Ss1.1-Pig4-TMW8022L09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCGATGTGTGGTGGATTGTCCATGACGGTGGCATGCTCATGCTCTTACCCTTCCTGCTG CGCCAGCACAAGGTTTGGAGGAAGTGCCGCATGCGCATTTTCACAGTGGCCCAGATGGAT GACAACAGCATCCAAATGAAGAAGGATCTGGCCATCTTCCTGTACCACCTACGTCTTGAA GCCGAAGTGGAGGTGGTGGAAATGCCTAACAGCGACATCTCTGCATACACCTATGAGCGG ACGCTGATGATGGAGCAGCGCTCCCAGATGCTGCGGCAGATGAGGTTGACTAAGACTGAG CGGGAGCGAGAGGCCCAGCTGGTCAAGGACCGGCACTCAGCCCTGCGGCTGGAGAGCCTG TACTCAGATGAGGAGGACGAGTCTGCAGCTGGGACTGACAAGATCCAGATGACATGGACT CGAGACAAGTACATGGAGGCCGAACCCTGGGACCCCAGCCACACCCCTGACAACTTCCGG GAGCTGGTGCATATTAAGCCGGACCAATCCAATGTGCGACGCATGCACACGGCTGTGAAG CTCAATGAAGTCATTGTCACACGCTCCCATGACGCCCGCCTAGTCCTGCTGAACATGCCG GGCCCACCCAAGAACAGTGAAGGCGATGAGAACTACATGGAGTTCCTGGAAGTGCTGACC GAGGGCCTCGAACGGGTGCTGTTGGTACGCGGCGGTGGCCGGGAAGTCATCACCATCTAC TCCTGAGCCCAGTACAGACTTGCGGCTTAGAGTAGAGGTGTCCAGGGTAACAAACAGCTC CCTCCCAGCACCCACCCACCAGCTCTGCTTTGCCCTGCCCTGCCCTGGACCCAGCTTTGC TAGGTCTCCTTGGAGACCGGGCCCAGGCCTGGCAATGGAGATGGAGCCGAGGTCCTGTAG GACCCTGAGAGTTTTGGGGACTTTCCGGTCCGCAAGAACCCCAGGTTGCCTGTCCTGACC GGAGAAGACTGGTAGGGACTGTTGTGGGCTCTGAAGGCAGCTGGCCCAGGAGCACTATTT ATTGCATATTTATTGTTCAAATGTCACTATCAGAGAGGAGGGGACGGACAAGGGAGGGTG TCTAGCCAAGTGCGCCTGCAGGAAGATCTGGCTCAGGCTACTGTGGGCAGGGACCCCCAC CAAGCCAAGCTGAATGGAACCAGCCAACTGAAGCCTGACTTTTCAATAAAAACACTGTGT ACTTCTGGGCAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCGATGTGTGGTGGATTGTCCATGACGGTGGCATGCTCATGCTCTTACCCTTCCTGCTG CGCCAGCACAAGGTTTGGAGGAAGTGCCGCATGCGCATTTTCACAGTGGCCCAGATGGAT GACAACAGCATCCAAATGAAGAAGGATCTGGCCATCTTCCTGTACCACCTACGTCTTGAA GCCGAAGTGGAGGTGGTGGAAATGCCTAACAGCGACATCTCTGCATACACCTATGAGCGG ACGCTGATGATGGAGCAGCGCTCCCAGATGCTGCGGCAGATGAGGTTGACTAAGACTGAG CGGGAGCGAGAGGCCCAGCTGGTCAAGGACCGGCACTCAGCCCTGCGGCTGGAGAGCCTG TACTCAGATGAGGAGGACGAGTCTGCAGCTGGGACTGACAAGATCCAGATGACATGGACT CGAGACAAGTACATGGAGGCCGAACCCTGGGACCCCAGCCACACCCCTGACAACTTCCGG GAGCTGGTGCATATTAAGCCGGACCAATCCAATGTGCGACGCATGCACACGGCTGTGAAG CTCAATGAAGTCATTGTCACACGCTCCCATGACGCCCGCCTAGTCCTGCTGAACATGCCG GGCCCACCCAAGAACAGTGAAGGCGATGAGAACTACATGGAGTTCCTGGAAGTGCTGACC GAGGGCCTCGAACGGGTGCTGTTGGTACGCGGCGGTGGCCGGGAAGTCATCACCATCTAC TCCTGAGCCCAGTACAGACTTGCGGCTTAGAGTAGAGGTGTCCAGGGTAACAAACAGCTC CCTCCCAGCACCCACCCACCAGCTCTGCTTTGCCCTGCCCTGCCCTGGACCCAGCTTTGC TAGGTCTCCTTGGAGACCGGGCCCAGGCCTGGCAATGGAGATGGAGCCGAGGTCCTGTAG GACCCTGAGAGTTTTGGGGACTTTCCGGTCCGCAAGAACCCCAGGTTGCCTGTCCTGACC GGAGAAGACTGGTAGGGACTGTTGTGGGCTCTGAAGGCAGCTGGCCCAGGAGCACTATTT ATTGCATATTTATTGTTCAAATGTCACTATCAGAGAGGAGGGGACGGACAAGGGAGGGTG TCTAGCCAAGTGCGCCTGCAGGAAGATCTGGCTCAGGCTACTGTGGGCAGGGACCCCCAC CAAGCCAAGCTGAATGGAACCAGCCAACTGAAGCCTGACTTTTCAATAAAAACACTGTGT ACTTCTGGGCAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 753-931, - strand, RNAz p=0.998952 | |
| 1071-1187, - strand, RNAz p=0.751184 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 753-931, - strand, RNAz p=0.998952 | |
| 1071-1187, - strand, RNAz p=0.751184 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 71-204, gnl|bosTau2|chr10 (17355347-17355480) | |
| 71-204, gnl|canFam2|chr30 (3845422-3845315) | |
| 71-204, gnl|danRer3|chr7 (23443866-23443973) | |
