Non-Coding RNA Search

Ss1.1-Pig4-TMW8022M15.3

Sequence:


               
               GCCACGGCCGCCCGTAAGTGCCGAGGCCGGGACCCCGGGGAGAGCAGAGCCAGGTGAAGA
GCAGGCTGTGGCTTGGGGTTAAAATGCAGTGATTAGAGGGATGATGGACTATGCCTCAGA
GGCAAACCAGGAAGAATGCAATGAAAAGTATCAAGGAAAGGGGAAGGAGAAGTGTTAAAA
AGGGAATTTTGGAGAAGATGGGGAATAAAAAGGAGAGAGGCTAGGGAAAAACAGATTTAA
GGGGTCGCTGTTTCCTTGAAAGCCAAGAAGCTTGTAGAGCAAAGAGGACAAGATCCCAGA
TCTTTGCAGCCACCTGGCTGAGAAGAAGAGAAGAGAGGGAGGGTGGCCAACTTGATCCAG
CTGAAGCATCTCCAGGAGGCCTCCTCTGGATGTCCCATCGAGGCTGCCCTTCTGCTACAA
CGCGGAATTGGTGATCCCCGAGCACGTGGACATGGCTTTGCTCAGCAATATCCTAGCAGC
CTATTCCTTTGTCTCAGAAAATCCCGAGCGAGCAGCTTTGTACTTTGTCTCTGGCGTGTG
CATCGGGCTGGTCCTCACCCTGGCTGCCTTGGTGATGAGGATCTCTTGCCACACAGACTG
CCGGCAGCCTCCCCAGAAGAAGTTCCTACAGGACCGAGAAAGCAGCAGCAACAGCAGCGA
CAGTGAGGATGGCAGCTCGGACGCCGCCTCCGACATCTCGATCCGGAGACATCGCCGCTT
CGAGAGGACTTTGAACAAGAACGTCTTCACCTCAGCGGAAGAGCTGGAGCGCGCCCAGAG
GCTGGAGGAGCGGGAACGCATCATCAGGGAAATTTGGATGAATGGCCAGCCGGAAGTTCC
CGGCACCAGAAGCCTGAACCGTTACTACTAGGGGCTGGGTCAGGACCCCCGCACCGCTGT
TAGCCTCCTGGGAGACAAAGGGTCCCCCCAGGGAGGGTGGCCACAAAAAGCCCAACGCGG
TTCTGCTATTGCTAAGGGCCGCAGAGAGGAGCGGGACACCCCCATTTTCTAGCCAGAAGG
ATTGATTTCACCCTTTTAGACTCAATTTATGGAGACGTAGAAAAACCAAGTTGTTTCATC
AACCTTTCCAGGTGCTGAAAACCCGCTCCGCTCCAACACTGTGGATGGAGATGCGAGAAA
TGGAATTGTGGTTTCTCTTGATTTCTGAGGCTCTCGGGCGTTTTTTCAGACTTCACTGCG
ATGTGTTATTTCTTTGCAAAAGGAAACATTATTATAGCCTGAGGGCTAGGAAGAGCAGGG
TTAACCTAACACAGTAAATGCAATGTTCTAGATGACTCCATGCTATGGAGGTGATTTTTG
ATCCAGATAGCATGATCCGTGCTTATTATTTAAGGCTGATTTTTAAAAATCTTGTGTTGC
AGTGGCAACCTCGTCCATTTTAACTGGCACCTCAGGGATTCAAATCCTATTTTTTATTAC
AGTTCCCACTTCACTCATGAAAATGAACATTGTATTATAGGAGATGTGTCAGTGAACTCG
GAAAATGGCAATAACCTCAAAGGATGAAGAGTTTTATTTTAAATATAAAGAACATATTAA
CATGCACATTCAAAAATGCTGCACAAGAATAAAAGCTGTGTTCCCCCCCCATTGTTATGA
CTAGATAATCATGATTTTAAACATTTTGTTAAAAAAAATGAATTTGGATTTCTAAGAAAA
AAATGGGAATGGGAGGTGAGCAATAAAGCCCAAATTTTAGATTGGGATAAAAAATAAATA
TTACCTAAGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACGGCCGCCCGTAAGTGCCGAGGCCGGGACCCCGGGGAGAGCAGAGCCAGGTGAAGA
GCAGGCTGTGGCTTGGGGTTAAAATGCAGTGATTAGAGGGATGATGGACTATGCCTCAGA
GGCAAACCAGGAAGAATGCAATGAAAAGTATCAAGGAAAGGGGAAGGAGAAGTGTTAAAA
AGGGAATTTTGGAGAAGATGGGGAATAAAAAGGAGAGAGGCTAGGGAAAAACAGATTTAA
GGGGTCGCTGTTTCCTTGAAAGCCAAGAAGCTTGTAGAGCAAAGAGGACAAGATCCCAGA
TCTTTGCAGCCACCTGGCTGAGAAGAAGAGAAGAGAGGGAGGGTGGCCAACTTGATCCAG
CTGAAGCATCTCCAGGAGGCCTCCTCTGGATGTCCCATCGAGGCTGCCCTTCTGCTACAA
CGCGGAATTGGTGATCCCCGAGCACGTGGACATGGCTTTGCTCAGCAATATCCTAGCAGC
CTATTCCTTTGTCTCAGAAAATCCCGAGCGAGCAGCTTTGTACTTTGTCTCTGGCGTGTG
CATCGGGCTGGTCCTCACCCTGGCTGCCTTGGTGATGAGGATCTCTTGCCACACAGACTG
CCGGCAGCCTCCCCAGAAGAAGTTCCTACAGGACCGAGAAAGCAGCAGCAACAGCAGCGA
CAGTGAGGATGGCAGCTCGGACGCCGCCTCCGACATCTCGATCCGGAGACATCGCCGCTT
CGAGAGGACTTTGAACAAGAACGTCTTCACCTCAGCGGAAGAGCTGGAGCGCGCCCAGAG
GCTGGAGGAGCGGGAACGCATCATCAGGGAAATTTGGATGAATGGCCAGCCGGAAGTTCC
CGGCACCAGAAGCCTGAACCGTTACTACTAGGGGCTGGGTCAGGACCCCCGCACCGCTGT
TAGCCTCCTGGGAGACAAAGGGTCCCCCCAGGGAGGGTGGCCACAAAAAGCCCAACGCGG
TTCTGCTATTGCTAAGGGCCGCAGAGAGGAGCGGGACACCCCCATTTTCTAGCCAGAAGG
ATTGATTTCACCCTTTTAGACTCAATTTATGGAGACGTAGAAAAACCAAGTTGTTTCATC
AACCTTTCCAGGTGCTGAAAACCCGCTCCGCTCCAACACTGTGGATGGAGATGCGAGAAA
TGGAATTGTGGTTTCTCTTGATTTCTGAGGCTCTCGGGCGTTTTTTCAGACTTCACTGCG
ATGTGTTATTTCTTTGCAAAAGGAAACATTATTATAGCCTGAGGGCTAGGAAGAGCAGGG
TTAACCTAACACAGTAAATGCAATGTTCTAGATGACTCCATGCTATGGAGGTGATTTTTG
ATCCAGATAGCATGATCCGTGCTTATTATTTAAGGCTGATTTTTAAAAATCTTGTGTTGC
AGTGGCAACCTCGTCCATTTTAACTGGCACCTCAGGGATTCAAATCCTATTTTTTATTAC
AGTTCCCACTTCACTCATGAAAATGAACATTGTATTATAGGAGATGTGTCAGTGAACTCG
GAAAATGGCAATAACCTCAAAGGATGAAGAGTTTTATTTTAAATATAAAGAACATATTAA
CATGCACATTCAAAAATGCTGCACAAGAATAAAAGCTGTGTTCCCCCCCCATTGTTATGA
CTAGATAATCATGATTTTAAACATTTTGTTAAAAAAAATGAATTTGGATTTCTAAGAAAA
AAATGGGAATGGGAGGTGAGCAATAAAGCCCAAATTTTAGATTGGGATAAAAAATAAATA
TTACCTAAGATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H8M9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H8M9_HUMAN

