Non-Coding RNA Search

Ss1.1-Pig4-TMW8022K20.5

Sequence:


               
               GCGGCTCGAGACTGTATGGGAGGACGATCCAGATGTTTCAAAGAGAATTTCTCTTAGTTT
AGTTAGGTGTAATTCAGTAGCTTTAAATTCTCAGGTCAGAACATAACATTTCTCATTTGT
TTAAAAAAAAAAAAAAAAAAAGCAGCAAGAAGCCTGGTAAAACTGTGACTTTTCCCCAAA
TGTCAATCTTTATTAGAAAGCATTTTCTAGGTGTGTTTAGTGTACAAAGAGACTTTCTAA
CCCTTACTGGACAACACACAGATCCTTGAGCTCACGCTGCAGGATAGTACAGTTTTACCA
CAGAGGGAAAATCTAGAACAGTAGAATCATGTGTCTGCTCTGTGTATTGCAGTTTGTATT
GCCACAAGCTATATTTATACCAGTGTCACCCTTTTCTTGTAGAATATACTAATAATCTGT
GCCAACTCTACCTTCTCACTTTTACCTCTGATGTCATTCTTTTTTTTCTGGAAGAGGTAA
TAATTCTAGTTTTGATAGACTCTGAGGATTATGTGAACAGAATTATTACCTCTCCCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGACTGTATGGGAGGACGATCCAGATGTTTCAAAGAGAATTTCTCTTAGTTT
AGTTAGGTGTAATTCAGTAGCTTTAAATTCTCAGGTCAGAACATAACATTTCTCATTTGT
TTAAAAAAAAAAAAAAAAAAAGCAGCAAGAAGCCTGGTAAAACTGTGACTTTTCCCCAAA
TGTCAATCTTTATTAGAAAGCATTTTCTAGGTGTGTTTAGTGTACAAAGAGACTTTCTAA
CCCTTACTGGACAACACACAGATCCTTGAGCTCACGCTGCAGGATAGTACAGTTTTACCA
CAGAGGGAAAATCTAGAACAGTAGAATCATGTGTCTGCTCTGTGTATTGCAGTTTGTATT
GCCACAAGCTATATTTATACCAGTGTCACCCTTTTCTTGTAGAATATACTAATAATCTGT
GCCAACTCTACCTTCTCACTTTTACCTCTGATGTCATTCTTTTTTTTCTGGAAGAGGTAA
TAATTCTAGTTTTGATAGACTCTGAGGATTATGTGAACAGAATTATTACCTCTCCCCCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               251-369, - strand, RNAz p=0.531972

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-369, - strand, RNAz p=0.531972

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-527, gnl|bosTau2|chr28 (18647396-18646876)
               

               
               13-527, gnl|Hg17|chr8 (77939694-77940189)
               

               
               13-527, gnl|Mm7|chr3 (5419207-5419702)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-527, gnl|bosTau2|chr28 (18647396-18646876)
               

               
               13-527, gnl|Hg17|chr8 (77939694-77940189)
               

               
               13-527, gnl|Mm7|chr3 (5419207-5419702)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	13-527, gnl\|bosTau2\|chr28 (18647396-18646876)
	13-527, gnl\|Hg17\|chr8 (77939694-77940189)
	13-527, gnl\|Mm7\|chr3 (5419207-5419702)