CAACAGTGTATATTATGTACTTTAAAACATAATATATGTCAATGATGTATATAAACCCTT
AGTTATTTAAAAAAAAAAATGCAAGGTAACTCTTTACTGTTACTATTTAAGAAATAGGAG
CAATGACATAACTTGCAGAGAAGTCAAAATGGTGCTCCTAAAGGGTATACTCAGGTCTGC
TTGTGTACCCAGGAAGCAGCCTTCCAAACCAGGTTATACACCAGGTGCTTCAACTGTGGG
TGAGATTTAGATTTGATTTACTATGTGTAAATATGTGACTTGATTTATGTATAGAATTCC
TCCCTAGGGGAAGAGGTTATTCTAAGGGTTTTATTTGTTTTTGTTTTTCTTACCAATGTG
AGTAATACCAGTTAAGAGACCATTAGTGATTATTTTCCTCTGTAGGATATGGGGTAGCTC
TTTAGTTTATCACTGTAGTTATTGCTGTTATGATTTTAATTTTGTTACTTTCTAGAGTAC
CTAAAGCTGTATTTTTAAGAAAATTCTCATTTCCATTGTTACAGTGCACTTAGTGTAAAA
AAAAAAATCAAATAATTTTTAAAAAAGCACTGTTTTCAACTCCCCAGAGGTACCCACTTT
CAACTCTGTTGATTCTCACATTACTTATCTCCATATCATTAAACACCTTGCTTTATTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATACATATCTATTTGAAATTAGCTTTTCAGTACCTTCACTTATTCATGATATAGTACA
TGTTTCTTTTCTTACTTCCTTTAGCTTATGCACTAAAACTTATGCTAGTTATTTAAAGGT
GAGCTCTTCTTCCTTAGTTTCAACCTTTTTATTATCATAGATCACTAACAAGCTCCATGA
TCCAGTTTTCAAGCCCTTGCCAAATAAGCTACACAAAACACAGGAGTGGAGTTCTCTTGT
GCAGCAGCAGGTTAAGGATCAAGCATTGCCACTGCAGTGGCTTGGGTGGCTGCTGTGGTA
CAGGTTCGATCCCTGGCTTAGGAACTTCCATATGCTGCAGGTGTGGCTAAAACAAACAAA
CAAAAACACAGGAGTCCCATTGCTATTTAATGTCAGGACAAATAGCCTTATGTTCAGTTA
CAACAGTGTATATTATGTACTTTAAAACATAATATATGTCAATGATGTATATAAACCCTT
AGTTATTTAAAAAAAAAAATGCAAGGTAACTCTTTACTGTTACTATTTAAGAAATAGGAG
CAATGACATAACTTGCAGAGAAGTCAAAATGGTGCTCCTAAAGGGTATACTCAGGTCTGC
TTGTGTACCCAGGAAGCAGCCTTCCAAACCAGGTTATACACCAGGTGCTTCAACTGTGGG
TGAGATTTAGATTTGATTTACTATGTGTAAATATGTGACTTGATTTATGTATAGAATTCC
TCCCTAGGGGAAGAGGTTATTCTAAGGGTTTTATTTGTTTTTGTTTTTCTTACCAATGTG
AGTAATACCAGTTAAGAGACCATTAGTGATTATTTTCCTCTGTAGGATATGGGGTAGCTC
TTTAGTTTATCACTGTAGTTATTGCTGTTATGATTTTAATTTTGTTACTTTCTAGAGTAC
CTAAAGCTGTATTTTTAAGAAAATTCTCATTTCCATTGTTACAGTGCACTTAGTGTAAAA
AAAAAAATCAAATAATTTTTAAAAAAGCACTGTTTTCAACTCCCCAGAGGTACCCACTTT
CAACTCTGTTGATTCTCACATTACTTATCTCCATATCATTAAACACCTTGCTTTATTTTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               482-638, - strand, RNAz p=0.812235
               