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               37-213, gnl|bosTau2|chr11 (31890709-31890533)
               

               
               37-213, gnl|Hg17|chr2 (75657563-75657371)
               


               
               495-1752, gnl|bosTau2|chr11 (31868881-31867600)
               

               
               495-1752, gnl|Hg17|chr2 (75632393-75631101)
               

               
               495-1752, gnl|Mm7|chr6 (82119195-82120500)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-213, gnl|bosTau2|chr11 (31890709-31890533)
               

               
               37-213, gnl|Hg17|chr2 (75657563-75657371)
               


               
               495-1752, gnl|bosTau2|chr11 (31868881-31867600)
               

               
               495-1752, gnl|Hg17|chr2 (75632393-75631101)
               

               
               495-1752, gnl|Mm7|chr6 (82119195-82120500)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               pro (1.02407)
               

               
               lun (0.601956)
               

               
               fli (0.202881)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nmm (0.132802)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               lun (0.601956)
               

               
               fli (0.202881)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nmm (0.132802)
               

               
               eje (0.0988338)

	37-213, gnl\|bosTau2\|chr11 (31890709-31890533)
	37-213, gnl\|Hg17\|chr2 (75657563-75657371)

	495-1752, gnl\|bosTau2\|chr11 (31868881-31867600)
	495-1752, gnl\|Hg17\|chr2 (75632393-75631101)
	495-1752, gnl\|Mm7\|chr6 (82119195-82120500)

	pro (1.02407)
	lun (0.601956)
	fli (0.202881)
	mcp (0.170648)
	cut (0.169924)
	nmm (0.132802)
	eje (0.0988338)