Ss1.1-Pig4-TMW8022P09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGGGGAAGACAAGAAGAAGTTTAAAACACGATCAGGTGAAACAGTACGCCTCATAGAC CTTCTGGAAGAAGGACTAAAACGCTCCATGGACAAATTGAAGGAAAAGGAAAGAGACAAG GTCTTAACCGCAGAGGAATTGAAGGCTGCTCAGACGTCTGTTGCTTACGGCTGTATCAAA TATGCTGATCTTTCCCATAACCGCCTGAATGACTATATCTTCTCCTTTGACAAAATGCTG GATGATAGAGGAAATACAGCTGCTTACTTGTTGTATGCCTTCACTAGAATCAGATCTATT GCCCGTCTCGCCAATATTGATGAAGAGATGCTCCAGAAAGCTGCTCGAGAGACCAAGATC ATTTTGGACCATGAGAAGGAATGGAAACTAGGCCGGTGCATCTTACGGTTCCCTGAGGTT CTGCAGAAGATTTTAGATGACTTATTTCTGCACACTCTCTGTGATTATATCTATGAGCTG GCAACTACTTTCACAGAATTCTACGATAGCTGCTATTGTGTGGAAAAAGATCGACAGACT GGAGAAGTACTGAAGGTGAACATGTGGCGTTTGCTGCTGTGCAAAGCAGTAGCTGCTGTC ATGGCCAAGGGGTTTGATATCCTGGGAATAAAGCCTGTCCAAAGAATGTAATCCTCCTTA GGTTCAAACACTGTGTGTTTTTACCAAAGTGGCCATTGGCATTGTTTGCTTTTTTACAAT CATGTGGATATAAAAACAAGTAAAAGAAATTTGTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGGGGAAGACAAGAAGAAGTTTAAAACACGATCAGGTGAAACAGTACGCCTCATAGAC CTTCTGGAAGAAGGACTAAAACGCTCCATGGACAAATTGAAGGAAAAGGAAAGAGACAAG GTCTTAACCGCAGAGGAATTGAAGGCTGCTCAGACGTCTGTTGCTTACGGCTGTATCAAA TATGCTGATCTTTCCCATAACCGCCTGAATGACTATATCTTCTCCTTTGACAAAATGCTG GATGATAGAGGAAATACAGCTGCTTACTTGTTGTATGCCTTCACTAGAATCAGATCTATT GCCCGTCTCGCCAATATTGATGAAGAGATGCTCCAGAAAGCTGCTCGAGAGACCAAGATC ATTTTGGACCATGAGAAGGAATGGAAACTAGGCCGGTGCATCTTACGGTTCCCTGAGGTT CTGCAGAAGATTTTAGATGACTTATTTCTGCACACTCTCTGTGATTATATCTATGAGCTG GCAACTACTTTCACAGAATTCTACGATAGCTGCTATTGTGTGGAAAAAGATCGACAGACT GGAGAAGTACTGAAGGTGAACATGTGGCGTTTGCTGCTGTGCAAAGCAGTAGCTGCTGTC ATGGCCAAGGGGTTTGATATCCTGGGAATAAAGCCTGTCCAAAGAATGTAATCCTCCTTA GGTTCAAACACTGTGTGTTTTTACCAAAGTGGCCATTGGCATTGTTTGCTTTTTTACAAT CATGTGGATATAAAAACAAGTAAAAGAAATTTGTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 407-542, - strand, RNAz p=0.9393 | |
| 409-542, - strand, RNAz p=0.983638 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 407-542, - strand, RNAz p=0.9393 | |
| 409-542, - strand, RNAz p=0.983638 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 15-122, gnl|bosTau2|chr7 (53067970-53067863) | |
| 15-122, gnl|canFam2|chr4 (46440427-46440329) | |
| 15-122, gnl|canFam2|chr4 (46440435-46440302) | |
| 15-122, gnl|danRer3|chr21 (26063532-26063434) | |
| 15-122, gnl|danRer3|chr21 (26063542-26063428) | |
| 15-122, gnl|dasNov1|scaffold_12592 (6307-6213) | |
| 15-122, gnl|dasNov1|scaffold_1618 (133-4) | |
| 15-122, gnl|echTel1|scaffold_319749 (39882-39784) | |
| 15-122, gnl|echTel1|scaffold_319749 (39894-39766) | |
| 15-122, gnl|fr1|chrUn (134446774-134446854) | |
| 15-122, gnl|fr1|chrUn (134446762-134446854) | |
| 15-122, gnl|galGal2|chr13 (4815944-4816060) | |
| 15-122, gnl|hg17|chr12 (27542167-27542262) | |
| 15-122, gnl|hg17|chr5 (167870157-167870294) | |
