Non-Coding RNA Search

Ss1.1-Pig4-TMW8023A17.3

Sequence:


               
               TATGTGCTGAAGCTGCTCAAGGTGCAGACCAAGTACCTGGGGCGGCAGTGGCGAAAGAGC
AACATGAAGACCATGTCTGCCATCTACCAGAAGGTGCGACACCGGCTGAACGACGACTGG
GCCTACGGCAACGATCTTGATGCCCGGCCGTGGGACTTCCAGGCAGAGGAGTGTGCCCTC
CGTGCCAACATCGAACGCTTCAATGCCCGGCGCTATGACCGGGCCCATAGCAACCCTGAC
TTTCTGCCTGTGGACAACTGCCTGCAGAGTGTCCTGGGCCAGCGGGTGGACCTCCCTGAG
GACTTCCAGATGAACTACGACCTCTGGTTAGAAAGGGAGGTCTTCTCCAAGCCCATTTCC
TGGGAAGAGCTGCTGCAGTGAGGCTCCTGGGTGGGAGTCTGAAAGATGGGGTGATCCCCA
GGTACCCCAGGGGCTGTCCTCGTTCCTTGCTGCAGTGCTCCCATCCCCCTCCAGGTGGCA
GCACAGCCCCACTGTGCCCTCCCAGGCCAGTGCTGGACTGGTGAGTGAGTCCAGATCTGG
CCTCTCTGTGGTTCCCAGTGTCCTGCTCGGAGCCGTCATTTCTCTCCCTGGGATCCTCTT
CCTTCGTTCCTCCCCGCCCTCCTCTCTCGGACGTTGTTGGTTGCAGCTCATTTGTCATGT
AGGCCCAAGGCTGGGGAAAGTTAGGTTGGGCTGGGAACCCACTGCATCTGAATTTCAGGG
ATCATGCTCACTCTTCCTGAGACACGCAGATCCTTGGCATGTGGGTTTGCCAAGGAGGAG
GGCTTAGGGTTAGAGCCCGGTCAGACAGTGGTTTTGCTTTAGGGGTTTCTGATGTCATTC
CAGCCTCCTGCTAAGTTTCATCCAGAAGCGGTTGCAGAGGCTCCTGCAGCTGCCTCAGCA
CTTTGCTTCTGGACAGAGTTGGGGTAGGAAGAGATGTGTCCTTTAACCAGAGGTGCCATT
TTTTTTTTTTTTTTCTTGGTTTGCAGGGGTCTGTAAATACCTATATATAAATTGGTGTGT
ATTCTCTTGTGTCATGTTGGGGTTTTTAATGTGTTTGTGTATTCCGTTTACATTAAAAGG
AAGCAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGTGCTGAAGCTGCTCAAGGTGCAGACCAAGTACCTGGGGCGGCAGTGGCGAAAGAGC
AACATGAAGACCATGTCTGCCATCTACCAGAAGGTGCGACACCGGCTGAACGACGACTGG
GCCTACGGCAACGATCTTGATGCCCGGCCGTGGGACTTCCAGGCAGAGGAGTGTGCCCTC
CGTGCCAACATCGAACGCTTCAATGCCCGGCGCTATGACCGGGCCCATAGCAACCCTGAC
TTTCTGCCTGTGGACAACTGCCTGCAGAGTGTCCTGGGCCAGCGGGTGGACCTCCCTGAG
GACTTCCAGATGAACTACGACCTCTGGTTAGAAAGGGAGGTCTTCTCCAAGCCCATTTCC
TGGGAAGAGCTGCTGCAGTGAGGCTCCTGGGTGGGAGTCTGAAAGATGGGGTGATCCCCA
GGTACCCCAGGGGCTGTCCTCGTTCCTTGCTGCAGTGCTCCCATCCCCCTCCAGGTGGCA
GCACAGCCCCACTGTGCCCTCCCAGGCCAGTGCTGGACTGGTGAGTGAGTCCAGATCTGG
CCTCTCTGTGGTTCCCAGTGTCCTGCTCGGAGCCGTCATTTCTCTCCCTGGGATCCTCTT
CCTTCGTTCCTCCCCGCCCTCCTCTCTCGGACGTTGTTGGTTGCAGCTCATTTGTCATGT
AGGCCCAAGGCTGGGGAAAGTTAGGTTGGGCTGGGAACCCACTGCATCTGAATTTCAGGG
ATCATGCTCACTCTTCCTGAGACACGCAGATCCTTGGCATGTGGGTTTGCCAAGGAGGAG
GGCTTAGGGTTAGAGCCCGGTCAGACAGTGGTTTTGCTTTAGGGGTTTCTGATGTCATTC
CAGCCTCCTGCTAAGTTTCATCCAGAAGCGGTTGCAGAGGCTCCTGCAGCTGCCTCAGCA
CTTTGCTTCTGGACAGAGTTGGGGTAGGAAGAGATGTGTCCTTTAACCAGAGGTGCCATT
TTTTTTTTTTTTTTCTTGGTTTGCAGGGGTCTGTAAATACCTATATATAAATTGGTGTGT
ATTCTCTTGTGTCATGTTGGGGTTTTTAATGTGTTTGTGTATTCCGTTTACATTAAAAGG
AAGCAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61856346|ref|XP_612033.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61856346|ref|XP_612033.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               252-371, + strand, RNAz p=0.700765
               

               
               848-967, - strand, RNAz p=0.578249

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               252-371, + strand, RNAz p=0.700765
               

               
               848-967, - strand, RNAz p=0.578249

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AL834196, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AL834196, +

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               1-131, gnl|bosTau2|chr4 (49549099-49548969)
               

