Non-Coding RNA Search

Ss1.1-Pig4-TMW8022M06.3

Sequence:


               
               AAAAGACCAAAAAAAAAAAAAAAAACAGTGCAGCACTTCTTTCCCCGTGTCCATGGCTCT
TGGGGTCTCAGTGATGCCAGAAGGGAGTCTGATTGTAATGGAAATGGCAATTCCTAAGGT
AGTGCTTTTCCCCATGCTGTCAGGTTCTTACGCCTCCGAACCCTTCCCTTCTCCCTGGCC
TCTGGATGGTTCCTTAGAAGTTGGGCTCCCAGCCCCTCCCTTGGCTGGGCCAGAGCCCTT
TACTGCTGAGGCAGCACTGCTCGTGTCAACTGTGCTGCTCTTACCAAATGTCTTCAGAGG
GGGATGAGCTGGAGTGCTGGCCTGGGGAGCAGGCGCCTCCCTGGGTTTGATCTTTAGGGT
CCGACTTTCTTCAAGGAAGATGTTTTACAGATGTGTCAGGCCGATGTGGTAATGTGGTTG
GGGAAGGAGCTGCAGACCCAAAGTGTGTGCCAGCTGGGTGTGCGACTGTGTGAGCCTCAG
TCTTGAAATGATTTCTCTGTACTGGGAAACAAGGTGAGGTGTTTTCATTTTTTGTGAAAA
TGTAAAACTGTGTTCTTTTGATGGGATGATTCGCAATGATCATTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGACCAAAAAAAAAAAAAAAAACAGTGCAGCACTTCTTTCCCCGTGTCCATGGCTCT
TGGGGTCTCAGTGATGCCAGAAGGGAGTCTGATTGTAATGGAAATGGCAATTCCTAAGGT
AGTGCTTTTCCCCATGCTGTCAGGTTCTTACGCCTCCGAACCCTTCCCTTCTCCCTGGCC
TCTGGATGGTTCCTTAGAAGTTGGGCTCCCAGCCCCTCCCTTGGCTGGGCCAGAGCCCTT
TACTGCTGAGGCAGCACTGCTCGTGTCAACTGTGCTGCTCTTACCAAATGTCTTCAGAGG
GGGATGAGCTGGAGTGCTGGCCTGGGGAGCAGGCGCCTCCCTGGGTTTGATCTTTAGGGT
CCGACTTTCTTCAAGGAAGATGTTTTACAGATGTGTCAGGCCGATGTGGTAATGTGGTTG
GGGAAGGAGCTGCAGACCCAAAGTGTGTGCCAGCTGGGTGTGCGACTGTGTGAGCCTCAG
TCTTGAAATGATTTCTCTGTACTGGGAAACAAGGTGAGGTGTTTTCATTTTTTGTGAAAA
TGTAAAACTGTGTTCTTTTGATGGGATGATTCGCAATGATCATTGTTT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               144-413, - strand, RNAz p=0.99225
               

               
               167-290, - strand, RNAz p=0.990204
               

               
               351-456, - strand, RNAz p=0.549254

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               144-413, - strand, RNAz p=0.99225
               

               
               167-290, - strand, RNAz p=0.990204
               

               
               351-456, - strand, RNAz p=0.549254

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               287-420, + strand, RNAmicro p=0.999972

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               287-420, + strand, RNAmicro p=0.999972

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               33-588, gnl|bosTau2|chr23 (10122155-10122716)
               

               
               33-588, gnl|canFam2|chr12 (8979659-8980194)
               

               
               33-588, gnl|dasNov1|scaffold_18885 (78262-78810)
               

               
               33-588, gnl|echTel1|scaffold_300871 (4955-4538)
               

               
               33-588, gnl|hg17|chr6 (36999754-37000299)
               

               
               33-588, gnl|Hg17|chr6 (36999756-37000337)
               

               
               33-588, gnl|loxAfr1|scaffold_23888 (26515-27025)
               

               
               33-588, gnl|mm7|chr17 (27494302-27494761)
               

               
               33-588, gnl|monDom2|scaffold_42 (9437965-9437490)
               

               
               33-588, gnl|oryCun1|scaffold_106959 (7816-8249)
               

               
               33-588, gnl|panTro1|chr5 (37475306-37475851)
               

               
               33-588, gnl|rheMac2|chr4 (36678239-36678787)
               

               
               33-588, gnl|rn3|chr20 (7611077-7611509)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-588, gnl|bosTau2|chr23 (10122155-10122716)
               

               
               33-588, gnl|canFam2|chr12 (8979659-8980194)
               

               
               33-588, gnl|dasNov1|scaffold_18885 (78262-78810)
               

               
               33-588, gnl|echTel1|scaffold_300871 (4955-4538)
               

               
               33-588, gnl|hg17|chr6 (36999754-37000299)
               

               
               33-588, gnl|Hg17|chr6 (36999756-37000337)
               

               
               33-588, gnl|loxAfr1|scaffold_23888 (26515-27025)
               

               
               33-588, gnl|mm7|chr17 (27494302-27494761)
               

               
               33-588, gnl|monDom2|scaffold_42 (9437965-9437490)
               

               
               33-588, gnl|oryCun1|scaffold_106959 (7816-8249)
               

               
               33-588, gnl|panTro1|chr5 (37475306-37475851)
               

               
               33-588, gnl|rheMac2|chr4 (36678239-36678787)
               

               
               33-588, gnl|rn3|chr20 (7611077-7611509)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fbs (0.175346)
               

               
               cag (0.151194)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               cag (0.151194)
               

               
               eru (0.120048)

	144-413, - strand, RNAz p=0.99225
	167-290, - strand, RNAz p=0.990204
	351-456, - strand, RNAz p=0.549254

	33-588, gnl\|bosTau2\|chr23 (10122155-10122716)
	33-588, gnl\|canFam2\|chr12 (8979659-8980194)
	33-588, gnl\|dasNov1\|scaffold_18885 (78262-78810)
	33-588, gnl\|echTel1\|scaffold_300871 (4955-4538)
	33-588, gnl\|hg17\|chr6 (36999754-37000299)
	33-588, gnl\|Hg17\|chr6 (36999756-37000337)
	33-588, gnl\|loxAfr1\|scaffold_23888 (26515-27025)
	33-588, gnl\|mm7\|chr17 (27494302-27494761)
	33-588, gnl\|monDom2\|scaffold_42 (9437965-9437490)
	33-588, gnl\|oryCun1\|scaffold_106959 (7816-8249)
	33-588, gnl\|panTro1\|chr5 (37475306-37475851)
	33-588, gnl\|rheMac2\|chr4 (36678239-36678787)
	33-588, gnl\|rn3\|chr20 (7611077-7611509)