Ss1.1-Pig4-TMW8022M08.5
|
TTTGTAAAAAGCAGCTTGCTCCTTTATTTGTTTAGAAGAGTGTCCCCCTCCCCCAACCCT
TACCACCCTGCAAACTGGGCACATGCAATCTGGGAACAATAGCTGGCCACGGGACCCTCT
GCAGCTGGGCCTGGGGAGTCAGTTTTGAGGCAGAAGCTCGAGGTCCAAGGGGGCTGGGGT
ACAGAATCAGGCACTGCGGTGAAGGGGAGTGGCACAGCTAGCACAGCAGAGACTCCCAGG
GCCGCCTTGCTCCTGGGGACACTGAGGGGGCGGCCCATGTCCCGCTGGCCCAGGACCAGA
GCTTGGGACCTCAGGAGTATCTGCAGACGGCTAGGAGCCCGCCAGGTGCTGGTGGAAGTA
CAGGCCAAAGAGGCTGGAGAGCAGTTGGCAGGCGGCGATCCACCAGATGAGGAAGGCGAG
GACGCCACGGAGGAAGAGGGGCGTGAGCAGGCTGCCCAGGGCCCCAGCGATCAGGGCAGC
AGTTTGCTGGACCTCGTCCTCCTCCGGGCCAACCGGGCCATCGCGGGCTGAGGATGGGGT
AGGAGACAGCGAGGGGACCGGGCCCAGACCCCAGGAGTAGCCACCCAGCGTCTTGAGCAG
CAGCGTGCAGTTGAGGGTGAGGATGAGCGGCGTCAGGTACTGCAGACTCACAACCGTCAC
GTAGCAGTACACCCGCACCACCCGCCGCTGGATCTCGCGGGCCTCGATGCGGCCAGCCTC
CCGCCGCAGCTGCTCCACGCGCGACTTGGCCAGGCACAGGTAGGCCTGCAGGTGGGGACG
GGTCACTGCTAGCCGCAGCAAGCACAGTGCCACCAGCACCCAGAGGCGCAGCGAGTCAAA
AGCCGAGTCCGACAGCAGAGAGACCGTAGTGCTCCCAAAGGGCGCCTGGTGCAGGAAGTC
CCGCGCAATGGGCTTGGTCCAGAACCACAGGACGAACAGGGGGGACAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTGTAAAAAGCAGCTTGCTCCTTTATTTGTTTAGAAGAGTGTCCCCCTCCCCCAACCCT
TACCACCCTGCAAACTGGGCACATGCAATCTGGGAACAATAGCTGGCCACGGGACCCTCT
GCAGCTGGGCCTGGGGAGTCAGTTTTGAGGCAGAAGCTCGAGGTCCAAGGGGGCTGGGGT
ACAGAATCAGGCACTGCGGTGAAGGGGAGTGGCACAGCTAGCACAGCAGAGACTCCCAGG
GCCGCCTTGCTCCTGGGGACACTGAGGGGGCGGCCCATGTCCCGCTGGCCCAGGACCAGA
GCTTGGGACCTCAGGAGTATCTGCAGACGGCTAGGAGCCCGCCAGGTGCTGGTGGAAGTA
CAGGCCAAAGAGGCTGGAGAGCAGTTGGCAGGCGGCGATCCACCAGATGAGGAAGGCGAG
GACGCCACGGAGGAAGAGGGGCGTGAGCAGGCTGCCCAGGGCCCCAGCGATCAGGGCAGC
AGTTTGCTGGACCTCGTCCTCCTCCGGGCCAACCGGGCCATCGCGGGCTGAGGATGGGGT
AGGAGACAGCGAGGGGACCGGGCCCAGACCCCAGGAGTAGCCACCCAGCGTCTTGAGCAG
CAGCGTGCAGTTGAGGGTGAGGATGAGCGGCGTCAGGTACTGCAGACTCACAACCGTCAC
GTAGCAGTACACCCGCACCACCCGCCGCTGGATCTCGCGGGCCTCGATGCGGCCAGCCTC
CCGCCGCAGCTGCTCCACGCGCGACTTGGCCAGGCACAGGTAGGCCTGCAGGTGGGGACG
GGTCACTGCTAGCCGCAGCAAGCACAGTGCCACCAGCACCCAGAGGCGCAGCGAGTCAAA
AGCCGAGTCCGACAGCAGAGAGACCGTAGTGCTCCCAAAGGGCGCCTGGTGCAGGAAGTC
CCGCGCAATGGGCTTGGTCCAGAACCACAGGACGAACAGGGGGGACAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
426-558, + strand, RNAmicro p=0.98833 |
|
419-562, - strand, RNAmicro p=0.940299 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
