Non-Coding RNA Search

Ss1.1-Pig4-TMW8023A10.3

Sequence:


               
               GTGTTTCTGCAAAGTATAGATCCTCAGCTATCAGACTCCCTCGCCGACCTCTTCAGGCAA
CATGACATTGATGGGAAGGCTCTGCTACTCCTCAAGAGTGACATGATGATTAAGTACATG
GGGCTAAAACTAGGGACAGCCGTGAAGTTGTGCCACTACATTGAAAGGCTTAAAGGAAAA
TACTTCAACAATTGAAAAGCTGTTTATAGATTAGATTAGACTTAATTCTGGGGAGACCAT
TGCTCCCCAGAAAAATTGTCATTTTTCTGCCCTTAGATGTTTTTCTTACGTAAGAGATTG
CTCTAAATATGTATCCAGAGTCGCAGAACCATGTTACAGTCCAGCCCACCCCTTTAGAAG
CCATTTCACATGTTAGTGCTAGCATTTTCACGCTGCTTGTTTGTTCTTTATACCTTCATT
CTTTTCATTGTATAGTTTACAGATATACTTTGTGCAGGAAACAGAAACACCTTTGATTGT
GGTTAATTAATGGTTATCTGTAAAACTACAACAGCTAAATCCCAAAGAGGAAGGTCTCAG
AGACTGACAGGTTCTCTAATGAAATCCACGAGGTGTTTTCCTTCGAAGCGTCTTAAAAGA
TGCAACTATCGACATCATCTCTTTCTCAAATACTTTGTCACTGCAGTGTTCTGTTCATGT
TCTACCCGTTTCCAGAAAGGAATAGCCATATAAATTATTTTCCTTTTGTTATCATTTCTC
TATGTTTTATCTGGTCCTATTTAAAGGGGGGAACAAGCAACCTTATAAGCTTTCATGAAG
AGTTCTTATCAACTTTTTACAATAAGGTAGATAGATAGCAGAGTTGTTTTATGCAAGAGG
TATTACATTACAGGTGGCTTGGGTGGAGTCTGATTTTATTCTTTCCAGTTAAATACCTGT
GTTTTAAAACTCCCATATTGTGCCTCAGCTTGATTTTTTAACTAGGCAGGCATTCACTTC
TCGCTCTCACTGAAGATGCCTAGGTTCTAATTTTTAAAAGATACGTGTTTTATTCTTCAT
GTGGATACTGGTTCATATTTATATTTTATTCTCTATCGGAAGTGTTCACACAAGTCTTTT
CTTTTTGAATTGAAAACGGCACTTTACACTTGCACAGAGGTAAAGATGAACTCCCTACAT
AGTGAGATGCCTTTATTCTGTAAAACATGTGCACACCCTTTGCTGCCATTGGTCCCTCTG
GGCTTACGCTTCAGTTTCCATACAGGGAAGTTCTCAGCCTTGTGCAGTGTTCCTCGTTAA
TTTGCTTTCTGAGCCGTTTATCCTACTAAACTTTCCAAGATACTTTAGCTCTGATTTGTC
ATGTTGACCTTTATTTTACATAGCAGAACTTTCTAGTGAAACATGCTCATCGTTGTTATT
TTGTTATTTATTACATCTTTAATTGTATAATATTTGAGGTAATGTTTATAAGCTATAACA
ATTGGTGCTTATTTTAATTGGTGCTAATAAGATGTTCACCAGGGCAAGAGTATTTATTTT
CTTTCAAGGAAACCACGTGTACTTTATAAGCAAATGCAACCATTTATTGGGCATATATGA
TTTAAAGGATGGTTTTTTTTTCTGTTATTCCTTTTGTGATAAACAAGATCCTAGTTAAAC
TTGGTCTTTGAGATTGTGTAAAGATGCTGTGCCCATTTGAACAGTCCTCAGGAGTTTGTA
TAAATACTGTGTTATTTTTATAGTTTTTAGATTTTAAAATAAAGTTTAATAACCACAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTTTCTGCAAAGTATAGATCCTCAGCTATCAGACTCCCTCGCCGACCTCTTCAGGCAA
CATGACATTGATGGGAAGGCTCTGCTACTCCTCAAGAGTGACATGATGATTAAGTACATG
GGGCTAAAACTAGGGACAGCCGTGAAGTTGTGCCACTACATTGAAAGGCTTAAAGGAAAA
TACTTCAACAATTGAAAAGCTGTTTATAGATTAGATTAGACTTAATTCTGGGGAGACCAT
TGCTCCCCAGAAAAATTGTCATTTTTCTGCCCTTAGATGTTTTTCTTACGTAAGAGATTG
CTCTAAATATGTATCCAGAGTCGCAGAACCATGTTACAGTCCAGCCCACCCCTTTAGAAG
CCATTTCACATGTTAGTGCTAGCATTTTCACGCTGCTTGTTTGTTCTTTATACCTTCATT
CTTTTCATTGTATAGTTTACAGATATACTTTGTGCAGGAAACAGAAACACCTTTGATTGT
GGTTAATTAATGGTTATCTGTAAAACTACAACAGCTAAATCCCAAAGAGGAAGGTCTCAG
AGACTGACAGGTTCTCTAATGAAATCCACGAGGTGTTTTCCTTCGAAGCGTCTTAAAAGA
