Ss1.1-Pig4-TMW8022P15.3
|
GGTGAGCTTAAACTGAAGCAAGTTCGGAGGACGCCGGCGGCGCCCAGATTTGAAGAAACG
TTTCCAGGTCTGAGGCCCTTGCAAGTCTACAGGAGGTGTAAACCCGAAGGCCGAGATCCA
GAAATGGGACGCCGGTCATCAGATACTGAAGAAGAAAGCAGAAGCAAGAGAAAAAAGAAG
CACCGTAGACGATCTTCTTCAAGTAGTTCTTCAGATAGTAGAACATACAGCCGAAAGAAA
GGTGGAAGGAAATCAAGGTCAAAGTCAAGATCTTGGTCCAGAGATCTTCAGCCTCGCTCA
CATTCTTATGATAGAAGACGCAGGCATCGATCAAGCAGTAGTTCTTCTTATGGATCTAGA
AGAAAACGAAGTCGAAGTCATTCAAGGGGTCGAGGGAAATCCTATAGAGTTCAGAGGTCT
AGGTCAAAAAGCAGAACAAGAAGATCTCGGTCAAGACCTCGTCCACGTTCCCATAGTCGA
AGCAGTGAAAGGTCCAGTCACAGAAGAACACGTAGTAGGTCTCGGGATAGAGAACGACGG
AAAGGCAGAGATAAGGAGAAAAGAGAAAAGGAGAAGGATAAAGGCAAGGACAAGGAATTA
CACAACATCAAACGTGGGGAATCTGGAAACATCAAAGCTGGATTAGAACATCTGCCACCA
GCTGAACAGGCCAAAGCAAGACTACAGCTGGTTCTTGAAGCTGCTGCAAAAGCTGATGAA
GCATTGAAAGCCAAAGAAAGAAATGAAGAAGAAGCAAAGAGAAGAAAGGAAGAAGACCAA
GCCACCCTGGTTGAACAAGTAAAAAGAGTCAAAGAAATTGAAGCCATTGAAAGCGATTCT
TTTGTTCAGCAAACATTCAGATCAAGTAAAGAAGTCAAAAAGTCAGTGGAGCCTAGTGAA
GTGAAGCATGCAGCTGCAACATCAGGACCAGCATCAGTAGTAGCTGATCCACCAAATAAT
GAGAAAGAAATAGACCCTGGCAGCATCCCTACTGCTATCAAGTACCAAGATGACAATTCT
CTGGCCCATCCAAATTTATTTATTGAGAAAGCTGATGCTGAAGAAAAGTGGTTCAAGAGA
TTAATTGCTCTCCGACAAGAAAGGCTGATGGGCAGTCCCGTAGCCTAAAGTAATATACAT
ATGGTTGAATAATGAACAATAACATTCAAAATTTAGGTTTTTAAATCCCAGTATTAACTT
TTTACTCTTAAAAATAATTTAGCTGATTATATAAAAAGATAATCTCATTTTATCCTTTTC
TCTTGCAGGCTTGAATATTTGTTGATTGAACTTAATCAAACATTGTGAATATTAAAACTA
GTGTAAAGTTTAAGAATGCATGAAAATGTCATACTGTTAATAAAGCTAATCCTAAAAATG
TATTAAAATAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTGAGCTTAAACTGAAGCAAGTTCGGAGGACGCCGGCGGCGCCCAGATTTGAAGAAACG
TTTCCAGGTCTGAGGCCCTTGCAAGTCTACAGGAGGTGTAAACCCGAAGGCCGAGATCCA
GAAATGGGACGCCGGTCATCAGATACTGAAGAAGAAAGCAGAAGCAAGAGAAAAAAGAAG
CACCGTAGACGATCTTCTTCAAGTAGTTCTTCAGATAGTAGAACATACAGCCGAAAGAAA
GGTGGAAGGAAATCAAGGTCAAAGTCAAGATCTTGGTCCAGAGATCTTCAGCCTCGCTCA
CATTCTTATGATAGAAGACGCAGGCATCGATCAAGCAGTAGTTCTTCTTATGGATCTAGA
AGAAAACGAAGTCGAAGTCATTCAAGGGGTCGAGGGAAATCCTATAGAGTTCAGAGGTCT
AGGTCAAAAAGCAGAACAAGAAGATCTCGGTCAAGACCTCGTCCACGTTCCCATAGTCGA
AGCAGTGAAAGGTCCAGTCACAGAAGAACACGTAGTAGGTCTCGGGATAGAGAACGACGG
AAAGGCAGAGATAAGGAGAAAAGAGAAAAGGAGAAGGATAAAGGCAAGGACAAGGAATTA
CACAACATCAAACGTGGGGAATCTGGAAACATCAAAGCTGGATTAGAACATCTGCCACCA
GCTGAACAGGCCAAAGCAAGACTACAGCTGGTTCTTGAAGCTGCTGCAAAAGCTGATGAA
GCATTGAAAGCCAAAGAAAGAAATGAAGAAGAAGCAAAGAGAAGAAAGGAAGAAGACCAA
GCCACCCTGGTTGAACAAGTAAAAAGAGTCAAAGAAATTGAAGCCATTGAAAGCGATTCT
TTTGTTCAGCAAACATTCAGATCAAGTAAAGAAGTCAAAAAGTCAGTGGAGCCTAGTGAA
GTGAAGCATGCAGCTGCAACATCAGGACCAGCATCAGTAGTAGCTGATCCACCAAATAAT
GAGAAAGAAATAGACCCTGGCAGCATCCCTACTGCTATCAAGTACCAAGATGACAATTCT
CTGGCCCATCCAAATTTATTTATTGAGAAAGCTGATGCTGAAGAAAAGTGGTTCAAGAGA
TTAATTGCTCTCCGACAAGAAAGGCTGATGGGCAGTCCCGTAGCCTAAAGTAATATACAT
