Non-Coding RNA Search

Ss1.1-Pig4-TMW8022P05.3

Sequence:


               
               GAAAATAAAGGGAAAGCATCTCTAATAATCCTGCCTGCTTTGAATTCTTCACCACAACCT
GAATCCCTAGAAGACACAGATAGTTTAAATTCAGAAAATTTGGATGACTGGTCTGATGAT
ATTTTTGGTGAGGAGCCAACTATCAAAAAAGGAAAAGAAGAAAAAGATCAGGTGAAAGTT
TTGCCAGTTATAAATTTGCCTATACCAGGATCAGTAGAATCACAGAGGGTAGGTAATCAT
TCTACAAGCACAGTCACTGAAAGTAGTCTTTACCAAGCAGTTGTGTTGGGATACCCTGCT
GTTGACAAAGGAGAGCAAGAAGACCGGACATATATCCCTCTCATGGAGTTCAGTTGTTCT
CATTCTCACTTGTTAAGCTTACCTGAAGAATGGATGTCTAACTGTTTGCCTAATTCCAAA
GTGAAGGAGATGAGATCGTTATTTCCAGAAGACTGGTATCAGTTTGTTTTAAAGCACTTG
GAGTGTTTTCATTCAAAAGAAAATGCTTCAAGTATAGTGGAAGAAATTGCAAAGGACAGA
GTATTGAAAGAATTTTATGTTCATGCAGTAGTGACTTGTTATTTTAGTTTATTTGGAGTG
GACAATATGACTCCTAGTCCTGGTCATATATTGAGAGTTTACAGTGGCGTTTTGCCTTGG
TCTGTTGCCTTGGATTGGCTTACAGAAAAGCCTGAACTGTTCCAACTAGTCCTGAAAGCT
TTCAGGTATACTCTGAAACTAATGATTGATAAAGCATACATTTGTTTTAGAGCCCACTTT
GCCCTGCAAATGTACTGTCATCAAGTGAGATGTTTTTATTTTTTCATTTTAGAAATGTAA
CAGTGTGATTCCTCATAACTTCACTGAACTTCCTTCTCCTCCCAAGTCAGATGCCTGAAA
AAAGCTAAGCTCTATAAAGCTCATTTTTTAAGATATGCTAATGGTTTTAAACAACATCAA
CTCTATGCCTAACATAAAAGTTAGAAGTAGTTGGCCAATATTTGTGCCATATGGATTGTG
GTGGGCTTTGGTAAATATGAAACATTTGTATAAGATTATATAATGAATTTTTTTAATGCT
TTTAAGTGTGTGATAAGTGACTTGACTTGGAGAAGTCAACAGCTGTGTAATTTTTACATA
CTTAAAAGATATACATATCAGTGTTTTTAAGTAATGATAATGGATCATACTGAAGGTTGC
ATTATGTATCTATATTTATTTAAAATATAATTTATAGTATTTTCAAACTTTGTGCTGTTT
TAACATTTAATACGTTTTCATTTTCTTTACATATACTGCAATTTAGAAACCTTAAAAATT
TTTAATAAAAGCTTCCCCTTTTTTTTCCTTTTCTTTTTTTTCTAAGTATCCTTTTTATAT
ATCCAAAAGGAAAAGGGATCTTCCCATTCATCCTGTGAATACTCACAGGATTAGCAATGT
TAGAGTAATCTGATTATAACTGTTAGAGGCCATTCTGTCGATCTGCCTCCTTTATTCCTT
TCTTTTCAACTGAATATACTGCTTCTGAAGAACTACCAGTTACTTGTGTCCTGAGGTGAA
CTAAAGGCAGGAAGAGATGGAGAAAAGTTTTCAGAATGTGATTAGGATTTTCATTCTCTT
ACTGCTTAGGAACTATTTACAGGTACTTGTAAGGAGAATGAACAATGAATCTACATCATT
TGAGACATGAATTTCCTCTACCCCTTACTTTACTGCCATCTGTAGCACCCTTTATTTGAT
CTATAGTGGCATCCTAGGTTAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAATAAAGGGAAAGCATCTCTAATAATCCTGCCTGCTTTGAATTCTTCACCACAACCT
GAATCCCTAGAAGACACAGATAGTTTAAATTCAGAAAATTTGGATGACTGGTCTGATGAT
ATTTTTGGTGAGGAGCCAACTATCAAAAAAGGAAAAGAAGAAAAAGATCAGGTGAAAGTT
TTGCCAGTTATAAATTTGCCTATACCAGGATCAGTAGAATCACAGAGGGTAGGTAATCAT
TCTACAAGCACAGTCACTGAAAGTAGTCTTTACCAAGCAGTTGTGTTGGGATACCCTGCT
GTTGACAAAGGAGAGCAAGAAGACCGGACATATATCCCTCTCATGGAGTTCAGTTGTTCT
CATTCTCACTTGTTAAGCTTACCTGAAGAATGGATGTCTAACTGTTTGCCTAATTCCAAA
GTGAAGGAGATGAGATCGTTATTTCCAGAAGACTGGTATCAGTTTGTTTTAAAGCACTTG
GAGTGTTTTCATTCAAAAGAAAATGCTTCAAGTATAGTGGAAGAAATTGCAAAGGACAGA
GTATTGAAAGAATTTTATGTTCATGCAGTAGTGACTTGTTATTTTAGTTTATTTGGAGTG
GACAATATGACTCCTAGTCCTGGTCATATATTGAGAGTTTACAGTGGCGTTTTGCCTTGG
