Non-Coding RNA Search

Ss1.1-Pig4-TMW8022P20.3

Sequence:


               
               TCTAGCCATTTGTTACGCCGCCCCTCGAGACCTGTCTGTGCCGGAGCCCAATATTTACGT
CTCTCGAGCAAATGAAGAAGGCGACTCTTCTTCATTATGGTACAGTTCCACCTGTCATAT
GTGAAAACTGCAGTAAAATAAACCCACACGCTAAAGCATTCCTGTAGGGAGGTTAGACCG
AGACTGTGGCAGGCATCTCATCTTCTTTCTTTGTTAAGCTGTATACTGTTTGGATTTTTA
TTGCAATCTTTTACCAAGTGGTGTGAGAAACTTGGTATTAATATCTTCGTTCCATTTCAA
GTTTAGGTCAAGAATATTTTTGTTTTCCGGAGGAAGAGGTATCTACTGTATAATTGCACC
AAAGTACAAATGAAAGGAAGGTTTTCTTTGATAGTGTAATCCTGCAGCCATGTAGATAAA
GACACAAATATATAATTTGTTAGGTTGAACAAAATGTGGAAAAATGCTTTTCTGTTAGTA
GAATGCCGAGACCTACCTAAGCCACATAATAAATTCTTTTACCAACTTTAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAGCCATTTGTTACGCCGCCCCTCGAGACCTGTCTGTGCCGGAGCCCAATATTTACGT
CTCTCGAGCAAATGAAGAAGGCGACTCTTCTTCATTATGGTACAGTTCCACCTGTCATAT
GTGAAAACTGCAGTAAAATAAACCCACACGCTAAAGCATTCCTGTAGGGAGGTTAGACCG
AGACTGTGGCAGGCATCTCATCTTCTTTCTTTGTTAAGCTGTATACTGTTTGGATTTTTA
TTGCAATCTTTTACCAAGTGGTGTGAGAAACTTGGTATTAATATCTTCGTTCCATTTCAA
GTTTAGGTCAAGAATATTTTTGTTTTCCGGAGGAAGAGGTATCTACTGTATAATTGCACC
AAAGTACAAATGAAAGGAAGGTTTTCTTTGATAGTGTAATCCTGCAGCCATGTAGATAAA
GACACAAATATATAATTTGTTAGGTTGAACAAAATGTGGAAAAATGCTTTTCTGTTAGTA
GAATGCCGAGACCTACCTAAGCCACATAATAAATTCTTTTACCAACTTTAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               38-543, gnl|bosTau2|chr25 (2382905-2383398)
               

               
               38-543, gnl|Hg17|chr11 (10757390-10757865)
               

               
               38-543, gnl|Mm7|chr7 (106971468-106971898)
               


               
               44-529, gnl|bosTau2|chr15 (26751806-26752279)
               

               
               44-529, gnl|Hg17|chr11 (10757396-10757869)
               

               
               44-529, gnl|Mm7|chr7 (106971474-106971911)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-543, gnl|bosTau2|chr25 (2382905-2383398)
               

               
               38-543, gnl|Hg17|chr11 (10757390-10757865)
               

               
               38-543, gnl|Mm7|chr7 (106971468-106971898)
               


               
               44-529, gnl|bosTau2|chr15 (26751806-26752279)
               

               
               44-529, gnl|Hg17|chr11 (10757396-10757869)
               

               
               44-529, gnl|Mm7|chr7 (106971474-106971911)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               mga (0.32041)
               

               
               ova (0.258264)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.32041)
               

               
               ova (0.258264)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	38-543, gnl\|bosTau2\|chr25 (2382905-2383398)
	38-543, gnl\|Hg17\|chr11 (10757390-10757865)
	38-543, gnl\|Mm7\|chr7 (106971468-106971898)

	44-529, gnl\|bosTau2\|chr15 (26751806-26752279)
	44-529, gnl\|Hg17\|chr11 (10757396-10757869)
	44-529, gnl\|Mm7\|chr7 (106971474-106971911)

	mga (0.32041)
	ova (0.258264)
	nlu (0.191681)
	gul (0.177588)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	bfe (0.149858)
	lyg (0.133103)
	thg (0.126791)
	cly (0.120642)
	pgl (0.118483)
	eje (0.0988338)