| 15-122, gnl|Hg17|chr5 (167870164-167870271) | |
| 15-122, gnl|loxAfr1|scaffold_124619 (1265-1167) | |
| 15-122, gnl|loxAfr1|scaffold_34422 (16302-16439) | |
| 15-122, gnl|mm7|chr11 (35669455-35669357) | |
| 15-122, gnl|mm7|chr11 (35669467-35669330) | |
| 15-122, gnl|Mm7|chr11 (35669458-35669351) | |
| 15-122, gnl|monDom2|scaffold_6 (33591432-33591334) | |
| 15-122, gnl|monDom2|scaffold_6 (33373987-33373838) | |
| 15-122, gnl|oryCun1|scaffold_198829 (15275-15214) | |
| 15-122, gnl|oryCun1|scaffold_202828 (1346-1211) | |
| 15-122, gnl|panTro1|chr4 (175114433-175114570) | |
| 15-122, gnl|panTro1|chrUn_random (53973816-53973911) | |
| 15-122, gnl|rheMac2|chr11 (27780925-27781019) | |
| 15-122, gnl|rheMac2|chr6 (164886506-164886643) | |
| 15-122, gnl|rn3|chr10 (20728246-20728148) | |
| 15-122, gnl|rn3|chr10 (20728258-20728119) | |
| 15-122, gnl|tetNig1|chrUn_random (84559579-84559481) | |
| 15-122, gnl|tetNig1|chrUn_random (84559585-84559474) | |
| 15-122, gnl|xenTro1|scaffold_350 (28353-28469) | |
| 290-542, gnl|bosTau2|chr7 (53062946-53062694) | |
| 290-542, gnl|canFam2|chr4 (46436883-46436636) | |
| 290-542, gnl|danRer3|chr21 (26052019-26051763) | |
| 290-542, gnl|echTel1|scaffold_319749 (37623-37378) | |
| 290-542, gnl|fr1|chrUn (134449053-134449394) | |
| 290-542, gnl|hg17|chr12 (27542435-27542682) | |
| 290-542, gnl|Hg17|chr5 (167877394-167877646) | |
| 290-542, gnl|loxAfr1|scaffold_124619 (997-747) | |
| 290-542, gnl|mm7|chr11 (35663060-35662811) | |
| 290-542, gnl|Mm7|chr11 (35663060-35662808) | |
| 290-542, gnl|monDom2|scaffold_6 (33587707-33587462) | |
| 290-542, gnl|oryCun1|scaffold_198829 (15070-14824) | |
| 290-542, gnl|panTro1|chrUn_random (53974084-53974331) | |
| 290-542, gnl|rheMac2|chr11 (27781189-27781424) | |
| 290-542, gnl|rn3|chr10 (20723197-20722945) | |
| 290-542, gnl|tetNig1|chrUn_random (84558802-84558493) | |
| 290-542, gnl|xenTro1|scaffold_350 (32386-32633) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 15-122, gnl|bosTau2|chr7 (53067970-53067863) | |
| 15-122, gnl|canFam2|chr4 (46440427-46440329) | |
| 15-122, gnl|canFam2|chr4 (46440435-46440302) | |
| 15-122, gnl|danRer3|chr21 (26063532-26063434) | |
| 15-122, gnl|danRer3|chr21 (26063542-26063428) | |
| 15-122, gnl|dasNov1|scaffold_12592 (6307-6213) | |
| 15-122, gnl|dasNov1|scaffold_1618 (133-4) | |
| 15-122, gnl|echTel1|scaffold_319749 (39882-39784) | |
| 15-122, gnl|echTel1|scaffold_319749 (39894-39766) | |
| 15-122, gnl|fr1|chrUn (134446774-134446854) | |
| 15-122, gnl|fr1|chrUn (134446762-134446854) | |
| 15-122, gnl|galGal2|chr13 (4815944-4816060) | |
| 15-122, gnl|hg17|chr12 (27542167-27542262) | |
| 15-122, gnl|hg17|chr5 (167870157-167870294) | |
| 15-122, gnl|Hg17|chr5 (167870164-167870271) | |
