Non-Coding RNA Search

Ss1.1-Pig4-TMW8022N21.3

Sequence:


               
               TGTTGACTGGAGTAAGGTTAATAAACCTCCATACCCAAAACTTGGAGCCAACATGAAAAA
GCTAGAAAACTGCAACTATGCTGTTGAATTAGGGAAGCATCCTGCCAAATTCTCCCTGGT
TGGCATTGGAGGGCAAGACCTGAATGATGGGAACCAAACCCTGACTTTAGCTTTAGTCTG
GCAGCTGATGAGAAGATACACCCTCAATGTCCTAGAAGATCTTGGAGATGGTCAGAAAGC
TAATGACGACATCATTGTAAACTGGGTGAACAGAACATTGAGTGAAGCTGGAAAATCAAC
TTCCATTCAGAGTTTTAAGGACAAGACAATCAGCTCCAGTTTGGCAGTTGTGGATTTAAT
TGACGCCATCCAGCCAGGCTGCATAAACTACGACCTTGTTAAGAGCGGCAATCTATCAGA
AGATGACAAGCATAATAATGCCAAGTACGCAGTGTCAATGGCAAGAAGAATTGGAGCCAG
GGTGTATGCGCTCCCCGAAGACCTTGTGGAAGTAAAGCCCAAGATGGTCATGACGGTGTT
TGCTTGTTTGATGGGCAGGGGAATGAAGAGAGTGTAAAATAACCAATTCGAATAGCAACA
GCCTTGCTCCCAAGGTGCATGATTAGCAGGTCAGGCAGTTTCTAGGTGAAGTGCTCATGG
CTTAAGGAACTGTTGGTTATTTAAAGGACTTTTAGTTTTAACAAGACTAAGCTCATCATG
AGAGAGCCATCAGGGGAAAGAGTTTTAATAAAAACAACCCCTCTTTCCCATAGTCAAGGT
GGATTTGTCAGGCTCACCTGAAATGTGCTCATAGCCAAATCATTTACTTGCTTCTCCTAG
ATTGCTGCCCTTGATGTTTCCATTGCTGTGTGTATTTCTCTCTATGTTCCCTCTTAGAAT
TTCCACCTCCTGGGACTTGCTTAGATGATTGGATATGAATATTATTAGACAATAATTTTG
CTTTCCATCCAGTATGCTAGTTCTTATTTGAGAACTGGGGTCAGAGGGTATTTGGATATG
AGTATCCTTTGCTTATCTTTCTAGTACTGAAAAATCTACAGAAGTAACTGGCTGTGCAGA
ATGTAATAGAAGCTTTTCGTATTCTTTTATTCTTAAAATTAGTATCTTTTTACAGTATTC
TTTCTACATGATCCTTTTTTGTACATTTAAGAATATTTTGATTACATTAAATAAGACTGC
TGATTTTGCTACTTTTTTTAAGGGGTCTTCAAGTAAGTAAAAAAACATACATTGTAGGTA
GAGGAAAAATGTACCTAGAATTTCCATCTTCCCTCTCACACCCAACCTGTAAACAATTGA
CATATTGGATCCTAAAACACTTGGTTCAAATATGCTTATTTGTTTTAAAACCCGTATTAT
CAAATTCTCTCTTTAGATTTAAAATGGTGTTGAATATGACACTTTTGAGGAGAGGGTATG
CTCAGAACTTAGGCAGGATACAGTAGGCCAGGTATGCTAAGTGTATAATAAATTTTCTAA
TTTTACACCTAAAATAAGGAAATGTGGTCACTAAAAATAAACATATATGTAGGACTTAAT
GTATGTACTCTTGCTTTGTCAAGCTGTTTGCTCTAGTTTTCAAGATCATAATGTTACTCT
AACTCTGAAATGTGATGTAATCTGGTAGCAGTGTATTAGTTCAAATAAAGGCATTTACGT
AATAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGACTGGAGTAAGGTTAATAAACCTCCATACCCAAAACTTGGAGCCAACATGAAAAA
GCTAGAAAACTGCAACTATGCTGTTGAATTAGGGAAGCATCCTGCCAAATTCTCCCTGGT
TGGCATTGGAGGGCAAGACCTGAATGATGGGAACCAAACCCTGACTTTAGCTTTAGTCTG
GCAGCTGATGAGAAGATACACCCTCAATGTCCTAGAAGATCTTGGAGATGGTCAGAAAGC
TAATGACGACATCATTGTAAACTGGGTGAACAGAACATTGAGTGAAGCTGGAAAATCAAC
TTCCATTCAGAGTTTTAAGGACAAGACAATCAGCTCCAGTTTGGCAGTTGTGGATTTAAT
TGACGCCATCCAGCCAGGCTGCATAAACTACGACCTTGTTAAGAGCGGCAATCTATCAGA
AGATGACAAGCATAATAATGCCAAGTACGCAGTGTCAATGGCAAGAAGAATTGGAGCCAG
GGTGTATGCGCTCCCCGAAGACCTTGTGGAAGTAAAGCCCAAGATGGTCATGACGGTGTT
TGCTTGTTTGATGGGCAGGGGAATGAAGAGAGTGTAAAATAACCAATTCGAATAGCAACA
GCCTTGCTCCCAAGGTGCATGATTAGCAGGTCAGGCAGTTTCTAGGTGAAGTGCTCATGG
CTTAAGGAACTGTTGGTTATTTAAAGGACTTTTAGTTTTAACAAGACTAAGCTCATCATG
AGAGAGCCATCAGGGGAAAGAGTTTTAATAAAAACAACCCCTCTTTCCCATAGTCAAGGT
GGATTTGTCAGGCTCACCTGAAATGTGCTCATAGCCAAATCATTTACTTGCTTCTCCTAG
ATTGCTGCCCTTGATGTTTCCATTGCTGTGTGTATTTCTCTCTATGTTCCCTCTTAGAAT
TTCCACCTCCTGGGACTTGCTTAGATGATTGGATATGAATATTATTAGACAATAATTTTG
CTTTCCATCCAGTATGCTAGTTCTTATTTGAGAACTGGGGTCAGAGGGTATTTGGATATG
AGTATCCTTTGCTTATCTTTCTAGTACTGAAAAATCTACAGAAGTAACTGGCTGTGCAGA
ATGTAATAGAAGCTTTTCGTATTCTTTTATTCTTAAAATTAGTATCTTTTTACAGTATTC
TTTCTACATGATCCTTTTTTGTACATTTAAGAATATTTTGATTACATTAAATAAGACTGC
TGATTTTGCTACTTTTTTTAAGGGGTCTTCAAGTAAGTAAAAAAACATACATTGTAGGTA
GAGGAAAAATGTACCTAGAATTTCCATCTTCCCTCTCACACCCAACCTGTAAACAATTGA
CATATTGGATCCTAAAACACTTGGTTCAAATATGCTTATTTGTTTTAAAACCCGTATTAT
CAAATTCTCTCTTTAGATTTAAAATGGTGTTGAATATGACACTTTTGAGGAGAGGGTATG
CTCAGAACTTAGGCAGGATACAGTAGGCCAGGTATGCTAAGTGTATAATAAATTTTCTAA
TTTTACACCTAAAATAAGGAAATGTGGTCACTAAAAATAAACATATATGTAGGACTTAAT
GTATGTACTCTTGCTTTGTCAAGCTGTTTGCTCTAGTTTTCAAGATCATAATGTTACTCT
AACTCTGAAATGTGATGTAATCTGGTAGCAGTGTATTAGTTCAAATAAAGGCATTTACGT
AATAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               945-1058, + strand, RNAz p=0.967908

