Non-Coding RNA Search

Ss1.1-Pig4-TMW8022N10.3

Sequence:


               
               ACTGACTCTTGTTGACTATGACATGGTGCATTATCACCCTTCTAAGGTGGCAGCAGCTGC
TTCCTGCCTGTCTCAGAAGGTTCTAGGCCAAGGAAAATGGAACTTAAAGCAGCAGTATTA
CACTGGATACACCGAGAATGAAGTATTGGAGGTCATGCAGCACATGGCCAAAAATGTAAT
GAAAGTGAATGAAAACTTAACGAAATTCATTGCCATCAAGAATAAATACGCAAGCAGCAA
ACTCCTGAAGATCAGCACGATTCCTCAGCTGAACTCAAAAGCCATCCAAGAGCTTGCCTC
ACCTCTGATGGGACGGTCCTAGGCTGCTGGGAAGAGCGCTTCGTCTGTGCACTTTGTCTT
ACTAACTTTGTATATATAGTCCTTTTGTCTTATTTCATGAAACCTTTTCTCAGACCTGTT
TTCTAAATGTATATTGAGACTGGAGGTGAGAGATTAAAAACTTGTCTTCAAAATGTTAAG
TTTGAAGATGCCCAGTAGATATCCAAGTGCAAAAGACAGAAAGTACAAGACTTGAGTTCA
GTGGGAGAGGTGAGGACTGTAGATACGCAAGTAAGAATAAGTGGCATTCAGACAGCATTG
AAAGCTTTGGGGGCAGGTGCCATCACCCAAGGAAAGCATGGAGTTGTAGAAGAGATCAAG
TCCCAGAGCAGAGCCCTGGAAGGAACAGCATTTGGAAGTGGAGTACTGGGGACCCACAAA
AGAGACCAAGAGGAAGCAGCCAGTATCCAAGGACAAAGTCTAGAAGAAGAATATGCTGTC
ACAGGACCCAAGAGAAGAAGTATTTCAGAATGGAGGGAGTGGGAAGCTGGGTCAAAGGCT
GCCAAGAGGTCAACTAGGAAAAGGATTGTATTTGGTCACATGGAAATCTTTGGTGACCTT
AACGGGATCAGTTTCACTTTTCATCTCTTGGATGCAGTTTGTCTATGTTTAAAAAAAAAA
AAATTGTTTTTAAGCATTTAAAACAAAGTATATTGAGGAAAATTAAAGCTATTGATCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGACTCTTGTTGACTATGACATGGTGCATTATCACCCTTCTAAGGTGGCAGCAGCTGC
TTCCTGCCTGTCTCAGAAGGTTCTAGGCCAAGGAAAATGGAACTTAAAGCAGCAGTATTA
CACTGGATACACCGAGAATGAAGTATTGGAGGTCATGCAGCACATGGCCAAAAATGTAAT
GAAAGTGAATGAAAACTTAACGAAATTCATTGCCATCAAGAATAAATACGCAAGCAGCAA
ACTCCTGAAGATCAGCACGATTCCTCAGCTGAACTCAAAAGCCATCCAAGAGCTTGCCTC
ACCTCTGATGGGACGGTCCTAGGCTGCTGGGAAGAGCGCTTCGTCTGTGCACTTTGTCTT
ACTAACTTTGTATATATAGTCCTTTTGTCTTATTTCATGAAACCTTTTCTCAGACCTGTT
TTCTAAATGTATATTGAGACTGGAGGTGAGAGATTAAAAACTTGTCTTCAAAATGTTAAG
TTTGAAGATGCCCAGTAGATATCCAAGTGCAAAAGACAGAAAGTACAAGACTTGAGTTCA
GTGGGAGAGGTGAGGACTGTAGATACGCAAGTAAGAATAAGTGGCATTCAGACAGCATTG
AAAGCTTTGGGGGCAGGTGCCATCACCCAAGGAAAGCATGGAGTTGTAGAAGAGATCAAG
TCCCAGAGCAGAGCCCTGGAAGGAACAGCATTTGGAAGTGGAGTACTGGGGACCCACAAA
AGAGACCAAGAGGAAGCAGCCAGTATCCAAGGACAAAGTCTAGAAGAAGAATATGCTGTC
ACAGGACCCAAGAGAAGAAGTATTTCAGAATGGAGGGAGTGGGAAGCTGGGTCAAAGGCT
GCCAAGAGGTCAACTAGGAAAAGGATTGTATTTGGTCACATGGAAATCTTTGGTGACCTT
AACGGGATCAGTTTCACTTTTCATCTCTTGGATGCAGTTTGTCTATGTTTAAAAAAAAAA
AAATTGTTTTTAAGCATTTAAAACAAAGTATATTGAGGAAAATTAAAGCTATTGATCCTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               212-438, gnl|bosTau2|chr10 (37911145-37911387)
               

               
               212-438, gnl|Hg17|chr15 (57204258-57204504)
               

               
               212-438, gnl|Mm7|chr9 (70439979-70439768)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               212-438, gnl|bosTau2|chr10 (37911145-37911387)
               

               
               212-438, gnl|Hg17|chr15 (57204258-57204504)
               

               
               212-438, gnl|Mm7|chr9 (70439979-70439768)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               fty (0.351679)
               

               
               thg (0.253582)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               nca (0.136874)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               thg (0.253582)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               nca (0.136874)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	212-438, gnl\|bosTau2\|chr10 (37911145-37911387)
	212-438, gnl\|Hg17\|chr15 (57204258-57204504)
	212-438, gnl\|Mm7\|chr9 (70439979-70439768)

	fty (0.351679)
	thg (0.253582)
	tes (0.207814)
	ill (0.175593)
	fbs (0.175346)
	rec (0.17307)
	nca (0.136874)
	jej (0.0989218)
	ldo (0.0970026)