Ss1.1-Pig4-TMW8022M13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACTTTGAACGGTTGTTGGAGGAAGAAAGAGAAAAAATGTTATCCAATCACACAGAGGCT GGGCCCTCCACCCCAGGAGGCATCTATGAGAGGCCTGTGGATTACCTGCCTGAGCGGGAT GTCTACGAGAGCCTCTGTCGTGGGGAGGGTGTCAAACTGACACCCCGAAGGCAGAAGAGG CTTTTCTGTAGGTACCACCATGGCAACAGGACGCCACAGCTGCTTATTGCCCCCTTCAAA GAGGAGGATGAGTGGGACAGCCCGCACATCGTCAGGTACTATGATGTCATGTCCGACGAG GAAATCGAGAGGATCAAGGAGATCGCAAAACCCAAACTTGCACGAGCCACTGTTCGTGAT CCCAAGACTGGTGTCCTCACTGTTGCCAGCTACAGGGTCTCCAAAAGCTCCTGGCTAGAG GAGGACGACGACCCTGTGGTGGCTCGGGTGAATCGTAGGATGCAGCACATCACAGGGCTG ACAGTAAAGACTGCAGAATTGTTGCAGGTCGCTAATTATGGAATGGGAGGACAGTACGAG CCGCATTTTGACTTCTCCAGGCGACCTTTTGACAGCGGCCTCAAAACGGAGGGGAATAGG TTAGCGACGTTTCTTAACTATATGAGTGACGTGGAAGCTGGTGGTGCCACCGTCTTTCCT GATCTGGGGGCTGCAATTTGGCCTAAGAAGGGCACCGCCGTATTCTGGTACAACCTCTTG CGGAGCGGGGAAGGTGACTACCGAACGAGGCATGCAGCCTGCCCTGTGCTTGTGGGCTGC AAGTGGGTTTCCAATAAGTGGTTCCATGAACGAGGACAGGAGTTCTTGAGGCCATGTGGA TCAACAGAAGTTGACTGACATCCTTTTCTGCCCTTCCCCTTCCTGGCCCCATAGCCCGTA TTGTCTTCAAGTTCAACATGACAGACCTCCCTGTGTGCTCCAGCCCTTGTCACACGGGTC TTTGGAGGCATGAATGTGTTTCTGGAGCAGAGAGTGGACTGGGGAAGGTTCTGAGTGACA TGGGTCCAGTCTCTCCGGTCAGTCTGTGCTATCTCTGGTCCAAGGGTAGTGTTGGAGTGG CTGCAGCAGAGTCAGGCTGTCTAGCACCCAGTAAGGTGCTTTTGTACCTCAGATGCTTTA GGTGTGAGATATTTCAATGAACCAAAGTTCTGATACCTTGTTTACATGTTTGTTTTTATG GAATTTCTATTAATGTGGCTTTAACCAAAAAATAAATTGTCCCTGCCAGAAGCCCCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACTTTGAACGGTTGTTGGAGGAAGAAAGAGAAAAAATGTTATCCAATCACACAGAGGCT GGGCCCTCCACCCCAGGAGGCATCTATGAGAGGCCTGTGGATTACCTGCCTGAGCGGGAT GTCTACGAGAGCCTCTGTCGTGGGGAGGGTGTCAAACTGACACCCCGAAGGCAGAAGAGG CTTTTCTGTAGGTACCACCATGGCAACAGGACGCCACAGCTGCTTATTGCCCCCTTCAAA GAGGAGGATGAGTGGGACAGCCCGCACATCGTCAGGTACTATGATGTCATGTCCGACGAG GAAATCGAGAGGATCAAGGAGATCGCAAAACCCAAACTTGCACGAGCCACTGTTCGTGAT CCCAAGACTGGTGTCCTCACTGTTGCCAGCTACAGGGTCTCCAAAAGCTCCTGGCTAGAG GAGGACGACGACCCTGTGGTGGCTCGGGTGAATCGTAGGATGCAGCACATCACAGGGCTG ACAGTAAAGACTGCAGAATTGTTGCAGGTCGCTAATTATGGAATGGGAGGACAGTACGAG CCGCATTTTGACTTCTCCAGGCGACCTTTTGACAGCGGCCTCAAAACGGAGGGGAATAGG TTAGCGACGTTTCTTAACTATATGAGTGACGTGGAAGCTGGTGGTGCCACCGTCTTTCCT GATCTGGGGGCTGCAATTTGGCCTAAGAAGGGCACCGCCGTATTCTGGTACAACCTCTTG CGGAGCGGGGAAGGTGACTACCGAACGAGGCATGCAGCCTGCCCTGTGCTTGTGGGCTGC AAGTGGGTTTCCAATAAGTGGTTCCATGAACGAGGACAGGAGTTCTTGAGGCCATGTGGA TCAACAGAAGTTGACTGACATCCTTTTCTGCCCTTCCCCTTCCTGGCCCCATAGCCCGTA TTGTCTTCAAGTTCAACATGACAGACCTCCCTGTGTGCTCCAGCCCTTGTCACACGGGTC TTTGGAGGCATGAATGTGTTTCTGGAGCAGAGAGTGGACTGGGGAAGGTTCTGAGTGACA TGGGTCCAGTCTCTCCGGTCAGTCTGTGCTATCTCTGGTCCAAGGGTAGTGTTGGAGTGG CTGCAGCAGAGTCAGGCTGTCTAGCACCCAGTAAGGTGCTTTTGTACCTCAGATGCTTTA GGTGTGAGATATTTCAATGAACCAAAGTTCTGATACCTTGTTTACATGTTTGTTTTTATG GAATTTCTATTAATGTGGCTTTAACCAAAAAATAAATTGTCCCTGCCAGAAGCCCCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 159-336, gnl|bosTau2|chr7 (16047128-16046951) | |
| 159-336, gnl|canFam2|chr11 (23534387-23534557) | |
| 159-336, gnl|danRer3|chr21 (39774479-39774309) | |
| 159-336, gnl|dasNov1|scaffold_5935 (12070-11900) | |