| 71-204, gnl|dasNov1|scaffold_20309 (9983-9876) | |
| 71-204, gnl|echTel1|scaffold_301365 (11647-11754) | |
| 71-204, gnl|fr1|chrUn (16862930-16862823) | |
| 71-204, gnl|galGal2|chr11 (3393257-3393150) | |
| 71-204, gnl|hg17|chr15 (32316909-32317016) | |
| 71-204, gnl|Hg17|chr15 (32317045-32316912) | |
| 71-204, gnl|loxAfr1|scaffold_347 (32174-32067) | |
| 71-204, gnl|mm7|chr2 (112206834-112206727) | |
| 71-204, gnl|Mm7|chr2 (112206696-112206829) | |
| 71-204, gnl|monDom2|scaffold_12 (12080040-12080147) | |
| 71-204, gnl|oryCun1|scaffold_213414 (34585-34478) | |
| 71-204, gnl|panTro1|chr16 (31953698-31953805) | |
| 71-204, gnl|rheMac2|chr7 (12481433-12481540) | |
| 71-204, gnl|rn3|chr3 (98101786-98101679) | |
| 71-204, gnl|tetNig1|chrUn_random (92603103-92602998) | |
| 71-204, gnl|xenTro1|scaffold_339 (1156619-1156512) | |
| 311-501, gnl|bosTau2|chr18 (14931391-14931581) | |
| 311-501, gnl|canFam2|chr34 (14442373-14442176) | |
| 311-501, gnl|canFam2|chr5 (84562698-84562465) | |
| 311-501, gnl|danRer3|chr24 (33533215-33533410) | |
| 311-501, gnl|danRer3|chr7 (23441032-23441264) | |
| 311-501, gnl|dasNov1|scaffold_141170 (247-458) | |
| 311-501, gnl|dasNov1|scaffold_19313 (54802-55034) | |
| 311-501, gnl|echTel1|scaffold_324580 (47934-48151) | |
| 311-501, gnl|echTel1|scaffold_324580 (47936-48152) | |
| 311-501, gnl|fr1|chrUn (16863521-16863304) | |
| 311-501, gnl|fr1|chrUn (208385972-208385766) | |
| 311-501, gnl|galGal2|chr11 (3394447-3394241) | |
| 311-501, gnl|galGal2|chr2 (55363222-55363027) | |
| 311-501, gnl|hg17|chr16 (66536744-66536974) | |
| 311-501, gnl|Hg17|chr16 (66536959-66536772) | |
| 311-501, gnl|hg17|chr5 (1110572-1110773) | |
| 311-501, gnl|loxAfr1|scaffold_230165 (663-872) | |
| 311-501, gnl|loxAfr1|scaffold_347 (33300-33094) | |
| 311-501, gnl|mm7|chr13 (70742939-70742742) | |
| 311-501, gnl|mm7|chr8 (104543358-104543578) | |
| 311-501, gnl|Mm7|chr8 (104543563-104543376) | |
| 311-501, gnl|monDom2|scaffold_23 (18209223-18208997) | |
| 311-501, gnl|monDom2|scaffold_23 (18209201-18208999) | |
| 311-501, gnl|oryCun1|scaffold_204307 (26753-26524) | |
| 311-501, gnl|oryCun1|scaffold_204307 (26738-26537) | |
| 311-501, gnl|panTro1|chr18 (60834082-60834312) | |
| 311-501, gnl|panTro1|chr4 (1132829-1133014) | |
| 311-501, gnl|rheMac2|chr20 (66280780-66281010) | |
| 311-501, gnl|rheMac2|chr6 (748496-748697) | |
| 311-501, gnl|rn3|chr1 (30290394-30290591) | |
| 311-501, gnl|rn3|chr19 (35790977-35791197) | |
| 311-501, gnl|tetNig1|chrUn_random (92604257-92604015) | |
| 311-501, gnl|tetNig1|chrUn_random (134565345-134565529) | |
| 311-501, gnl|xenTro1|scaffold_131 (1352507-1352712) | |
| 311-501, gnl|xenTro1|scaffold_860 (336489-336292) | |
| 635-1210, gnl|bosTau2|chr18 (14932010-14932584) | |
| 635-1210, gnl|Hg17|chr16 (66536335-66535731) | |
| 635-1210, gnl|Mm7|chr8 (104543028-104542446) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 71-204, gnl|bosTau2|chr10 (17355347-17355480) | |
| 71-204, gnl|canFam2|chr30 (3845422-3845315) | |
| 71-204, gnl|danRer3|chr7 (23443866-23443973) | |
| 71-204, gnl|dasNov1|scaffold_20309 (9983-9876) | |
