Non-Coding RNA Search

Ss1.1-Pig4-TMW8022O15.5

Sequence:


               
               GGGAGTGCTCACACAGGCCCACACAGATACACACACAGAGGGAAGGGGGGGGCGGGGTGC
GCAACAGGGCTGGGTCGGATCCCCACGGCCCCTCTCCGAAACAGTCTTTCCTCCCTTACA
CTCCCTTTCTCTTCCTCCTCCCACCGTAGAAACGTAGCGTGTTTATATTTTATGGCCAAA
CTATTTTGAATTTTGTTGTCCGGCCCCAGTTACGCTGCCCTCTCCCCTTTCAGGACCACA
GCTCCCGTCCTCTTGGCCTCTGGTCCTCTCCGCGGTGTTGTCCTTGGTTTCTTATGTAGC
TGATTCTTTCCACTTTAGTTTCTCCAGACCTGCCCCCCAGCCCCGTCACCCCGTCCCTCT
CCTACTCTCTGTGGCAGTTTCATATTTGCTAAGACGAATTTGCTCATTAAACATTTTGTT
GTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGTGCTCACACAGGCCCACACAGATACACACACAGAGGGAAGGGGGGGGCGGGGTGC
GCAACAGGGCTGGGTCGGATCCCCACGGCCCCTCTCCGAAACAGTCTTTCCTCCCTTACA
CTCCCTTTCTCTTCCTCCTCCCACCGTAGAAACGTAGCGTGTTTATATTTTATGGCCAAA
CTATTTTGAATTTTGTTGTCCGGCCCCAGTTACGCTGCCCTCTCCCCTTTCAGGACCACA
GCTCCCGTCCTCTTGGCCTCTGGTCCTCTCCGCGGTGTTGTCCTTGGTTTCTTATGTAGC
TGATTCTTTCCACTTTAGTTTCTCCAGACCTGCCCCCCAGCCCCGTCACCCCGTCCCTCT
CCTACTCTCTGTGGCAGTTTCATATTTGCTAAGACGAATTTGCTCATTAAACATTTTGTT
GTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               154-273, - strand, RNAz p=0.617745

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-273, - strand, RNAz p=0.617745

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-428, gnl|bosTau2|chr18 (52541101-52541502)
               

               
               10-428, gnl|Hg17|chr19 (60877465-60877889)
               

               
               10-428, gnl|Mm7|chr7 (4657501-4657915)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-428, gnl|bosTau2|chr18 (52541101-52541502)
               

               
               10-428, gnl|Hg17|chr19 (60877465-60877889)
               

               
               10-428, gnl|Mm7|chr7 (4657501-4657915)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               pty (0.428143)
               

               
               cov (0.396458)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.428143)
               

               
               cov (0.396458)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	10-428, gnl\|bosTau2\|chr18 (52541101-52541502)
	10-428, gnl\|Hg17\|chr19 (60877465-60877889)
	10-428, gnl\|Mm7\|chr7 (4657501-4657915)

	pty (0.428143)
	cov (0.396458)
	lnt (0.284616)
	fce (0.271592)
	med (0.232504)
	ece (0.229305)
	nms (0.213858)
	jej (0.197844)
	fcc (0.197785)
	fty (0.17584)
	fhi (0.169578)
	csp (0.161186)
	cag (0.151194)
	nmm (0.132802)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)
	ebs (0.118301)
	eje (0.0988338)