Non-Coding RNA Search

Ss1.1-Pig4-TMW8022M24.5

Sequence:


               
               GCTGCGTCCCCCAGGCAACTCGGCAGCCGCGGCCTGAGCTTCTGCCTGCAGGTGTTGGCG
CTGAGGCTCCCGGGCACAGCCTGCTTCGGCTCCATGGTCGGTTTCGGGGCCAACCGGCGG
GCGGGCCGCCTGCCCTCCTTCGTGTTGGTGGTCCTGCTGGTCGTGATCGCTGTCCTCGCC
TTCAACTACTGGAGCATCTCCTCCCGCCACGTCCTGCTTCAGGAGGAAGTGGCCGAGCTG
CAGGGCCAGGTCCAGCGCACAGAGGTAGCCCGCGGGCGCCTGGAGAAGCGCAATTCGGAC
CTCCTGCTCTTGGTGGACTCGCACAAGAAACAGATTGACCAGAAAGAGGCCGACTACGGC
CGCCTCAGCAGCCGGCTGCAGGCCAGGGAGGGCCTCGGGAAAAGATGCGAGGATGACAAG
GTTAAACTACAGAACAACATATCATATCAGATGGCTGACATACGTCATTTAAAAGAGCAA
CTTGCTGAGCTTCGCCAGGAGTTTCTTCGACAGGAAGACCAGCTTCAGGACTATAGGAAA
AACAATACTTACCTTGTGAAGAGATTAGAATATGAGAGTTTTCAGTGTGGACAACAGATC
AAGGAATTAAGAGCTCAGCATGAAGAAAATATTAAAAAATTAGCAGACCAGTTTTTGCAG
GAACAAAAGCAAGAGACCCACAAGTTTGAATCAAAAAATAGAAATGAATTGGATATAAAC
AATCATGCAGTGCCTAGAAACATCCCAAAAGTAGAGGAGAATGCTGCAGACAAGAATAAA
GAACCCTCAAAAAATCACAATCCACATGGGAAAGAACAAATCAAAGGAGGTGGTGATGCA
GGAATGCCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCGTCCCCCAGGCAACTCGGCAGCCGCGGCCTGAGCTTCTGCCTGCAGGTGTTGGCG
CTGAGGCTCCCGGGCACAGCCTGCTTCGGCTCCATGGTCGGTTTCGGGGCCAACCGGCGG
GCGGGCCGCCTGCCCTCCTTCGTGTTGGTGGTCCTGCTGGTCGTGATCGCTGTCCTCGCC
TTCAACTACTGGAGCATCTCCTCCCGCCACGTCCTGCTTCAGGAGGAAGTGGCCGAGCTG
CAGGGCCAGGTCCAGCGCACAGAGGTAGCCCGCGGGCGCCTGGAGAAGCGCAATTCGGAC
CTCCTGCTCTTGGTGGACTCGCACAAGAAACAGATTGACCAGAAAGAGGCCGACTACGGC
CGCCTCAGCAGCCGGCTGCAGGCCAGGGAGGGCCTCGGGAAAAGATGCGAGGATGACAAG
GTTAAACTACAGAACAACATATCATATCAGATGGCTGACATACGTCATTTAAAAGAGCAA
CTTGCTGAGCTTCGCCAGGAGTTTCTTCGACAGGAAGACCAGCTTCAGGACTATAGGAAA
AACAATACTTACCTTGTGAAGAGATTAGAATATGAGAGTTTTCAGTGTGGACAACAGATC
AAGGAATTAAGAGCTCAGCATGAAGAAAATATTAAAAAATTAGCAGACCAGTTTTTGCAG
GAACAAAAGCAAGAGACCCACAAGTTTGAATCAAAAAATAGAAATGAATTGGATATAAAC
AATCATGCAGTGCCTAGAAACATCCCAAAAGTAGAGGAGAATGCTGCAGACAAGAATAAA
GAACCCTCAAAAAATCACAATCCACATGGGAAAGAACAAATCAAAGGAGGTGGTGATGCA
GGAATGCCTGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8C4Z2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8C4Z2_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               297-416, - strand, RNAz p=0.611409

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               297-416, - strand, RNAz p=0.611409

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-422, gnl|bosTau2|chr21 (35077807-35078249)
               

               
               4-422, gnl|Hg17|chr15 (42368431-42368848)
               

               
               4-422, gnl|Mm7|chr2 (121607983-121608386)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-422, gnl|bosTau2|chr21 (35077807-35078249)
               

               
               4-422, gnl|Hg17|chr15 (42368431-42368848)
               

               
               4-422, gnl|Mm7|chr2 (121607983-121608386)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	4-422, gnl\|bosTau2\|chr21 (35077807-35078249)
	4-422, gnl\|Hg17\|chr15 (42368431-42368848)
	4-422, gnl\|Mm7\|chr2 (121607983-121608386)