| 71-204, gnl|echTel1|scaffold_301365 (11647-11754) | |
| 71-204, gnl|fr1|chrUn (16862930-16862823) | |
| 71-204, gnl|galGal2|chr11 (3393257-3393150) | |
| 71-204, gnl|hg17|chr15 (32316909-32317016) | |
| 71-204, gnl|Hg17|chr15 (32317045-32316912) | |
| 71-204, gnl|loxAfr1|scaffold_347 (32174-32067) | |
| 71-204, gnl|mm7|chr2 (112206834-112206727) | |
| 71-204, gnl|Mm7|chr2 (112206696-112206829) | |
| 71-204, gnl|monDom2|scaffold_12 (12080040-12080147) | |
| 71-204, gnl|oryCun1|scaffold_213414 (34585-34478) | |
| 71-204, gnl|panTro1|chr16 (31953698-31953805) | |
| 71-204, gnl|rheMac2|chr7 (12481433-12481540) | |
| 71-204, gnl|rn3|chr3 (98101786-98101679) | |
| 71-204, gnl|tetNig1|chrUn_random (92603103-92602998) | |
| 71-204, gnl|xenTro1|scaffold_339 (1156619-1156512) | |
| 311-501, gnl|bosTau2|chr18 (14931391-14931581) | |
| 311-501, gnl|canFam2|chr34 (14442373-14442176) | |
| 311-501, gnl|canFam2|chr5 (84562698-84562465) | |
| 311-501, gnl|danRer3|chr24 (33533215-33533410) | |
| 311-501, gnl|danRer3|chr7 (23441032-23441264) | |
| 311-501, gnl|dasNov1|scaffold_141170 (247-458) | |
| 311-501, gnl|dasNov1|scaffold_19313 (54802-55034) | |
| 311-501, gnl|echTel1|scaffold_324580 (47934-48151) | |
| 311-501, gnl|echTel1|scaffold_324580 (47936-48152) | |
| 311-501, gnl|fr1|chrUn (16863521-16863304) | |
| 311-501, gnl|fr1|chrUn (208385972-208385766) | |
| 311-501, gnl|galGal2|chr11 (3394447-3394241) | |
| 311-501, gnl|galGal2|chr2 (55363222-55363027) | |
| 311-501, gnl|hg17|chr16 (66536744-66536974) | |
| 311-501, gnl|Hg17|chr16 (66536959-66536772) | |
| 311-501, gnl|hg17|chr5 (1110572-1110773) | |
| 311-501, gnl|loxAfr1|scaffold_230165 (663-872) | |
| 311-501, gnl|loxAfr1|scaffold_347 (33300-33094) | |
| 311-501, gnl|mm7|chr13 (70742939-70742742) | |
| 311-501, gnl|mm7|chr8 (104543358-104543578) | |
| 311-501, gnl|Mm7|chr8 (104543563-104543376) | |
| 311-501, gnl|monDom2|scaffold_23 (18209223-18208997) | |
| 311-501, gnl|monDom2|scaffold_23 (18209201-18208999) | |
| 311-501, gnl|oryCun1|scaffold_204307 (26753-26524) | |
| 311-501, gnl|oryCun1|scaffold_204307 (26738-26537) | |
| 311-501, gnl|panTro1|chr18 (60834082-60834312) | |
| 311-501, gnl|panTro1|chr4 (1132829-1133014) | |
| 311-501, gnl|rheMac2|chr20 (66280780-66281010) | |
| 311-501, gnl|rheMac2|chr6 (748496-748697) | |
| 311-501, gnl|rn3|chr1 (30290394-30290591) | |
| 311-501, gnl|rn3|chr19 (35790977-35791197) | |
| 311-501, gnl|tetNig1|chrUn_random (92604257-92604015) | |
| 311-501, gnl|tetNig1|chrUn_random (134565345-134565529) | |
| 311-501, gnl|xenTro1|scaffold_131 (1352507-1352712) | |
| 311-501, gnl|xenTro1|scaffold_860 (336489-336292) | |
| 635-1210, gnl|bosTau2|chr18 (14932010-14932584) | |
| 635-1210, gnl|Hg17|chr16 (66536335-66535731) | |
| 635-1210, gnl|Mm7|chr8 (104543028-104542446) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fhi (0.339155) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| cov (0.132153) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.339155) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| cov (0.132153) |