| 15-122, gnl|loxAfr1|scaffold_124619 (1265-1167) | |
| 15-122, gnl|loxAfr1|scaffold_34422 (16302-16439) | |
| 15-122, gnl|mm7|chr11 (35669455-35669357) | |
| 15-122, gnl|mm7|chr11 (35669467-35669330) | |
| 15-122, gnl|Mm7|chr11 (35669458-35669351) | |
| 15-122, gnl|monDom2|scaffold_6 (33591432-33591334) | |
| 15-122, gnl|monDom2|scaffold_6 (33373987-33373838) | |
| 15-122, gnl|oryCun1|scaffold_198829 (15275-15214) | |
| 15-122, gnl|oryCun1|scaffold_202828 (1346-1211) | |
| 15-122, gnl|panTro1|chr4 (175114433-175114570) | |
| 15-122, gnl|panTro1|chrUn_random (53973816-53973911) | |
| 15-122, gnl|rheMac2|chr11 (27780925-27781019) | |
| 15-122, gnl|rheMac2|chr6 (164886506-164886643) | |
| 15-122, gnl|rn3|chr10 (20728246-20728148) | |
| 15-122, gnl|rn3|chr10 (20728258-20728119) | |
| 15-122, gnl|tetNig1|chrUn_random (84559579-84559481) | |
| 15-122, gnl|tetNig1|chrUn_random (84559585-84559474) | |
| 15-122, gnl|xenTro1|scaffold_350 (28353-28469) | |
| 290-542, gnl|bosTau2|chr7 (53062946-53062694) | |
| 290-542, gnl|canFam2|chr4 (46436883-46436636) | |
| 290-542, gnl|danRer3|chr21 (26052019-26051763) | |
| 290-542, gnl|echTel1|scaffold_319749 (37623-37378) | |
| 290-542, gnl|fr1|chrUn (134449053-134449394) | |
| 290-542, gnl|hg17|chr12 (27542435-27542682) | |
| 290-542, gnl|Hg17|chr5 (167877394-167877646) | |
| 290-542, gnl|loxAfr1|scaffold_124619 (997-747) | |
| 290-542, gnl|mm7|chr11 (35663060-35662811) | |
| 290-542, gnl|Mm7|chr11 (35663060-35662808) | |
| 290-542, gnl|monDom2|scaffold_6 (33587707-33587462) | |
| 290-542, gnl|oryCun1|scaffold_198829 (15070-14824) | |
| 290-542, gnl|panTro1|chrUn_random (53974084-53974331) | |
| 290-542, gnl|rheMac2|chr11 (27781189-27781424) | |
| 290-542, gnl|rn3|chr10 (20723197-20722945) | |
| 290-542, gnl|tetNig1|chrUn_random (84558802-84558493) | |
| 290-542, gnl|xenTro1|scaffold_350 (32386-32633) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| lin (0.582411) | |
| sag (0.548145) | |
| gul (0.532765) | |
| mgp (0.461361) | |
| amn (0.417711) | |
| ski (0.29347) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| spc (0.226732) | |
| nbm (0.198649) | |
| ton (0.1755) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| liv (0.146284) | |
| spl (0.143184) | |
| ova (0.129132) | |
| ret (0.128733) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.582411) | |
| sag (0.548145) | |
| gul (0.532765) | |
| mgp (0.461361) | |
| amn (0.417711) | |
| ski (0.29347) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| spc (0.226732) | |
| nbm (0.198649) | |
| ton (0.1755) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| liv (0.146284) | |
| spl (0.143184) | |
| ova (0.129132) | |
| ret (0.128733) |