426-558, + strand, RNAmicro p=0.98833 |
|
419-562, - strand, RNAmicro p=0.940299 |
|
1-585, gnl|bosTau2|chr7 (2573832-2574409) |
|
1-585, gnl|Hg17|chr19 (19091426-19091993) |
| |
|
680-856, gnl|bosTau2|chr7 (2574966-2575142) |
|
680-856, gnl|canFam2|chr20 (47039810-47039622) |
|
680-856, gnl|danRer3|chr22 (25208009-25207821) |
|
680-856, gnl|dasNov1|scaffold_54517 (4431-4582) |
|
680-856, gnl|fr1|chrUn (251220321-251220133) |
|
680-856, gnl|hg17|chr19 (19092800-19092988) |
|
680-856, gnl|Hg17|chr19 (19092799-19092975) |
|
680-856, gnl|loxAfr1|scaffold_66225 (209-397) |
|
680-856, gnl|mm7|chr8 (68636530-68636335) |
|
680-856, gnl|Mm7|chr8 (68636529-68636353) |
|
680-856, gnl|monDom2|scaffold_75 (1967673-1967851) |
|
680-856, gnl|panTro1|chr20 (20167073-20167261) |
|
680-856, gnl|rheMac2|chr19 (18760222-18760410) |
|
680-856, gnl|rn3|chr16 (19722983-19723178) |
|
680-856, gnl|tetNig1|chr1_random (3368188-3368373) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-585, gnl|bosTau2|chr7 (2573832-2574409) |
|
1-585, gnl|Hg17|chr19 (19091426-19091993) |
| |
|
680-856, gnl|bosTau2|chr7 (2574966-2575142) |
|
680-856, gnl|canFam2|chr20 (47039810-47039622) |
|
680-856, gnl|danRer3|chr22 (25208009-25207821) |
|
680-856, gnl|dasNov1|scaffold_54517 (4431-4582) |
|
680-856, gnl|fr1|chrUn (251220321-251220133) |
|
680-856, gnl|hg17|chr19 (19092800-19092988) |
|
680-856, gnl|Hg17|chr19 (19092799-19092975) |
|
680-856, gnl|loxAfr1|scaffold_66225 (209-397) |
|
680-856, gnl|mm7|chr8 (68636530-68636335) |
|
680-856, gnl|Mm7|chr8 (68636529-68636353) |
|
680-856, gnl|monDom2|scaffold_75 (1967673-1967851) |
|
680-856, gnl|panTro1|chr20 (20167073-20167261) |
|
680-856, gnl|rheMac2|chr19 (18760222-18760410) |
|
680-856, gnl|rn3|chr16 (19722983-19723178) |
|
680-856, gnl|tetNig1|chr1_random (3368188-3368373) |
|
cov (0.264306) |
|
cmu (0.186393) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
hyp (0.142837) |
|
nca (0.136874) |
|
med (0.116252) |
|
cov (0.264306) |
|
cmu (0.186393) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
hyp (0.142837) |
|
nca (0.136874) |
|
med (0.116252) |
