Non-Coding RNA Search

Ss1.1-Pig4-TMW8022M21.3

Sequence:


               
               AAGAAGCTGAGTGAAAGAAAAAAATACTGTAAGACATCCTTTTTAAGTTTTTATTTGCTT
GGATAACTGTAATGAGATCAGGAAAAGGAAAAATGTCCCACAGCCACATTGAAGATACAG
GTTCTTATCCCCAAATTAGGTTAGTTCCCAGATCTTAGATTAAAATGGTTAATTCGTTAA
AGCCTTTTTAAAAAGGATATATCTTAGTGTTGTAATTCTGACAGTCTTTTCCCCACAAAT
GTCGGGAATGTATTTATTTAATTCCGTCAGATGAGCTTTCTCCCAGTGCCCCCTCAAAGC
CATGCTGAAGTCATTCCCTTGTTATCATTGTTACTCTAGTTCCTGCCGTTAAAACTGCTG
CAGAGGAAAAAAGTGATGGAACACTATGAACAAAAAGGAGCACCTGAACTGGTCTGGTTG
TTTAGGATCCAATTTGTTTAATCCCCGTCATTCTCTTATCAAGCCAGATGCTACTCTGCC
TGAGTCATGGAAATTTTTGTTTGCACTCTGTAGTCTTTGGCTAATCGTATGGAAATGTTT
GCACCTATGTAAAATCTTAAGCAAATTATAAAGCGATAGAGAACTAGGAGTAAGCTGGAA
ACTGAATGACATGTTTTTTGTTTATACAGTGCGGTGGGGGGAGGGATGGGGAATATCAAG
TAACTCTGTTCCAAGTTTGACGTTTGGCATTAATGTGAAGCAGTGGGACCATGCTGCCTG
CTAAACTACTGTATGAATCCTAAGTGTTCTGGAGACCAGCAGCTGGAGGCTGGAGGCCGG
CATCTATACAACAGAGGGGAAGCACCACCGATTCACTGGGGAAAAGGAAGGACGTCGTGC
AAGGCCTGGAGTCATCACTTGCAAAGGGAAAGTCGGGGTGTATGTGATGCTGTGAGGAGG
TTCACCTTTGATTGCACTGCTCCACAGAGCCCTCAGATATGGCCAATCCTAATGGGCTAC
CTCGGCTTTAACAGTTAATTTCAGTAAGTCTTGTTTCAGAGGTTTGTCTTTTTTTTGCTT
ATACCTTCAGTGCCACTATTTTCCACTGCAGTGTTTTGACTTCACAAACCGCCTTCTGCA
CAGAGAACAATGTATTGCTGAAAATGGGCAGTAGAAGCAAATGCTGTTATTACATTTGAC
CTACAAAGTATTCAGAGTGACTGTTAGATGGGAATTAAAATTTAGCTTTCCCCACATAGG
ACCTTGTTTTGCACCTTATAAGGAGTGTACTAATTGTTAATTAGGTGTTGCTTTTATTTA
TATAAGCATTCCCAAAGAATTAGATTTGAATTTTGTTTTTATTTGAGTTTTAGGAATTTT
TTTAAAAGGCTCTTATTTAGATTGACTAACATCATACTTATAATAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAGCTGAGTGAAAGAAAAAAATACTGTAAGACATCCTTTTTAAGTTTTTATTTGCTT
GGATAACTGTAATGAGATCAGGAAAAGGAAAAATGTCCCACAGCCACATTGAAGATACAG
GTTCTTATCCCCAAATTAGGTTAGTTCCCAGATCTTAGATTAAAATGGTTAATTCGTTAA
AGCCTTTTTAAAAAGGATATATCTTAGTGTTGTAATTCTGACAGTCTTTTCCCCACAAAT
GTCGGGAATGTATTTATTTAATTCCGTCAGATGAGCTTTCTCCCAGTGCCCCCTCAAAGC
CATGCTGAAGTCATTCCCTTGTTATCATTGTTACTCTAGTTCCTGCCGTTAAAACTGCTG
CAGAGGAAAAAAGTGATGGAACACTATGAACAAAAAGGAGCACCTGAACTGGTCTGGTTG
TTTAGGATCCAATTTGTTTAATCCCCGTCATTCTCTTATCAAGCCAGATGCTACTCTGCC
TGAGTCATGGAAATTTTTGTTTGCACTCTGTAGTCTTTGGCTAATCGTATGGAAATGTTT
GCACCTATGTAAAATCTTAAGCAAATTATAAAGCGATAGAGAACTAGGAGTAAGCTGGAA
ACTGAATGACATGTTTTTTGTTTATACAGTGCGGTGGGGGGAGGGATGGGGAATATCAAG
TAACTCTGTTCCAAGTTTGACGTTTGGCATTAATGTGAAGCAGTGGGACCATGCTGCCTG
CTAAACTACTGTATGAATCCTAAGTGTTCTGGAGACCAGCAGCTGGAGGCTGGAGGCCGG
CATCTATACAACAGAGGGGAAGCACCACCGATTCACTGGGGAAAAGGAAGGACGTCGTGC
AAGGCCTGGAGTCATCACTTGCAAAGGGAAAGTCGGGGTGTATGTGATGCTGTGAGGAGG
TTCACCTTTGATTGCACTGCTCCACAGAGCCCTCAGATATGGCCAATCCTAATGGGCTAC
CTCGGCTTTAACAGTTAATTTCAGTAAGTCTTGTTTCAGAGGTTTGTCTTTTTTTTGCTT
ATACCTTCAGTGCCACTATTTTCCACTGCAGTGTTTTGACTTCACAAACCGCCTTCTGCA
CAGAGAACAATGTATTGCTGAAAATGGGCAGTAGAAGCAAATGCTGTTATTACATTTGAC
CTACAAAGTATTCAGAGTGACTGTTAGATGGGAATTAAAATTTAGCTTTCCCCACATAGG
ACCTTGTTTTGCACCTTATAAGGAGTGTACTAATTGTTAATTAGGTGTTGCTTTTATTTA
TATAAGCATTCCCAAAGAATTAGATTTGAATTTTGTTTTTATTTGAGTTTTAGGAATTTT
TTTAAAAGGCTCTTATTTAGATTGACTAACATCATACTTATAATAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1378, gnl|bosTau2|chr1 (29247892-29249259)
               

               
               1-1378, gnl|Hg17|chr3 (109010127-109011479)
               

               
               1-1378, gnl|Mm7|chr16 (49956342-49955082)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1378, gnl|bosTau2|chr1 (29247892-29249259)
               

               
               1-1378, gnl|Hg17|chr3 (109010127-109011479)
               

               
               1-1378, gnl|Mm7|chr16 (49956342-49955082)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               cki (0.330469)
               

               
               bla (0.248694)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               bla (0.248694)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

	1-1378, gnl\|bosTau2\|chr1 (29247892-29249259)
	1-1378, gnl\|Hg17\|chr3 (109010127-109011479)
	1-1378, gnl\|Mm7\|chr16 (49956342-49955082)

	cki (0.330469)
	bla (0.248694)
	cmu (0.186393)
	sin (0.174948)
	hlv (0.139256)
	pla (0.133672)
	ova (0.129132)
	thg (0.126791)
	eru (0.120048)
	pgl (0.118483)
	ldo (0.0970026)