ATGGTTGAATAATGAACAATAACATTCAAAATTTAGGTTTTTAAATCCCAGTATTAACTT
TTTACTCTTAAAAATAATTTAGCTGATTATATAAAAAGATAATCTCATTTTATCCTTTTC
TCTTGCAGGCTTGAATATTTGTTGATTGAACTTAATCAAACATTGTGAATATTAAAACTA
GTGTAAAGTTTAAGAATGCATGAAAATGTCATACTGTTAATAAAGCTAATCCTAAAAATG
TATTAAAATAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
120-317, gnl|bosTau2|chr1 (10001517-10001714) |
|
120-317, gnl|canFam2|chr23 (54565432-54565264) |
|
120-317, gnl|dasNov1|scaffold_28602 (14722-14556) |
|
120-317, gnl|echTel1|scaffold_278569 (51854-52022) |
|
120-317, gnl|Hg17|chr3 (159322592-159322789) |
|
120-317, gnl|hg17|chr9 (87990111-87990292) |
|
120-317, gnl|loxAfr1|scaffold_4171 (39430-39598) |
|
120-317, gnl|mm7|chr10 (90817984-90818172) |
|
120-317, gnl|Mm7|chr3 (67095521-67095718) |
|
120-317, gnl|monDom2|scaffold_29 (25406357-25406177) |
|
120-317, gnl|oryCun1|scaffold_195759 (54961-55120) |
|
120-317, gnl|panTro1|chr11 (71987014-71987193) |
|
120-317, gnl|rheMac2|chr15 (96582297-96582474) |
|
120-317, gnl|rn3|chr1 (38011859-38012027) |
| |
|
1193-1388, gnl|bosTau2|chr8 (11735113-11735304) |
|
1193-1388, gnl|Hg17|chr9 (87989248-87989029) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
120-317, gnl|bosTau2|chr1 (10001517-10001714) |
|
120-317, gnl|canFam2|chr23 (54565432-54565264) |
|
120-317, gnl|dasNov1|scaffold_28602 (14722-14556) |
|
120-317, gnl|echTel1|scaffold_278569 (51854-52022) |
|
120-317, gnl|Hg17|chr3 (159322592-159322789) |
|
120-317, gnl|hg17|chr9 (87990111-87990292) |
|
120-317, gnl|loxAfr1|scaffold_4171 (39430-39598) |
|
120-317, gnl|mm7|chr10 (90817984-90818172) |
|
120-317, gnl|Mm7|chr3 (67095521-67095718) |
|
120-317, gnl|monDom2|scaffold_29 (25406357-25406177) |
|
120-317, gnl|oryCun1|scaffold_195759 (54961-55120) |
|
120-317, gnl|panTro1|chr11 (71987014-71987193) |
|
120-317, gnl|rheMac2|chr15 (96582297-96582474) |
|
120-317, gnl|rn3|chr1 (38011859-38012027) |
| |
|
1193-1388, gnl|bosTau2|chr8 (11735113-11735304) |
|
1193-1388, gnl|Hg17|chr9 (87989248-87989029) |
|
amn (0.417711) |
|
cte (0.29274) |
|
kid (0.259471) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
eje (0.197668) |
|
sag (0.182715) |
|
ton (0.1755) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
che (0.136314) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
cbl (0.114797) |
|
cty (0.10408) |
|
amn (0.417711) |
|
cte (0.29274) |
|
kid (0.259471) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
eje (0.197668) |
|
sag (0.182715) |
|
ton (0.1755) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
che (0.136314) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
cbl (0.114797) |
|
cty (0.10408) |