| 159-336, gnl|echTel1|scaffold_170502 (14648-14478) | |
| 159-336, gnl|fr1|chrUn (144473661-144473831) | |
| 159-336, gnl|galGal2|chr13 (15763941-15764111) | |
| 159-336, gnl|hg17|chr5 (131571298-131571468) | |
| 159-336, gnl|Hg17|chr5 (131571477-131571300) | |
| 159-336, gnl|loxAfr1|scaffold_20954 (11543-11713) | |
| 159-336, gnl|mm7|chr11 (54077007-54076837) | |
| 159-336, gnl|Mm7|chr11 (54076826-54077003) | |
| 159-336, gnl|monDom2|scaffold_6 (93945823-93945653) | |
| 159-336, gnl|oryCun1|scaffold_181949 (18889-19059) | |
| 159-336, gnl|panTro1|chr4 (137904356-137904526) | |
| 159-336, gnl|rheMac2|chr6 (128621526-128621696) | |
| 159-336, gnl|rn3|chr10 (39554537-39554367) | |
| 159-336, gnl|tetNig1|chrUn_random (9712743-9712573) | |
| 159-336, gnl|xenTro1|scaffold_1111 (250711-250881) | |
| 406-509, gnl|bosTau2|chr7 (16043052-16042949) | |
| 406-509, gnl|Hg17|chr5 (131567441-131567338) | |
| 406-509, gnl|Mm7|chr11 (54081701-54081804) | |
| 787-1259, gnl|bosTau2|chr7 (16033563-16033101) | |
| 787-1259, gnl|Hg17|chr5 (131556673-131556202) | |
| 787-1259, gnl|Mm7|chr11 (54087946-54088417) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 159-336, gnl|bosTau2|chr7 (16047128-16046951) | |
| 159-336, gnl|canFam2|chr11 (23534387-23534557) | |
| 159-336, gnl|danRer3|chr21 (39774479-39774309) | |
| 159-336, gnl|dasNov1|scaffold_5935 (12070-11900) | |
| 159-336, gnl|echTel1|scaffold_170502 (14648-14478) | |
| 159-336, gnl|fr1|chrUn (144473661-144473831) | |
| 159-336, gnl|galGal2|chr13 (15763941-15764111) | |
| 159-336, gnl|hg17|chr5 (131571298-131571468) | |
| 159-336, gnl|Hg17|chr5 (131571477-131571300) | |
| 159-336, gnl|loxAfr1|scaffold_20954 (11543-11713) | |
| 159-336, gnl|mm7|chr11 (54077007-54076837) | |
| 159-336, gnl|Mm7|chr11 (54076826-54077003) | |
| 159-336, gnl|monDom2|scaffold_6 (93945823-93945653) | |
| 159-336, gnl|oryCun1|scaffold_181949 (18889-19059) | |
| 159-336, gnl|panTro1|chr4 (137904356-137904526) | |
| 159-336, gnl|rheMac2|chr6 (128621526-128621696) | |
| 159-336, gnl|rn3|chr10 (39554537-39554367) | |
| 159-336, gnl|tetNig1|chrUn_random (9712743-9712573) | |
| 159-336, gnl|xenTro1|scaffold_1111 (250711-250881) | |
| 406-509, gnl|bosTau2|chr7 (16043052-16042949) | |
| 406-509, gnl|Hg17|chr5 (131567441-131567338) | |
| 406-509, gnl|Mm7|chr11 (54081701-54081804) | |
| 787-1259, gnl|bosTau2|chr7 (16033563-16033101) | |
| 787-1259, gnl|Hg17|chr5 (131556673-131556202) | |
| 787-1259, gnl|Mm7|chr11 (54087946-54088417) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| amn (0.417711) | |
| sag (0.36543) | |
| jca (0.22792) | |
| col (0.195008) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| che (0.136314) | |
| pla (0.133672) | |
| cly (0.120642) | |
| nbm (0.0993246) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| sag (0.36543) | |
| jca (0.22792) | |
| col (0.195008) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| che (0.136314) | |
| pla (0.133672) | |
| cly (0.120642) | |
| nbm (0.0993246) |