TGCAACTATCGACATCATCTCTTTCTCAAATACTTTGTCACTGCAGTGTTCTGTTCATGT
TCTACCCGTTTCCAGAAAGGAATAGCCATATAAATTATTTTCCTTTTGTTATCATTTCTC
TATGTTTTATCTGGTCCTATTTAAAGGGGGGAACAAGCAACCTTATAAGCTTTCATGAAG
AGTTCTTATCAACTTTTTACAATAAGGTAGATAGATAGCAGAGTTGTTTTATGCAAGAGG
TATTACATTACAGGTGGCTTGGGTGGAGTCTGATTTTATTCTTTCCAGTTAAATACCTGT
GTTTTAAAACTCCCATATTGTGCCTCAGCTTGATTTTTTAACTAGGCAGGCATTCACTTC
TCGCTCTCACTGAAGATGCCTAGGTTCTAATTTTTAAAAGATACGTGTTTTATTCTTCAT
GTGGATACTGGTTCATATTTATATTTTATTCTCTATCGGAAGTGTTCACACAAGTCTTTT
CTTTTTGAATTGAAAACGGCACTTTACACTTGCACAGAGGTAAAGATGAACTCCCTACAT
AGTGAGATGCCTTTATTCTGTAAAACATGTGCACACCCTTTGCTGCCATTGGTCCCTCTG
GGCTTACGCTTCAGTTTCCATACAGGGAAGTTCTCAGCCTTGTGCAGTGTTCCTCGTTAA
TTTGCTTTCTGAGCCGTTTATCCTACTAAACTTTCCAAGATACTTTAGCTCTGATTTGTC
ATGTTGACCTTTATTTTACATAGCAGAACTTTCTAGTGAAACATGCTCATCGTTGTTATT
TTGTTATTTATTACATCTTTAATTGTATAATATTTGAGGTAATGTTTATAAGCTATAACA
ATTGGTGCTTATTTTAATTGGTGCTAATAAGATGTTCACCAGGGCAAGAGTATTTATTTT
CTTTCAAGGAAACCACGTGTACTTTATAAGCAAATGCAACCATTTATTGGGCATATATGA
TTTAAAGGATGGTTTTTTTTTCTGTTATTCCTTTTGTGATAAACAAGATCCTAGTTAAAC
TTGGTCTTTGAGATTGTGTAAAGATGCTGTGCCCATTTGAACAGTCCTCAGGAGTTTGTA
TAAATACTGTGTTATTTTTATAGTTTTTAGATTTTAAAATAAAGTTTAATAACCACAACC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               66-1167, gnl|bosTau2|chr10 (24237885-24236804)
               

               
               66-1167, gnl|Hg17|chrX (17531037-17532151)
               

               
               66-1167, gnl|Mm7|chrX (156589665-156588588)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-1167, gnl|bosTau2|chr10 (24237885-24236804)
               

               
               66-1167, gnl|Hg17|chrX (17531037-17532151)
               

               
               66-1167, gnl|Mm7|chrX (156589665-156588588)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               ova (0.516529)
               

               
               pgl (0.35545)
               

               
               lin (0.291206)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.516529)
               

               
               pgl (0.35545)
               

               
               lin (0.291206)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	66-1167, gnl\|bosTau2\|chr10 (24237885-24236804)
	66-1167, gnl\|Hg17\|chrX (17531037-17532151)
	66-1167, gnl\|Mm7\|chrX (156589665-156588588)

	ova (0.516529)
	pgl (0.35545)
	lin (0.291206)
	fty (0.17584)
	eye (0.170503)
	liv (0.146284)
	spl (0.143184)
	ret (0.128733)
	thg (0.126791)
	tra (0.123092)
	spc (0.113366)