TCTGTTGCCTTGGATTGGCTTACAGAAAAGCCTGAACTGTTCCAACTAGTCCTGAAAGCT
TTCAGGTATACTCTGAAACTAATGATTGATAAAGCATACATTTGTTTTAGAGCCCACTTT
GCCCTGCAAATGTACTGTCATCAAGTGAGATGTTTTTATTTTTTCATTTTAGAAATGTAA
CAGTGTGATTCCTCATAACTTCACTGAACTTCCTTCTCCTCCCAAGTCAGATGCCTGAAA
AAAGCTAAGCTCTATAAAGCTCATTTTTTAAGATATGCTAATGGTTTTAAACAACATCAA
CTCTATGCCTAACATAAAAGTTAGAAGTAGTTGGCCAATATTTGTGCCATATGGATTGTG
GTGGGCTTTGGTAAATATGAAACATTTGTATAAGATTATATAATGAATTTTTTTAATGCT
TTTAAGTGTGTGATAAGTGACTTGACTTGGAGAAGTCAACAGCTGTGTAATTTTTACATA
CTTAAAAGATATACATATCAGTGTTTTTAAGTAATGATAATGGATCATACTGAAGGTTGC
ATTATGTATCTATATTTATTTAAAATATAATTTATAGTATTTTCAAACTTTGTGCTGTTT
TAACATTTAATACGTTTTCATTTTCTTTACATATACTGCAATTTAGAAACCTTAAAAATT
TTTAATAAAAGCTTCCCCTTTTTTTTCCTTTTCTTTTTTTTCTAAGTATCCTTTTTATAT
ATCCAAAAGGAAAAGGGATCTTCCCATTCATCCTGTGAATACTCACAGGATTAGCAATGT
TAGAGTAATCTGATTATAACTGTTAGAGGCCATTCTGTCGATCTGCCTCCTTTATTCCTT
TCTTTTCAACTGAATATACTGCTTCTGAAGAACTACCAGTTACTTGTGTCCTGAGGTGAA
CTAAAGGCAGGAAGAGATGGAGAAAAGTTTTCAGAATGTGATTAGGATTTTCATTCTCTT
ACTGCTTAGGAACTATTTACAGGTACTTGTAAGGAGAATGAACAATGAATCTACATCATT
TGAGACATGAATTTCCTCTACCCCTTACTTTACTGCCATCTGTAGCACCCTTTATTTGAT
CTATAGTGGCATCCTAGGTTAGTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|18044328|gb|AAH19573.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18044328|gb|AAH19573.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               756-1240, gnl|bosTau2|chr7 (3275371-3274885)
               

               
               756-1240, gnl|Hg17|chr14 (59670678-59671144)
               

               
               756-1240, gnl|Mm7|chr12 (70530085-70530539)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               756-1240, gnl|bosTau2|chr7 (3275371-3274885)
               

               
               756-1240, gnl|Hg17|chr14 (59670678-59671144)
               

               
               756-1240, gnl|Mm7|chr12 (70530085-70530539)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ese (0.506009)
               

               
               liv (0.292569)
               

               
               mgm (0.180343)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.506009)
               

               
               liv (0.292569)
               

               
               mgm (0.180343)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	756-1240, gnl\|bosTau2\|chr7 (3275371-3274885)
	756-1240, gnl\|Hg17\|chr14 (59670678-59671144)
	756-1240, gnl\|Mm7\|chr12 (70530085-70530539)

	ese (0.506009)
	liv (0.292569)
	mgm (0.180343)
	lin (0.145603)
	nmm (0.132802)
	kid (0.129735)
	ret (0.128733)
	tra (0.123092)
	clu (0.119646)
	jca (0.11396)
	jej (0.0989218)