               
               678-785, + strand, RNAz p=0.686301

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               482-638, - strand, RNAz p=0.812235
               

               
               678-785, + strand, RNAz p=0.686301

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-227, gnl|bosTau2|chr29 (22462696-22462469)
               

               
               1-227, gnl|canFam2|chr5 (11918003-11917776)
               

               
               1-227, gnl|echTel1|scaffold_196986 (4239-4347)
               

               
               1-227, gnl|hg17|chr11 (124996637-124996855)
               

               
               1-227, gnl|Hg17|chr11 (124996659-124996854)
               

               
               1-227, gnl|loxAfr1|scaffold_81278 (3676-3894)
               

               
               1-227, gnl|mm7|chr9 (36658546-36658316)
               

               
               1-227, gnl|Mm7|chr9 (36658526-36658221)
               

               
               1-227, gnl|oryCun1|scaffold_212105 (318826-319044)
               

               
               1-227, gnl|panTro1|chr9 (127078659-127078877)
               

               
               1-227, gnl|rheMac2|chr14 (123748623-123748842)
               

               
               1-227, gnl|rn3|chr8 (37989024-37988799)
               


               
               363-1080, gnl|bosTau2|chr29 (22462481-22461790)
               

               
               363-1080, gnl|Mm7|chr9 (36658233-36657541)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-227, gnl|bosTau2|chr29 (22462696-22462469)
               

               
               1-227, gnl|canFam2|chr5 (11918003-11917776)
               

               
               1-227, gnl|echTel1|scaffold_196986 (4239-4347)
               

               
               1-227, gnl|hg17|chr11 (124996637-124996855)
               

               
               1-227, gnl|Hg17|chr11 (124996659-124996854)
               

               
               1-227, gnl|loxAfr1|scaffold_81278 (3676-3894)
               

               
               1-227, gnl|mm7|chr9 (36658546-36658316)
               

               
               1-227, gnl|Mm7|chr9 (36658526-36658221)
               

               
               1-227, gnl|oryCun1|scaffold_212105 (318826-319044)
               

               
               1-227, gnl|panTro1|chr9 (127078659-127078877)
               

               
               1-227, gnl|rheMac2|chr14 (123748623-123748842)
               

               
               1-227, gnl|rn3|chr8 (37989024-37988799)
               


               
               363-1080, gnl|bosTau2|chr29 (22462481-22461790)
               

               
               363-1080, gnl|Mm7|chr9 (36658233-36657541)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               fat (0.294855)
               

               
               ute (0.265569)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               ute (0.265569)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	482-638, - strand, RNAz p=0.812235
	678-785, + strand, RNAz p=0.686301

	1-227, gnl\|bosTau2\|chr29 (22462696-22462469)
	1-227, gnl\|canFam2\|chr5 (11918003-11917776)
	1-227, gnl\|echTel1\|scaffold_196986 (4239-4347)
	1-227, gnl\|hg17\|chr11 (124996637-124996855)
	1-227, gnl\|Hg17\|chr11 (124996659-124996854)
	1-227, gnl\|loxAfr1\|scaffold_81278 (3676-3894)
	1-227, gnl\|mm7\|chr9 (36658546-36658316)
	1-227, gnl\|Mm7\|chr9 (36658526-36658221)
	1-227, gnl\|oryCun1\|scaffold_212105 (318826-319044)
	1-227, gnl\|panTro1\|chr9 (127078659-127078877)
	1-227, gnl\|rheMac2\|chr14 (123748623-123748842)
	1-227, gnl\|rn3\|chr8 (37989024-37988799)

	363-1080, gnl\|bosTau2\|chr29 (22462481-22461790)
	363-1080, gnl\|Mm7\|chr9 (36658233-36657541)

	fat (0.294855)
	ute (0.265569)
	mgm (0.180343)
	sin (0.174948)
	rec (0.17307)
	mga (0.160205)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	eru (0.120048)
	ecc (0.115035)