Non-Coding RNA Search

Ss1.1-Pig4-TMW8022K23.3

Sequence:


               
               ACTCCCTGCTGGTGCGGGCGCTGGATCGCTTTCACCGGCGTTTGCGGGCACCCGGGGCCC
TGCTGGCCGCTGCGGGGCTGGCGGAGGCCGCCACAGAGATCGTGGAGCGAGTGGCGCGCG
AACGCCTGGGCCACCACCTGCAGAGCCTGCAGGCTGCCTTCCTGGGCTGCCTGACCGATG
TGCGGCAGGCGCTGGCCGCGCCTCGAATTGCTGGGAAGGAAGGCCCCGGCCTGGCTGAGT
TGCTGGCCAATGTGGCCACCTCCATCCTGAGCCACATAAAGGCTTCGCTGGCCTCCGTGC
ACCTCTTCACTGCCAAGGAGGTGTCCTTCTCCAACAAGCCCTACTTCCGGGGCGAGTTCT
GCAGCCAGGGCGTCCGGGAGGGCCTCATCGTGGGCTTCATCCGCTCCATGTGCCAGACGG
CTCAGAGCTTCTGTGACAGCCCCGGGGAGAAGGGGGGTGCCACGCCACCTGCCCTGCTCC
TGCTGCTCTCCCGCCTCTGTCTGGACTACGAGACAGCCACCATCTCCTACATCCTCACCC
TCACTGATGAACAGTTCCTGGTGCAGGACCAGTCTCCAGTGACACCTGTGAGCACACTGT
GTGCAGAGGCCAGGGAGACGGCGCGGCGGCTGCTGACTCACTACGTGAAGGTGCAGGGCC
TGGTCATATCGCAGATGCTGCGCAAGAGTGTGGAGACGCGGGACTGGCTCAGTAGCCTGG
AGCCTCGGAACGTGCGTGCTGTCATGAAGCGGGTGGTGGAGGACACGACAGCTATCGACG
TGCAGGTGGGGCTCCTGTATGAAGAGGGTGTTCGCAAGGCCCAGAGCAGTGACTCCAGCA
AGAGGACCTTCTCGGTTTATAGCAGCTCTCGACAGCAGGGACGCTATGCACCCAGCTATA
CACCCAGTGCCCCAATGGACACCAACCTCTTGAGCAACATCCAGAAGCTGTTCTCTGAAC
GTATTGACGTGTTCAGCCCTGTGGAGTTCAATAAGGTGTCAGTGCTGACCGGCATCATCA
AGATCAGCCTGAAGACGCTGCTAGAATGTGTGCGGCTGCGCACCTTTGGGCGCTTCGGGC
TGCAGCAGGTGCAGGTGGACTGCCACTTCCTGCAGCTCTACCTGTGGCGCTTTGTGGCCG
ATGAGGAGCTTGTGCACCTGCTGCTGGATGAAGTGGTGGCCTCAGCTGCCTTGCGCTGCC
CAGACCCAGTGCCCATGGAACCCAGTGTCGTTGAGGTCATCTGTGAGCGAGGCTAGGCCT
GGTGGTGGCCATACGCCCACTTGCGAGGTCGCCCCACACGCATTCCCTGGCCTCCCGCCC
CAGCGGCTCTTCCCCTCAGGCCTCAAGACCTGCCTAATAAAGACGTGTTGTCTCTGCAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCCCTGCTGGTGCGGGCGCTGGATCGCTTTCACCGGCGTTTGCGGGCACCCGGGGCCC
TGCTGGCCGCTGCGGGGCTGGCGGAGGCCGCCACAGAGATCGTGGAGCGAGTGGCGCGCG
AACGCCTGGGCCACCACCTGCAGAGCCTGCAGGCTGCCTTCCTGGGCTGCCTGACCGATG
TGCGGCAGGCGCTGGCCGCGCCTCGAATTGCTGGGAAGGAAGGCCCCGGCCTGGCTGAGT
TGCTGGCCAATGTGGCCACCTCCATCCTGAGCCACATAAAGGCTTCGCTGGCCTCCGTGC
ACCTCTTCACTGCCAAGGAGGTGTCCTTCTCCAACAAGCCCTACTTCCGGGGCGAGTTCT
GCAGCCAGGGCGTCCGGGAGGGCCTCATCGTGGGCTTCATCCGCTCCATGTGCCAGACGG
CTCAGAGCTTCTGTGACAGCCCCGGGGAGAAGGGGGGTGCCACGCCACCTGCCCTGCTCC
TGCTGCTCTCCCGCCTCTGTCTGGACTACGAGACAGCCACCATCTCCTACATCCTCACCC
TCACTGATGAACAGTTCCTGGTGCAGGACCAGTCTCCAGTGACACCTGTGAGCACACTGT
GTGCAGAGGCCAGGGAGACGGCGCGGCGGCTGCTGACTCACTACGTGAAGGTGCAGGGCC
TGGTCATATCGCAGATGCTGCGCAAGAGTGTGGAGACGCGGGACTGGCTCAGTAGCCTGG
AGCCTCGGAACGTGCGTGCTGTCATGAAGCGGGTGGTGGAGGACACGACAGCTATCGACG
TGCAGGTGGGGCTCCTGTATGAAGAGGGTGTTCGCAAGGCCCAGAGCAGTGACTCCAGCA
AGAGGACCTTCTCGGTTTATAGCAGCTCTCGACAGCAGGGACGCTATGCACCCAGCTATA
CACCCAGTGCCCCAATGGACACCAACCTCTTGAGCAACATCCAGAAGCTGTTCTCTGAAC
GTATTGACGTGTTCAGCCCTGTGGAGTTCAATAAGGTGTCAGTGCTGACCGGCATCATCA
AGATCAGCCTGAAGACGCTGCTAGAATGTGTGCGGCTGCGCACCTTTGGGCGCTTCGGGC
TGCAGCAGGTGCAGGTGGACTGCCACTTCCTGCAGCTCTACCTGTGGCGCTTTGTGGCCG
ATGAGGAGCTTGTGCACCTGCTGCTGGATGAAGTGGTGGCCTCAGCTGCCTTGCGCTGCC
CAGACCCAGTGCCCATGGAACCCAGTGTCGTTGAGGTCATCTGTGAGCGAGGCTAGGCCT
GGTGGTGGCCATACGCCCACTTGCGAGGTCGCCCCACACGCATTCCCTGGCCTCCCGCCC
CAGCGGCTCTTCCCCTCAGGCCTCAAGACCTGCCTAATAAAGACGTGTTGTCTCTGCAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PJV5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PJV5_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               154-351, - strand, RNAz p=0.899333
               