               
               1-131, gnl|canFam2|chr14 (10253816-10253595)
               

               
               1-131, gnl|danRer3|chrUn (128306895-128306661)
               

               
               1-131, gnl|dasNov1|scaffold_13402 (1160-939)
               

               
               1-131, gnl|echTel1|scaffold_299492 (2515-2736)
               

               
               1-131, gnl|fr1|chrUn (46068880-46068667)
               

               
               1-131, gnl|galGal2|chr14 (14667227-14667448)
               

               
               1-131, gnl|hg17|chr7 (128716632-128716853)
               

               
               1-131, gnl|Hg17|chr7 (128716706-128716836)
               

               
               1-131, gnl|loxAfr1|scaffold_6898 (59499-59298)
               

               
               1-131, gnl|mm7|chr6 (29887576-29887797)
               

               
               1-131, gnl|Mm7|chr6 (29887650-29887780)
               

               
               1-131, gnl|monDom2|scaffold_22 (15079513-15079301)
               

               
               1-131, gnl|oryCun1|scaffold_184733 (5659-5879)
               

               
               1-131, gnl|panTro1|chr6 (131116794-131117015)
               

               
               1-131, gnl|rheMac2|chr3 (166827861-166828082)
               

               
               1-131, gnl|rn3|chr4 (57135136-57135357)
               

               
               1-131, gnl|tetNig1|chr19 (4811854-4811643)
               

               
               1-131, gnl|xenTro1|scaffold_20 (2931658-2931443)
               


               
               133-1092, gnl|bosTau2|chr3 (25390157-25389219)
               

               
               133-1092, gnl|Hg17|chr1 (110308328-110309305)
               

               
               133-1092, gnl|Mm7|chr3 (107431755-107430822)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-131, gnl|bosTau2|chr4 (49549099-49548969)
               

               
               1-131, gnl|canFam2|chr14 (10253816-10253595)
               

               
               1-131, gnl|danRer3|chrUn (128306895-128306661)
               

               
               1-131, gnl|dasNov1|scaffold_13402 (1160-939)
               

               
               1-131, gnl|echTel1|scaffold_299492 (2515-2736)
               

               
               1-131, gnl|fr1|chrUn (46068880-46068667)
               

               
               1-131, gnl|galGal2|chr14 (14667227-14667448)
               

               
               1-131, gnl|hg17|chr7 (128716632-128716853)
               

               
               1-131, gnl|Hg17|chr7 (128716706-128716836)
               

               
               1-131, gnl|loxAfr1|scaffold_6898 (59499-59298)
               

               
               1-131, gnl|mm7|chr6 (29887576-29887797)
               

               
               1-131, gnl|Mm7|chr6 (29887650-29887780)
               

               
               1-131, gnl|monDom2|scaffold_22 (15079513-15079301)
               

               
               1-131, gnl|oryCun1|scaffold_184733 (5659-5879)
               

               
               1-131, gnl|panTro1|chr6 (131116794-131117015)
               

               
               1-131, gnl|rheMac2|chr3 (166827861-166828082)
               

               
               1-131, gnl|rn3|chr4 (57135136-57135357)
               

               
               1-131, gnl|tetNig1|chr19 (4811854-4811643)
               

               
               1-131, gnl|xenTro1|scaffold_20 (2931658-2931443)
               


               
               133-1092, gnl|bosTau2|chr3 (25390157-25389219)
               

               
               133-1092, gnl|Hg17|chr1 (110308328-110309305)
               

               
               133-1092, gnl|Mm7|chr3 (107431755-107430822)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               elu (0.385356)
               

               
               pty (0.285429)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               pty (0.285429)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	252-371, + strand, RNAz p=0.700765
	848-967, - strand, RNAz p=0.578249

	1-131, gnl\|bosTau2\|chr4 (49549099-49548969)
	1-131, gnl\|canFam2\|chr14 (10253816-10253595)
	1-131, gnl\|danRer3\|chrUn (128306895-128306661)
	1-131, gnl\|dasNov1\|scaffold_13402 (1160-939)
	1-131, gnl\|echTel1\|scaffold_299492 (2515-2736)
	1-131, gnl\|fr1\|chrUn (46068880-46068667)
	1-131, gnl\|galGal2\|chr14 (14667227-14667448)
	1-131, gnl\|hg17\|chr7 (128716632-128716853)
	1-131, gnl\|Hg17\|chr7 (128716706-128716836)
	1-131, gnl\|loxAfr1\|scaffold_6898 (59499-59298)
	1-131, gnl\|mm7\|chr6 (29887576-29887797)
	1-131, gnl\|Mm7\|chr6 (29887650-29887780)
	1-131, gnl\|monDom2\|scaffold_22 (15079513-15079301)
	1-131, gnl\|oryCun1\|scaffold_184733 (5659-5879)
	1-131, gnl\|panTro1\|chr6 (131116794-131117015)
	1-131, gnl\|rheMac2\|chr3 (166827861-166828082)
	1-131, gnl\|rn3\|chr4 (57135136-57135357)
	1-131, gnl\|tetNig1\|chr19 (4811854-4811643)
	1-131, gnl\|xenTro1\|scaffold_20 (2931658-2931443)

	133-1092, gnl\|bosTau2\|chr3 (25390157-25389219)
	133-1092, gnl\|Hg17\|chr1 (110308328-110309305)
	133-1092, gnl\|Mm7\|chr3 (107431755-107430822)

	elu (0.385356)
	pty (0.285429)
	ece (0.229305)
	col (0.195008)
	nep (0.183925)
	fty (0.17584)
	eye (0.170503)
	fhi (0.169578)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)