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               945-1058, + strand, RNAz p=0.967908

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005032, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005032, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               445-1683, gnl|bosTau2|chrX (16768103-16766854)
               

               
               445-1683, gnl|Hg17|chrX (114706729-114707973)
               

               
               445-1683, gnl|Mm7|chrX (71173548-71172311)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               445-1683, gnl|bosTau2|chrX (16768103-16766854)
               

               
               445-1683, gnl|Hg17|chrX (114706729-114707973)
               

               
               445-1683, gnl|Mm7|chrX (71173548-71172311)

Expressed library(ies): 36 entry(ies)

More info

Expressed library(ies): 36 entry(ies)

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               aor (1.95274)
               

               
               gul (1.77588)
               

               
               liv (1.31656)
               

               
               ret (1.1586)
               

               
               fat (0.884564)
               

               
               ova (0.645661)
               

               
               kid (0.518941)
               

               
               tbr (0.462535)
               

               
               vin (0.332557)
               

               
               ssp (0.271039)
               

               
               nmm (0.265604)
               

               
               tra (0.246184)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               fli (0.202881)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               jca (0.11396)

Expressed library(ies): 36 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (1.95274)
               

               
               gul (1.77588)
               

               
               liv (1.31656)
               

               
               ret (1.1586)
               

               
               fat (0.884564)
               

               
               ova (0.645661)
               

               
               kid (0.518941)
               

               
               tbr (0.462535)
               

               
               vin (0.332557)
               

               
               ssp (0.271039)
               

               
               nmm (0.265604)
               

               
               tra (0.246184)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               fli (0.202881)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               jca (0.11396)

	445-1683, gnl\|bosTau2\|chrX (16768103-16766854)
	445-1683, gnl\|Hg17\|chrX (114706729-114707973)
	445-1683, gnl\|Mm7\|chrX (71173548-71172311)

	aor (1.95274)
	gul (1.77588)
	liv (1.31656)
	ret (1.1586)
	fat (0.884564)
	ova (0.645661)
	kid (0.518941)
	tbr (0.462535)
	vin (0.332557)
	ssp (0.271039)
	nmm (0.265604)
	tra (0.246184)
	ebs (0.236602)
	mgp (0.230681)
	spc (0.226732)
	fli (0.202881)
	ldo (0.194005)
	sag (0.182715)
	mgm (0.180343)
	ton (0.1755)
	rec (0.17307)
	fhi (0.169578)
	cki (0.165235)
	mga (0.160205)
	fco (0.157208)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	spl (0.143184)
	hyp (0.142837)
	csk (0.140746)
	hlv (0.139256)
	pla (0.133672)
	ute (0.132784)
	sug (0.127291)
	jca (0.11396)