Non-Coding RNA Search

Ss1.1-Pig4-TMW8022N03.5

Sequence:


               
               TTTCCGTCGCATTTTGGAAAAGGAGAAAGTCCTGTCCCAGAGTGACAATGGCTACCTACA
GCCTGGCGAACGAGCGATTACGCGCCCTAGAAGACATCGAACGGGAAATTGGAGCCATTC
TTCAGAATGCAGGTACCGTGATCTTAGAACTGTCCAAGGAAAAAACCAATGAGCGGCTAC
TAGACCGACAGGCAGCGGCCTTTACGGCGTCGGTGCAGCACGTGGAGGCGGAGCTGTCGG
CTCAGATCCGCTATCTCACGCAGGTGGCCACAGGGCAGCCCCATGAGGGCTCCAGTTACT
CTTCAAGGAAGGACTGTCAGATGGCCCTGAAGCGAGTGGACTATGCTCGTCTCAAGCTCA
ATGAGGTGGCCCGAACCTGTGAGCAGATGCTGGAAAACTAGGCTGGGCAGGTGAAAAGCT
TGGAGGGAGAGCTCCACTTGCAACCCGACACAGAACCTGGAGGATGGAAGCAGGGCTGCC
CTGAATATGCCCAGCTGGTCAGAGGCTAGGAGGACAAGGGGAGCAAAAGGTGGGAATGGA
GAAACTTAAAGACCAAGCCCACCCACGGCTGTGCCTTCGCTGCTCCAGCAGGGTGCCCCT
GCCGGGCACTTCACCAGGCGCTGACAAGCTCAGACAGGAGATGGAGAATCAGACACTGAA
CCCACTTCCTCATGTCCCTGCCCCAGGCTCCCCACAGACTTGGGCCAATGAAGACACATT
CTTCTTCATTGGAAGAGACAAAAGGAGAACTAGGAGTTTTGATAATAAAAACAATAACAT
TAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCGTCGCATTTTGGAAAAGGAGAAAGTCCTGTCCCAGAGTGACAATGGCTACCTACA
GCCTGGCGAACGAGCGATTACGCGCCCTAGAAGACATCGAACGGGAAATTGGAGCCATTC
TTCAGAATGCAGGTACCGTGATCTTAGAACTGTCCAAGGAAAAAACCAATGAGCGGCTAC
TAGACCGACAGGCAGCGGCCTTTACGGCGTCGGTGCAGCACGTGGAGGCGGAGCTGTCGG
CTCAGATCCGCTATCTCACGCAGGTGGCCACAGGGCAGCCCCATGAGGGCTCCAGTTACT
CTTCAAGGAAGGACTGTCAGATGGCCCTGAAGCGAGTGGACTATGCTCGTCTCAAGCTCA
ATGAGGTGGCCCGAACCTGTGAGCAGATGCTGGAAAACTAGGCTGGGCAGGTGAAAAGCT
TGGAGGGAGAGCTCCACTTGCAACCCGACACAGAACCTGGAGGATGGAAGCAGGGCTGCC
CTGAATATGCCCAGCTGGTCAGAGGCTAGGAGGACAAGGGGAGCAAAAGGTGGGAATGGA
GAAACTTAAAGACCAAGCCCACCCACGGCTGTGCCTTCGCTGCTCCAGCAGGGTGCCCCT
GCCGGGCACTTCACCAGGCGCTGACAAGCTCAGACAGGAGATGGAGAATCAGACACTGAA
CCCACTTCCTCATGTCCCTGCCCCAGGCTCCCCACAGACTTGGGCCAATGAAGACACATT
CTTCTTCATTGGAAGAGACAAAAGGAGAACTAGGAGTTTTGATAATAAAAACAATAACAT
TAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61817204|ref|XP_589055.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61817204|ref|XP_589055.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               253-788, gnl|bosTau2|chr19 (14499359-14498828)
               

               
               253-788, gnl|Hg17|chr17 (4583086-4583653)
               

               
               253-788, gnl|Mm7|chr11 (70534669-70535305)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               253-788, gnl|bosTau2|chr19 (14499359-14498828)
               

               
               253-788, gnl|Hg17|chr17 (4583086-4583653)
               

               
               253-788, gnl|Mm7|chr11 (70534669-70535305)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               jej (0.197844)
               

               
               ill (0.175593)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ute (0.132784)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ute (0.132784)

	253-788, gnl\|bosTau2\|chr19 (14499359-14498828)
	253-788, gnl\|Hg17\|chr17 (4583086-4583653)
	253-788, gnl\|Mm7\|chr11 (70534669-70535305)

	jej (0.197844)
	ill (0.175593)
	nca (0.136874)
	che (0.136314)
	ute (0.132784)