               
               994-1192, + strand, RNAz p=0.998672

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-351, - strand, RNAz p=0.899333
               

               
               994-1192, + strand, RNAz p=0.998672

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               35-351, gnl|bosTau2|chr29 (34231799-34232115)
               

               
               35-351, gnl|Hg17|chr11 (64632649-64632963)
               

               
               35-351, gnl|Mm7|chr19 (5965558-5965244)
               


               
               559-795, gnl|bosTau2|chr29 (34233114-34233350)
               

               
               559-795, gnl|Hg17|chr11 (64633745-64633980)
               

               
               559-795, gnl|Mm7|chr19 (5964497-5964261)
               


               
               994-1374, gnl|bosTau2|chr29 (34234672-34235055)
               

               
               994-1374, gnl|Hg17|chr11 (64635373-64635753)
               

               
               994-1374, gnl|Mm7|chr19 (5963183-5962800)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-351, gnl|bosTau2|chr29 (34231799-34232115)
               

               
               35-351, gnl|Hg17|chr11 (64632649-64632963)
               

               
               35-351, gnl|Mm7|chr19 (5965558-5965244)
               


               
               559-795, gnl|bosTau2|chr29 (34233114-34233350)
               

               
               559-795, gnl|Hg17|chr11 (64633745-64633980)
               

               
               559-795, gnl|Mm7|chr19 (5964497-5964261)
               


               
               994-1374, gnl|bosTau2|chr29 (34234672-34235055)
               

               
               994-1374, gnl|Hg17|chr11 (64635373-64635753)
               

               
               994-1374, gnl|Mm7|chr19 (5963183-5962800)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               cli (0.305623)
               

               
               pty (0.285429)
               

               
               cov (0.264306)
               

               
               eje (0.197668)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               pty (0.285429)
               

               
               cov (0.264306)
               

               
               eje (0.197668)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	154-351, - strand, RNAz p=0.899333
	994-1192, + strand, RNAz p=0.998672

	35-351, gnl\|bosTau2\|chr29 (34231799-34232115)
	35-351, gnl\|Hg17\|chr11 (64632649-64632963)
	35-351, gnl\|Mm7\|chr19 (5965558-5965244)

	559-795, gnl\|bosTau2\|chr29 (34233114-34233350)
	559-795, gnl\|Hg17\|chr11 (64633745-64633980)
	559-795, gnl\|Mm7\|chr19 (5964497-5964261)

	994-1374, gnl\|bosTau2\|chr29 (34234672-34235055)
	994-1374, gnl\|Hg17\|chr11 (64635373-64635753)
	994-1374, gnl\|Mm7\|chr19 (5963183-5962800)

	cli (0.305623)
	pty (0.285429)
	cov (0.264306)
	eje (0.197668)
	ill (0.175593)
	mcp (0.170648)
	cki (0.165235)
	csp (0.161186)
	cag (0.151194)
	hlv (0.139256)
	ute (0.132784)
	sug (0.127291)
	ese (0.126502)
	eep (0.122564)
	ebs (0.118301)
	med (0.116252)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)